Rh2CG246700

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004039
Physical Location & Seq
Reverse (-)
25869258 .. 25872252
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG246700.1

Sequence Viewer

Length: 861 bp
ATGGCGACCGCCGCCAATCCAAAACGTCCGCCGCCGACCTCGGACAAAATGAACGCCAAGGTCTTCCTCTACTCCCTTCTTCTGGCTCTCCAATACGGCGCTCAGCCTCTCATCTCCAAGCGCTTCATCAGAAGAGAAGTGATCGTAACGTCGTCTGTTCTGACGTGTGAGGTAGCCAAGGTCATATGTGCCCTAATTTTCATGGCCAGAGACGGGAGCTTGAAGAAGGTCTACAAAGAGTGGACTTTGGTTGGTGCGTTGACCGCTTCTGGGCTTCCCGCTGCCATTTATGCACTGCAGAATAGTTTGCTTCAGATTTCGTACAAGAATCTAGATTCTTTAACCTTCTCAATGCTCAACCAGACTAAGATCATTTTTACTGCTATCTGTACTTATTTGATATTGAGGCAGAAGCAATCGATTCAACAAGTCGGGGCGCTTTTCTTGTTGATTATTGCAGCTGTTCTTTTAAGTTTCGGGGAAGGGTCGAGCAAAAGGTCTAGTGGTGGCAATGCCGACCAAATATTGTTTCATGGGATTATTCCTGTGTTGGTTGCTTCTGTGCTTTCGGGTTTGGCGTCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTGTGCATGTTGGTGAGTACTGCTAAGTCTCCCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGACTTGGGTAATGATCATATTGAAATTTCATGTTTCCCTCTATTTTTTGTATATTGGCTTGATTCCTGTGGAGTTTAATTTGTTGGCATACTCAGAACCACCACAATCATTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

286

Amino Acids

31.36

Weight (kDa)

9.53

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 22 - 158 9.7e-08 EamA-like transporter family
Nuc_sug_transp PF04142 26 - 256 5.1e-25 Nucleotide-sugar transporter
PUNUT PF16913 95 - 222 1.3e-10 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AciI CCGC 6 cut(s) 9, 12, 29, 32, 264, 279
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 578
AfaI GTAC 4 cut(s) 323, 391, 626, 679
AfeI AGCGCT 1 cut(s) 122
AfiI CCNNNNNNNGG 3 cut(s) 82, 213, 270
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 3 cut(s) 223, 425, 766
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 1 cut(s) 603
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AluBI AGCT 3 cut(s) 219, 461, 704
AluI AGCT 3 cut(s) 219, 461, 704
Alw26I GTCTC 2 cut(s) 204, 693
Aor51HI AGCGCT 1 cut(s) 122
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 281, 458
ApoI RAATTY 1 cut(s) 767
AspLEI GCGC 3 cut(s) 101, 123, 439
AsuHPI GGTGA 1 cut(s) 685
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 206
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbsI GAAGAC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 268, 470
BccI CCATC 2 cut(s) 689, 726
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 605
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 2 cut(s) 204, 693
BfaI CTAG 2 cut(s) 332, 501
BfmI CTRYAG 2 cut(s) 296, 636
BfoI RGCGCY 3 cut(s) 102, 124, 440
BisI GCNGC 4 cut(s) 12, 32, 282, 459
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 4 cut(s) 13, 33, 283, 460
BmcAI AGTACT 1 cut(s) 679
Bme1390I CCNGG 1 cut(s) 605
BmgBI CACGTC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 4 cut(s) 39, 57, 177, 603
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 213, 270
Bse3DI GCAATG 1 cut(s) 517
BseBI CCWGG 1 cut(s) 605
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 4 cut(s) 39, 57, 177, 603
BseGI GGATG 1 cut(s) 737
BseLI CCNNNNNNNGG 3 cut(s) 82, 213, 270
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 2 cut(s) 116, 849
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 2 cut(s) 268, 470
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 9
BslI CCNNNNNNNGG 3 cut(s) 82, 213, 270
BsmAI GTCTC 2 cut(s) 204, 693
BsmBI CGTCTC 1 cut(s) 204
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 3 cut(s) 141, 369, 756
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 6 cut(s) 9, 12, 29, 32, 264, 279
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 2 cut(s) 115, 848
BspDI ATCGAT 1 cut(s) 419
BspMAI CTGCAG 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 39, 57, 177, 603
BssMI GATC 3 cut(s) 141, 369, 756
BssNI GRCGYC 1 cut(s) 578
BssT1I CCWWGG 2 cut(s) 57, 177
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 578
BstDEI CTNAG 4 cut(s) 102, 366, 684, 835
BstF5I GGATG 1 cut(s) 737
BstH2I RGCGCY 3 cut(s) 102, 124, 440
BstHHI GCGC 3 cut(s) 101, 123, 439
BstKTI GATC 3 cut(s) 144, 372, 759
BstMAI GTCTC 2 cut(s) 204, 693
BstMBI GATC 3 cut(s) 141, 369, 756
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 11, 263, 290
BstNI CCWGG 1 cut(s) 605
BstNSI RCATGY 1 cut(s) 670
BstSCI CCNGG 1 cut(s) 603
BstSFI CTRYAG 2 cut(s) 296, 636
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 268, 470
BstV2I GAAGAC 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 419
BsuRI GGCC 1 cut(s) 206
BsuTUI ATCGAT 1 cut(s) 419
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 737
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 293
CfoI GCGC 3 cut(s) 101, 123, 439
ClaI ATCGAT 1 cut(s) 419
CseI GACGC 1 cut(s) 567
Csp6I GTAC 4 cut(s) 322, 390, 625, 678
CspCI CAANNNNNGTGG 1 cut(s) 834
CviAII CATG 5 cut(s) 202, 533, 667, 716, 773
CviQI GTAC 4 cut(s) 322, 390, 625, 678
DdeI CTNAG 4 cut(s) 102, 366, 684, 835
DpnI GATC 3 cut(s) 143, 371, 758
DpnII GATC 3 cut(s) 141, 369, 756
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 18
Eco130I CCWWGG 2 cut(s) 57, 177
Eco47III AGCGCT 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 603
EcoT14I CCWWGG 2 cut(s) 57, 177
ErhI CCWWGG 2 cut(s) 57, 177
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 5 cut(s) 205, 536, 670, 719, 776
FatI CATG 5 cut(s) 201, 532, 666, 715, 772
FauI CCCGC 1 cut(s) 286
FauNDI CATATG 1 cut(s) 185
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 4 cut(s) 12, 32, 282, 459
FokI GGATG 1 cut(s) 744
Fsp4HI GCNGC 4 cut(s) 12, 32, 282, 459
FspBI CTAG 2 cut(s) 332, 501
GlaI GCGC 3 cut(s) 100, 122, 438
GluI GCNGC 4 cut(s) 12, 32, 282, 459
HaeII RGCGCY 3 cut(s) 102, 124, 440
HaeIII GGCC 1 cut(s) 206
HgaI GACGC 1 cut(s) 567
HhaI GCGC 3 cut(s) 101, 123, 439
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 5 cut(s) 205, 536, 670, 719, 776
Hin6I GCGC 3 cut(s) 99, 121, 437
HinP1I GCGC 3 cut(s) 99, 121, 437
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 5 cut(s) 328, 335, 421, 736, 805
HphI GGTGA 1 cut(s) 685
Hpy166II GTNNAC 3 cut(s) 232, 243, 261
Hpy188I TCNGA 6 cut(s) 43, 131, 162, 315, 710, 838
Hpy188III TCNNGA 2 cut(s) 332, 692
Hpy8I GTNNAC 3 cut(s) 232, 243, 261
Hpy99I CGWCG 2 cut(s) 154, 625
HpyAV CCTTC 4 cut(s) 86, 220, 355, 476
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4IV ACGT 3 cut(s) 25, 149, 164
HpyCH4V TGCA 4 cut(s) 293, 298, 458, 666
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 263, 290
HpyF3I CTNAG 4 cut(s) 102, 366, 684, 835
HpySE526I ACGT 3 cut(s) 25, 149, 164
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 5 cut(s) 205, 536, 670, 719, 776
HspAI GCGC 3 cut(s) 99, 121, 437
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 3 cut(s) 141, 369, 756
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 8 cut(s) 68, 220, 255, 374, 558, 590, 617, 822
Lsp1109I GCAGC 2 cut(s) 268, 470
MaeI CTAG 2 cut(s) 332, 501
MaeII ACGT 3 cut(s) 25, 149, 164
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 143, 371, 758
MboI GATC 3 cut(s) 141, 369, 756
MboII GAAGA 4 cut(s) 55, 71, 144, 235
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 3 cut(s) 195, 767, 820
MluNI TGGCCA 1 cut(s) 206
MlyI GAGTC 1 cut(s) 730
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 7 cut(s) 49, 77, 117, 163, 399, 592, 791
Mox20I TGGCCA 1 cut(s) 206
MscI TGGCCA 1 cut(s) 206
MseI TTAA 4 cut(s) 341, 470, 609, 819
MslI CAYNNNNRTG 1 cut(s) 671
Msp20I TGGCCA 1 cut(s) 206
MspA1I CMGCKG 2 cut(s) 281, 461
MspR9I CCNGG 1 cut(s) 605
MvaI CCWGG 1 cut(s) 605
MwoI GCNNNNNNNGC 3 cut(s) 11, 263, 290
NdeI CATATG 1 cut(s) 185
NdeII GATC 3 cut(s) 141, 369, 756
NlaIII CATG 5 cut(s) 205, 536, 670, 719, 776
NspI RCATGY 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 575
PfeI GAWTC 4 cut(s) 328, 335, 421, 805
PkrI GCNGC 4 cut(s) 13, 33, 283, 460
PleI GAGTC 1 cut(s) 730
PpsI GAGTC 1 cut(s) 730
Psp6I CCWGG 1 cut(s) 603
PspGI CCWGG 1 cut(s) 603
PstI CTGCAG 1 cut(s) 300
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 4 cut(s) 323, 391, 626, 679
RsaNI GTAC 4 cut(s) 322, 390, 625, 678
RseI CAYNNNNRTG 1 cut(s) 671
SaqAI TTAA 4 cut(s) 341, 470, 609, 819
SatI GCNGC 4 cut(s) 12, 32, 282, 459
Sau3AI GATC 3 cut(s) 141, 369, 756
ScaI AGTACT 1 cut(s) 679
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 1 cut(s) 605
SduI GDGCHC 1 cut(s) 193
SfcI CTRYAG 2 cut(s) 296, 636
SmiMI CAYNNNNRTG 1 cut(s) 671
Sse9I AATT 3 cut(s) 195, 767, 820
SsiI CCGC 6 cut(s) 9, 12, 29, 32, 264, 279
SspI AATATT 1 cut(s) 525
SspMI CTAG 2 cut(s) 332, 501
StyD4I CCNGG 1 cut(s) 603
StyI CCWWGG 2 cut(s) 57, 177
TaaI ACNGT 1 cut(s) 637
TaiI ACGT 3 cut(s) 28, 152, 167
TaqI TCGA 2 cut(s) 419, 488
TasI AATT 3 cut(s) 195, 767, 820
TatI WGTACW 2 cut(s) 389, 677
TauI GCSGC 2 cut(s) 14, 34
TfiI GAWTC 4 cut(s) 328, 335, 421, 805
Tru1I TTAA 4 cut(s) 341, 470, 609, 819
Tru9I TTAA 4 cut(s) 341, 470, 609, 819
TscAI CASTG 1 cut(s) 300
TseI GCWGC 2 cut(s) 281, 458
TspDTI ATGAA 5 cut(s) 65, 115, 190, 521, 761
TspRI CASTG 1 cut(s) 300
XapI RAATTY 1 cut(s) 767
XbaI TCTAGA 1 cut(s) 331
XceI RCATGY 1 cut(s) 670
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 2 cut(s) 332, 501
ZrmI AGTACT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.