Rorug02G0187900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004039
Physical Location & Seq
Reverse (-)
17506401 .. 17511341
4941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0187900.1

Sequence Viewer

Length: 930 bp
ATGCTCCGGGTAGATGTGTATTGCTCTCTACTTTCTAGTCCCCGACAAGTCAAGTTGGTAAATGTCGGCAGCAGAAGTTTAGGGCCATGGCAGATCCAGCAGCGTAGCGCTCAAAGACTACCCAAGGGGATTTCTGTCAAGGCCGTGAATGATGGGACGGGAGGGGGAACAAGCGGATTTCGGGGTCAGAGCTGGGAGCCTGGGTCAGAAATTGAGGTTCCTTTTGAACAAAGACCGGTGAATGAGTACTCATCTTTGAAGGAAGGAACCTTGTACTCGTGGGGCGATCTGGGACCGGGGCCTTTTTTCCTTCGTCTTGGAGGTTTGTGGTTGGTAACATTCACAGTTTTAGGAGTGCCCATAGCAGCTGCAAGCTTTAATCCATCAAGGGACCCTCTACGATTTGTTCTAGCAGCTGGAACCGGAACTCTTTTCCTTGTATCGTTGATCGTCTTAAGAATTTATCTGGGATGGAGTTACGTTGGCGATAGACTACTATCAGCAGTCATACCTTACGAAGAGACTGGATGGTATGATGGACAAATGTGGGTGAAACCACCTGAGGTCCTGGCTCGTGACAGACTTTTGGGCTCTTACAAGGTTAAACCAGTCATCAAGTTGCTGAAACAGACTCTAGTCGGAACAGGGGTATTGCTTGTTTCAGCAGTGATGCTATTCATCTTTGCTACACCAGTGGAGGATTTCGTTCAAACCACATTTTCTACAAAAGAAAACTCATCAAATGTTTCTGTCTCAAAACTGAGAAGAGAAGAATTGCTTAAATTGCCTACGGAAGTAAAATCTGATGATGACCTAGCAGCAGCCGCTGCTGAGGCGGCAGACGGAAGACCAGTCTACTGCAGAGATAGGTTTTATCGTGCACTAGCAGGAGGACAATACTGCAAGTCAGATGATCTACTGATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

309

Amino Acids

33.98

Weight (kDa)

9.02

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGLD27-like PF06799 72 - 213 1.5e-54 Conserved in the green lineage and diatoms 27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 855
AciI CCGC 3 cut(s) 174, 825, 836
AclWI GGATC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 459
AfaI GTAC 2 cut(s) 248, 275
AfeI AGCGCT 1 cut(s) 109
AflII CTTAAG 1 cut(s) 454
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 3 cut(s) 227, 259, 710
AjnI CCWGG 2 cut(s) 199, 567
AluBI AGCT 4 cut(s) 192, 368, 375, 416
AluI AGCT 4 cut(s) 192, 368, 375, 416
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 2 cut(s) 515, 757
Alw44I GTGCAC 1 cut(s) 879
AlwI GGATC 1 cut(s) 88
AlwNI CAGNNNCTG 1 cut(s) 827
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 3 cut(s) 83, 141, 299
ApaLI GTGCAC 1 cut(s) 879
ApeKI GCWGC 8 cut(s) 69, 100, 365, 368, 413, 818, 821, 827
ApoI RAATTY 1 cut(s) 459
AsiGI ACCGGT 1 cut(s) 235
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 5 cut(s) 83, 293, 299, 391, 565
AsuC2I CCSGG 2 cut(s) 8, 297
AsuHPI GGTGA 2 cut(s) 250, 562
AvaII GGWCC 3 cut(s) 293, 391, 565
AxyI CCTNAGG 1 cut(s) 561
BaeGI GKGCMC 2 cut(s) 360, 883
BanII GRGCYC 1 cut(s) 593
BauI CACGAG 2 cut(s) 277, 573
BbsI GAAGAC 1 cut(s) 853
Bbv12I GWGCWC 1 cut(s) 883
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 8 cut(s) 81, 112, 355, 377, 425, 814, 830, 833
BccI CCATC 5 cut(s) 146, 391, 465, 522, 530
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 2 cut(s) 201, 569
BcnI CCSGG 2 cut(s) 8, 297
BcoDI GTCTC 2 cut(s) 515, 757
BfaI CTAG 5 cut(s) 36, 410, 635, 815, 884
BfmI CTRYAG 1 cut(s) 859
BfoI RGCGCY 1 cut(s) 111
BfrI CTTAAG 1 cut(s) 454
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 4 cut(s) 8, 201, 297, 569
Bme18I GGWCC 3 cut(s) 293, 391, 565
BmgT120I GGNCC 5 cut(s) 83, 293, 299, 391, 565
BmiI GGNNCC 8 cut(s) 198, 219, 268, 294, 300, 392, 393, 421
BmrFI CCNGG 4 cut(s) 8, 201, 297, 569
BmsI GCATC 1 cut(s) 660
BoxI GACNNNNGTC 1 cut(s) 635
BpiI GAAGAC 1 cut(s) 853
Bpu10I CCTNAGC 1 cut(s) 831
BpuMI CCSGG 2 cut(s) 8, 297
BsaJI CCNNGG 4 cut(s) 86, 123, 200, 296
BsaWI WCCGGW 2 cut(s) 235, 422
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 4 cut(s) 529, 608, 692, 851
Bse21I CCTNAGG 1 cut(s) 561
BseBI CCWGG 2 cut(s) 201, 569
BseDI CCNNGG 4 cut(s) 86, 123, 200, 296
BseGI GGATG 2 cut(s) 476, 533
BseMII CTCAG 3 cut(s) 552, 752, 822
BseNI ACTGG 4 cut(s) 529, 608, 692, 851
BseSI GKGCMC 2 cut(s) 360, 883
BseXI GCAGC 8 cut(s) 81, 112, 355, 377, 425, 814, 830, 833
BseYI CCCAGC 1 cut(s) 192
BshFI GGCC 3 cut(s) 85, 143, 301
BshTI ACCGGT 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 883
BsiSI CCGG 4 cut(s) 7, 236, 296, 423
BslFI GGGAC 4 cut(s) 24, 169, 306, 404
BsmAI GTCTC 2 cut(s) 515, 757
BsmFI GGGAC 4 cut(s) 24, 169, 306, 404
BsnI GGCC 3 cut(s) 85, 143, 301
Bsp1286I GDGCHC 3 cut(s) 360, 593, 883
Bsp143I GATC 4 cut(s) 93, 286, 447, 913
Bsp19I CCATGG 1 cut(s) 86
BspACI CCGC 3 cut(s) 174, 825, 836
BspANI GGCC 3 cut(s) 85, 143, 301
BspCNI CTCAG 3 cut(s) 553, 753, 823
BspLI GGNNCC 8 cut(s) 198, 219, 268, 294, 300, 392, 393, 421
BspMAI CTGCAG 1 cut(s) 863
BspPI GGATC 1 cut(s) 88
BspTI CTTAAG 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 4 cut(s) 529, 608, 692, 851
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 4 cut(s) 86, 123, 200, 296
BssMI GATC 4 cut(s) 93, 286, 447, 913
BssSI CACGAG 2 cut(s) 277, 573
BssT1I CCWWGG 2 cut(s) 86, 123
Bst2BI CACGAG 2 cut(s) 277, 573
Bst2UI CCWGG 2 cut(s) 201, 569
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 513, 760
BstAFI CTTAAG 1 cut(s) 454
BstAPI GCANNNNNTGC 1 cut(s) 827
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 561, 761, 831
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 476, 533
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 4 cut(s) 96, 289, 450, 916
BstMAI GTCTC 2 cut(s) 515, 757
BstMBI GATC 4 cut(s) 93, 286, 447, 913
BstMWI GCNNNNNNNGC 6 cut(s) 97, 784, 824, 827, 833, 836
BstNI CCWGG 2 cut(s) 201, 569
BstPAI GACNNNNGTC 1 cut(s) 635
BstSCI CCNGG 4 cut(s) 6, 199, 295, 567
BstSFI CTRYAG 1 cut(s) 859
BstSLI GKGCMC 2 cut(s) 360, 883
BstV1I GCAGC 8 cut(s) 81, 112, 355, 377, 425, 814, 830, 833
BstV2I GAAGAC 1 cut(s) 853
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 3 cut(s) 85, 143, 301
BtgI CCRYGG 1 cut(s) 86
BtsCI GGATG 2 cut(s) 476, 533
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 2 cut(s) 672, 699
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 827
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 5 cut(s) 83, 293, 299, 391, 565
Csp6I GTAC 2 cut(s) 247, 274
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 1 cut(s) 87
CviQI GTAC 2 cut(s) 247, 274
DdeI CTNAG 3 cut(s) 561, 761, 831
DpnI GATC 4 cut(s) 95, 288, 449, 915
DpnII GATC 4 cut(s) 93, 286, 447, 913
Eam1104I CTCTTC 2 cut(s) 513, 760
EarI CTCTTC 2 cut(s) 513, 760
Eco130I CCWWGG 2 cut(s) 86, 123
Eco24I GRGCYC 1 cut(s) 593
Eco47I GGWCC 3 cut(s) 293, 391, 565
Eco47III AGCGCT 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 561
EcoO109I RGGNCCY 3 cut(s) 299, 391, 565
EcoRII CCWGG 2 cut(s) 199, 567
EcoT14I CCWWGG 2 cut(s) 86, 123
EcoT38I GRGCYC 1 cut(s) 593
ErhI CCWWGG 2 cut(s) 86, 123
FaeI CATG 1 cut(s) 90
FaiI YATR 4 cut(s) 88, 362, 509, 534
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 4 cut(s) 24, 169, 306, 404
FatI CATG 1 cut(s) 86
FblI GTMKAC 1 cut(s) 855
FokI GGATG 2 cut(s) 483, 540
FriOI GRGCYC 1 cut(s) 593
FspBI CTAG 5 cut(s) 36, 410, 635, 815, 884
GlaI GCGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 85, 143, 301
HapII CCGG 4 cut(s) 7, 236, 296, 423
HhaI GCGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 90
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 373
HinfI GANTC 1 cut(s) 631
HpaII CCGG 4 cut(s) 7, 236, 296, 423
HphI GGTGA 2 cut(s) 250, 562
Hpy166II GTNNAC 2 cut(s) 856, 881
Hpy188I TCNGA 5 cut(s) 189, 208, 641, 805, 910
Hpy188III TCNNGA 1 cut(s) 575
Hpy8I GTNNAC 2 cut(s) 856, 881
HpyAV CCTTC 3 cut(s) 253, 257, 320
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 4 cut(s) 371, 861, 881, 903
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 784, 824, 827, 833, 836
HpyF3I CTNAG 3 cut(s) 561, 761, 831
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 1 cut(s) 90
HspAI GCGC 1 cut(s) 108
KflI GGGWCCC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 93, 286, 447, 913
LmnI GCTCC 2 cut(s) 9, 196
Lsp1109I GCAGC 8 cut(s) 81, 112, 355, 377, 425, 814, 830, 833
LweI GCATC 1 cut(s) 660
MaeI CTAG 5 cut(s) 36, 410, 635, 815, 884
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 334, 476, 575
MalI GATC 4 cut(s) 95, 288, 449, 915
MboI GATC 4 cut(s) 93, 286, 447, 913
MboII GAAGA 4 cut(s) 530, 777, 782, 858
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 3 cut(s) 360, 593, 883
MluCI AATT 4 cut(s) 210, 459, 773, 782
MlyI GAGTC 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 8 cut(s) 155, 208, 314, 405, 556, 691, 826, 884
MseI TTAA 4 cut(s) 378, 455, 603, 780
MspA1I CMGCKG 3 cut(s) 368, 416, 827
MspCI CTTAAG 1 cut(s) 454
MspI CCGG 4 cut(s) 7, 236, 296, 423
MspR9I CCNGG 4 cut(s) 8, 201, 297, 569
MvaI CCWGG 2 cut(s) 201, 569
MwoI GCNNNNNNNGC 6 cut(s) 97, 784, 824, 827, 833, 836
NciI CCSGG 2 cut(s) 8, 297
NcoI CCATGG 1 cut(s) 86
NdeII GATC 4 cut(s) 93, 286, 447, 913
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 8 cut(s) 198, 219, 268, 294, 300, 392, 393, 421
NmuCI GTSAC 1 cut(s) 575
PinAI ACCGGT 1 cut(s) 235
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PpuMI RGGWCCY 2 cut(s) 391, 565
PshAI GACNNNNGTC 1 cut(s) 635
Psp5II RGGWCCY 2 cut(s) 391, 565
Psp6I CCWGG 2 cut(s) 199, 567
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 2 cut(s) 199, 567
PspN4I GGNNCC 8 cut(s) 198, 219, 268, 294, 300, 392, 393, 421
PspPI GGNCC 5 cut(s) 83, 293, 299, 391, 565
PspPPI RGGWCCY 2 cut(s) 391, 565
PstI CTGCAG 1 cut(s) 863
PstNI CAGNNNCTG 1 cut(s) 827
PsuI RGATCY 1 cut(s) 93
PvuII CAGCTG 2 cut(s) 368, 416
RsaI GTAC 2 cut(s) 248, 275
RsaNI GTAC 2 cut(s) 247, 274
SaqAI TTAA 4 cut(s) 378, 455, 603, 780
Sau3AI GATC 4 cut(s) 93, 286, 447, 913
Sau96I GGNCC 5 cut(s) 83, 293, 299, 391, 565
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 4 cut(s) 8, 201, 297, 569
SduI GDGCHC 3 cut(s) 360, 593, 883
SfaNI GCATC 1 cut(s) 660
SfcI CTRYAG 1 cut(s) 859
SinI GGWCC 3 cut(s) 293, 391, 565
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 4 cut(s) 210, 459, 773, 782
SsiI CCGC 3 cut(s) 174, 825, 836
SspMI CTAG 5 cut(s) 36, 410, 635, 815, 884
StyD4I CCNGG 4 cut(s) 6, 199, 295, 567
StyI CCWWGG 2 cut(s) 86, 123
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 483
TasI AATT 4 cut(s) 210, 459, 773, 782
TatI WGTACW 2 cut(s) 246, 273
TauI GCSGC 2 cut(s) 827, 839
Tru1I TTAA 4 cut(s) 378, 455, 603, 780
Tru9I TTAA 4 cut(s) 378, 455, 603, 780
TscAI CASTG 2 cut(s) 672, 699
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 8 cut(s) 69, 100, 365, 368, 413, 818, 821, 827
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 1 cut(s) 667
TspGWI ACGGA 2 cut(s) 806, 858
TspRI CASTG 2 cut(s) 672, 699
Vha464I CTTAAG 1 cut(s) 454
VneI GTGCAC 1 cut(s) 879
VpaK11BI GGWCC 3 cut(s) 293, 391, 565
XapI RAATTY 1 cut(s) 459
XmiI GTMKAC 1 cut(s) 855
XspI CTAG 5 cut(s) 36, 410, 635, 815, 884
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.