Rh3BG154800

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004039
Physical Location & Seq
Forward (+)
13165754 .. 13176128
10375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG154800.1

Sequence Viewer

Length: 594 bp
ATGGAATGTAGGAAGGGGATCTTCATACTCGAGAGGAGGCAGAAGCAATCGATTCAACAAGTCGGGGCGCTTTTCTTGTTGATTATTGCAGCTGTTCTTTTAAGTTTCGGCGAAGGGTCGAGCAAAAGGTCCAGTGGTGGCAATCCTGACCAGATATTGTTTCATGGGATTATTCCTGTGTTGGTTGCTTCTGTGCTTTCGGGTTTGGCATCCTCTCTGTGTCAATGGGCCTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTGTGCGTGTTGGTGAGTACTGCTAAGTCTCCCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGACTTGGGTTGCACTAGGACTGGGTTCATTTTTTAAGGGAAACCACCTTCATTGTATTGTCTGGCATCTCTTCCCCTCATGTTGTAATCACGAACGTGATTGGCCTAATTTGGGGTTCTATTACGACGGAATGGATTCAAGTGGAGAATATGGTGTGCTTGCTGAGTGTTTCCAGCTAAAAACTGAGCTAACGATTGGTATTCTACAGATTAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

197

Amino Acids

21.71

Weight (kDa)

7.63

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 9 - 130 2.9e-08 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 26
AfaI GTAC 2 cut(s) 257, 310
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 2 cut(s) 56, 513
AjnI CCWGG 1 cut(s) 234
AleI CACNNNNGTG 1 cut(s) 468
AluBI AGCT 4 cut(s) 92, 335, 550, 562
AluI AGCT 4 cut(s) 92, 335, 550, 562
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 2 cut(s) 228, 476
ApeKI GCWGC 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 508
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 129, 228
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 101
BccI CCATC 2 cut(s) 320, 357
BciT130I CCWGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 2 cut(s) 267, 578
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmcAI AGTACT 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 129, 228
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 2 cut(s) 218, 448
BmuI ACTGGG 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 2 cut(s) 132, 399
BseBI CCWGG 1 cut(s) 236
BseCI ATCGAT 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 209, 368
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 2 cut(s) 528, 549
BseNI ACTGG 2 cut(s) 132, 399
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 2 cut(s) 230, 478
BshVI ATCGAT 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 324
BsnI GGCC 2 cut(s) 230, 478
BsoBI CYCGRG 1 cut(s) 29
Bsp143I GATC 1 cut(s) 18
BspANI GGCC 2 cut(s) 230, 478
BspCNI CTCAG 2 cut(s) 529, 550
BspDI ATCGAT 1 cut(s) 50
BspPI GGATC 1 cut(s) 26
BsrI ACTGG 2 cut(s) 132, 399
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 3 cut(s) 315, 537, 558
BstF5I GGATG 2 cut(s) 209, 368
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 2 cut(s) 267, 578
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 50
BsuRI GGCC 2 cut(s) 230, 478
BsuTUI ATCGAT 1 cut(s) 50
BtsCI GGATG 2 cut(s) 209, 368
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 534
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 129, 228
ClaI ATCGAT 1 cut(s) 50
Csp6I GTAC 2 cut(s) 256, 309
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 3 cut(s) 164, 347, 453
CviJI RGCY 6 cut(s) 92, 230, 335, 478, 550, 562
CviKI_1 RGCY 6 cut(s) 92, 230, 335, 478, 550, 562
CviQI GTAC 2 cut(s) 256, 309
DdeI CTNAG 3 cut(s) 315, 537, 558
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 234
FaeI CATG 3 cut(s) 167, 350, 456
FaiI YATR 6 cut(s) 26, 165, 348, 360, 454, 525
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 3 cut(s) 163, 346, 452
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 196, 375
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 389
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 2 cut(s) 230, 478
HhaI GCGC 1 cut(s) 70
Hin1II CATG 3 cut(s) 167, 350, 456
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 3 cut(s) 52, 367, 509
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 341
Hpy188III TCNNGA 4 cut(s) 31, 146, 323, 464
Hpy99I CGWCG 2 cut(s) 256, 503
HpyAV CCTTC 3 cut(s) 7, 107, 431
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 2 cut(s) 89, 386
HpyF3I CTNAG 3 cut(s) 315, 537, 558
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 3 cut(s) 167, 350, 456
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 18
LpnPI CCDG 9 cut(s) 145, 159, 164, 189, 221, 248, 380, 421, 560
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 2 cut(s) 218, 448
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 469
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 13, 436
MflI RGATCY 1 cut(s) 18
MluCI AATT 1 cut(s) 481
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 5 cut(s) 27, 30, 223, 241, 460
MroXI GAANNNNTTC 1 cut(s) 508
MseI TTAA 5 cut(s) 101, 240, 408, 585, 592
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 236
NdeII GATC 1 cut(s) 18
NlaIII CATG 3 cut(s) 167, 350, 456
OliI CACNNNNGTG 1 cut(s) 468
PaeR7I CTCGAG 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 508
PfeI GAWTC 2 cut(s) 52, 509
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspPI GGNCC 2 cut(s) 129, 228
PsuI RGATCY 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 2 cut(s) 257, 310
RsaNI GTAC 2 cut(s) 256, 309
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 5 cut(s) 101, 240, 408, 585, 592
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 2 cut(s) 129, 228
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 236
SetI ASST 8 cut(s) 94, 131, 240, 337, 423, 472, 552, 564
SfaNI GCATC 2 cut(s) 218, 448
SfcI CTRYAG 2 cut(s) 267, 578
Sfr274I CTCGAG 1 cut(s) 29
SinI GGWCC 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 481
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 472
TaqI TCGA 3 cut(s) 30, 50, 119
TasI AATT 1 cut(s) 481
TatI WGTACW 1 cut(s) 308
TfiI GAWTC 2 cut(s) 52, 509
Tru1I TTAA 5 cut(s) 101, 240, 408, 585, 592
Tru9I TTAA 5 cut(s) 101, 240, 408, 585, 592
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 13, 152, 390, 413
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 508
XspI CTAG 1 cut(s) 389
ZrmI AGTACT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.