MD01G1029800.v1.1

CMP-sialic acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
10747400 .. 10750758
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1029800.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGCGGCCGGAAAGCAAAAAGCTCCGGCGCCGCCGAGCGCAGAGAAAATAAACTCAAGGGTCTGGTTCTACTCCCTTCTACTCACACTCCAGTACGGAGCTCAACCCCTCATCTCCAAACGCTTCACCAGTAGAGAAGTGATCGTGACGTCATCGGTCCTGACGTGCGAGATAGCCAAGATTATCTGTGCCCTAATTTTCATGGCTAGAGACGGCAGCTTGAAGAAGGTGTACAGAGAGTGGACGTTGGTTGGTGCACTGACCGCCTCGGGGCTTCCCGCCGCCATTTACGCATTGCAGAATAGTTTGCTGCAGATTTCTTACAAGAACCTTGATTCGCTCACCTTTTCAATGCTCAACCAGACTAAAATCATTTTCACTGCTCTCTTTACGTATTTGATTTTGAGGCAGAAGCAATCGATTCAACAAATTGGTGCGCTCGTTTTATTGATTATGGCTGCTGTTCTTTTAAGTTTTGGGGAAGGCTCCAAAAAAGGGACTAGTAGTGGCAGTTCTGACCAAATATTGTTTAGAGGGATAATTCCTGTCCTGGTGGCCTCTGTACTCTCAGGTTTGGCATCCTCTTTGTGTCAATGGGCTTCCCAGGTTAAGAAACACTCATCGTATTTGATGACTGTAGAGATGTCTGTTGTGGGAAGTTTATGCCTGTTGGCCAGTACCTCTAAATCTCCAGATGGAGAAGCCATCAGAATACATGGATTTTTTTATGGATGGACTTTGATGACTTGGATCCCAGTCATGTCCAATGCCCTTGGTGGAATTCTTGTTGGCCTAGTCACAAGTTATGCTGGTGGTGTGAAAAAGGGGTTTGTTATTGTTTCTGCTCTTCTTGTTACTGCTATGCTGCAGTTCGTTTTTGAAGGGAAACCACCTTCACTATATTGTCTCCTGGCTCTTCCTCTCGTGGCCAGCAGCATTTCAATATACCAGAAGTATCCATACCGTGTTAAAAAGAAAGAAGCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

329

Amino Acids

35.53

Weight (kDa)

9.76

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 24 - 158 1.1e-06 EamA-like transporter family
Nuc_sug_transp PF04142 26 - 316 3.9e-33 Nucleotide-sugar transporter
PUNUT PF16913 95 - 221 3.8e-12 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 28
AciI CCGC 5 cut(s) 5, 32, 264, 279, 282
AclWI GGATC 2 cut(s) 745, 758
AcoI YGGCCR 3 cut(s) 6, 672, 927
AcsI RAATTY 1 cut(s) 780
AcyI GRCGYC 2 cut(s) 29, 149
AfaI GTAC 4 cut(s) 95, 233, 564, 679
AfiI CCNNNNNNNGG 2 cut(s) 270, 495
AgsI TTSAA 5 cut(s) 223, 351, 425, 881, 942
AhlI ACTAGT 1 cut(s) 500
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 3 cut(s) 549, 603, 909
AluBI AGCT 4 cut(s) 23, 101, 219, 983
AluI AGCT 4 cut(s) 23, 101, 219, 983
Alw21I GWGCWC 2 cut(s) 103, 259
Alw26I GTCTC 2 cut(s) 204, 911
Alw44I GTGCAC 1 cut(s) 255
AlwI GGATC 2 cut(s) 745, 758
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 5 cut(s) 6, 555, 672, 790, 927
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 5 cut(s) 216, 310, 458, 865, 933
ApoI RAATTY 1 cut(s) 780
AspLEI GCGC 3 cut(s) 31, 41, 439
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 118, 334
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 2 cut(s) 193, 259
BalI TGGCCA 2 cut(s) 674, 929
BamHI GGATCC 1 cut(s) 750
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 103
BarI GAAGNNNNNNTAC 4 cut(s) 215, 247, 944, 976
BauI CACGAG 1 cut(s) 923
Bbv12I GWGCWC 2 cut(s) 103, 259
BbvI GCAGC 5 cut(s) 228, 297, 445, 852, 945
BccI CCATC 3 cut(s) 689, 713, 726
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 3 cut(s) 551, 605, 911
BciVI GTATCC 1 cut(s) 966
BcoDI GTCTC 2 cut(s) 204, 911
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 3 cut(s) 207, 501, 794
BfmI CTRYAG 3 cut(s) 311, 636, 866
BfoI RGCGCY 1 cut(s) 32
BfuI GTATCC 1 cut(s) 966
BisI GCNGC 8 cut(s) 6, 32, 217, 282, 311, 459, 866, 934
BlsI GCNGC 8 cut(s) 7, 33, 218, 283, 312, 460, 867, 935
Bme1390I CCNGG 3 cut(s) 551, 605, 911
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 268
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 3 cut(s) 30, 487, 752
BmrFI CCNGG 3 cut(s) 551, 605, 911
BmrI ACTGGG 1 cut(s) 749
BmsI GCATC 1 cut(s) 587
BmuI ACTGGG 1 cut(s) 749
BpmI CTGGAG 2 cut(s) 74, 675
BpuEI CTTGAG 1 cut(s) 40
Bsa29I ATCGAT 1 cut(s) 419
BsaAI YACGTR 1 cut(s) 393
BsaHI GRCGYC 2 cut(s) 29, 149
BsaJI CCNNGG 3 cut(s) 267, 603, 772
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 495
Bse1I ACTGG 4 cut(s) 91, 129, 675, 755
Bse3DI GCAATG 1 cut(s) 293
BseBI CCWGG 3 cut(s) 551, 605, 911
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 3 cut(s) 267, 603, 772
BseGI GGATG 2 cut(s) 578, 737
BseLI CCNNNNNNNGG 2 cut(s) 270, 495
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 4 cut(s) 91, 129, 675, 755
BseSI GKGCMC 2 cut(s) 193, 259
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 5 cut(s) 228, 297, 445, 852, 945
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 5 cut(s) 8, 557, 674, 792, 929
BshNI GGYRCC 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 103, 259
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 2 cut(s) 9, 26
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 2 cut(s) 270, 495
BsmAI GTCTC 2 cut(s) 204, 911
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 511
BsnI GGCC 5 cut(s) 8, 557, 674, 792, 929
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 103, 193, 259
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 2 cut(s) 141, 750
BspACI CCGC 5 cut(s) 5, 32, 264, 279, 282
BspANI GGCC 5 cut(s) 8, 557, 674, 792, 929
BspCNI CTCAG 1 cut(s) 581
BspDI ATCGAT 1 cut(s) 419
BspLI GGNNCC 3 cut(s) 30, 487, 752
BspMAI CTGCAG 2 cut(s) 315, 870
BspPI GGATC 2 cut(s) 745, 758
BspQI GCTCTTC 2 cut(s) 852, 921
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 4 cut(s) 91, 129, 675, 755
BssECI CCNNGG 3 cut(s) 267, 603, 772
BssMI GATC 2 cut(s) 141, 750
BssNI GRCGYC 2 cut(s) 29, 149
BssSI CACGAG 1 cut(s) 923
BssT1I CCWWGG 1 cut(s) 772
Bst2BI CACGAG 1 cut(s) 923
Bst2UI CCWGG 3 cut(s) 551, 605, 911
Bst4CI ACNGT 2 cut(s) 637, 965
Bst6I CTCTTC 2 cut(s) 852, 921
BstACI GRCGYC 2 cut(s) 29, 149
BstAUI TGTACA 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 931
BstDEI CTNAG 1 cut(s) 568
BstF5I GGATG 2 cut(s) 578, 737
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 3 cut(s) 31, 41, 439
BstKTI GATC 2 cut(s) 144, 753
BstMAI GTCTC 2 cut(s) 204, 911
BstMBI GATC 2 cut(s) 141, 750
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 263, 290
BstNI CCWGG 3 cut(s) 551, 605, 911
BstSCI CCNGG 3 cut(s) 549, 603, 909
BstSFI CTRYAG 3 cut(s) 311, 636, 866
BstSLI GKGCMC 2 cut(s) 193, 259
BstSNI TACGTA 1 cut(s) 393
BstV1I GCAGC 5 cut(s) 228, 297, 445, 852, 945
BstX2I RGATCY 1 cut(s) 750
BstYI RGATCY 1 cut(s) 750
BstZI CGGCCG 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 419
BsuI GTATCC 1 cut(s) 966
BsuRI GGCC 5 cut(s) 8, 557, 674, 792, 929
BsuTUI ATCGAT 1 cut(s) 419
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 578, 737
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 257, 378
Cac8I GCNNGC 1 cut(s) 931
CfoI GCGC 3 cut(s) 31, 41, 439
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 419
Csp6I GTAC 4 cut(s) 94, 232, 563, 678
CviAII CATG 3 cut(s) 202, 716, 760
CviQI GTAC 4 cut(s) 94, 232, 563, 678
DdeI CTNAG 1 cut(s) 568
DinI GGCGCC 1 cut(s) 30
DpnI GATC 2 cut(s) 143, 752
DpnII GATC 2 cut(s) 141, 750
EaeI YGGCCR 3 cut(s) 6, 672, 927
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 852, 921
EarI CTCTTC 2 cut(s) 852, 921
Ecl136II GAGCTC 1 cut(s) 101
EclXI CGGCCG 1 cut(s) 6
Eco105I TACGTA 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 772
Eco24I GRGCYC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 157
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 780
EcoRII CCWGG 3 cut(s) 549, 603, 909
EcoT14I CCWWGG 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 103
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 772
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 3 cut(s) 205, 719, 763
FaqI GGGAC 1 cut(s) 511
FatI CATG 3 cut(s) 201, 715, 759
FauI CCCGC 1 cut(s) 286
Fnu4HI GCNGC 8 cut(s) 6, 32, 217, 282, 311, 459, 866, 934
FokI GGATG 2 cut(s) 565, 744
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 8 cut(s) 6, 32, 217, 282, 311, 459, 866, 934
FspBI CTAG 3 cut(s) 207, 501, 794
GlaI GCGC 3 cut(s) 30, 40, 438
GluI GCNGC 8 cut(s) 6, 32, 217, 282, 311, 459, 866, 934
GsuI CTGGAG 2 cut(s) 74, 675
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 5 cut(s) 8, 557, 674, 792, 929
HapII CCGG 2 cut(s) 9, 26
HhaI GCGC 3 cut(s) 31, 41, 439
Hin1I GRCGYC 2 cut(s) 29, 149
Hin1II CATG 3 cut(s) 205, 719, 763
Hin6I GCGC 3 cut(s) 29, 39, 437
HinP1I GCGC 3 cut(s) 29, 39, 437
HindIII AAGCTT 1 cut(s) 981
HinfI GANTC 2 cut(s) 335, 421
HpaII CCGG 2 cut(s) 9, 26
HphI GGTGA 2 cut(s) 118, 334
Hpy166II GTNNAC 3 cut(s) 232, 243, 257
Hpy188I TCNGA 2 cut(s) 517, 710
Hpy188III TCNNGA 3 cut(s) 145, 160, 692
Hpy8I GTNNAC 3 cut(s) 232, 243, 257
HpyAV CCTTC 5 cut(s) 86, 220, 476, 875, 903
HpyCH4III ACNGT 2 cut(s) 637, 965
HpyCH4IV ACGT 4 cut(s) 149, 164, 245, 392
HpyCH4V TGCA 4 cut(s) 257, 298, 313, 868
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 290
HpyF3I CTNAG 1 cut(s) 568
HpySE526I ACGT 4 cut(s) 149, 164, 245, 392
Hsp92I GRCGYC 2 cut(s) 29, 149
Hsp92II CATG 3 cut(s) 205, 719, 763
HspAI GCGC 3 cut(s) 29, 39, 437
KasI GGCGCC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 141, 750
LguI GCTCTTC 2 cut(s) 852, 921
LmnI GCTCC 3 cut(s) 28, 98, 491
Lsp1109I GCAGC 5 cut(s) 228, 297, 445, 852, 945
LweI GCATC 1 cut(s) 587
MaeI CTAG 3 cut(s) 207, 501, 794
MaeII ACGT 4 cut(s) 149, 164, 245, 392
MaeIII GTNAC 3 cut(s) 145, 796, 853
MalI GATC 2 cut(s) 143, 752
MboI GATC 2 cut(s) 141, 750
MboII GAAGA 3 cut(s) 235, 839, 908
MflI RGATCY 1 cut(s) 750
MhlI GDGCHC 3 cut(s) 103, 193, 259
MlsI TGGCCA 2 cut(s) 674, 929
MluCI AATT 4 cut(s) 195, 429, 540, 780
MluNI TGGCCA 2 cut(s) 674, 929
Mly113I GGCGCC 1 cut(s) 29
MnlI CCTC 8 cut(s) 119, 277, 399, 527, 568, 592, 691, 930
Mox20I TGGCCA 2 cut(s) 674, 929
MscI TGGCCA 2 cut(s) 674, 929
MseI TTAA 4 cut(s) 470, 609, 969, 985
Msp20I TGGCCA 2 cut(s) 674, 929
MspI CCGG 2 cut(s) 9, 26
MspR9I CCNGG 3 cut(s) 551, 605, 911
MvaI CCWGG 3 cut(s) 551, 605, 911
MwoI GCNNNNNNNGC 2 cut(s) 263, 290
NarI GGCGCC 1 cut(s) 29
NdeII GATC 2 cut(s) 141, 750
NlaIII CATG 3 cut(s) 205, 719, 763
NlaIV GGNNCC 3 cut(s) 30, 487, 752
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 2 cut(s) 145, 796
PciSI GCTCTTC 2 cut(s) 852, 921
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 2 cut(s) 335, 421
PkrI GCNGC 8 cut(s) 7, 33, 218, 283, 312, 460, 867, 935
PluTI GGCGCC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 103
Psp6I CCWGG 3 cut(s) 549, 603, 909
PspGI CCWGG 3 cut(s) 549, 603, 909
PspN4I GGNNCC 3 cut(s) 30, 487, 752
PspPI GGNCC 1 cut(s) 157
PsrI GAACNNNNNNTAC 2 cut(s) 496, 528
PstI CTGCAG 2 cut(s) 315, 870
PsuI RGATCY 1 cut(s) 750
RsaI GTAC 4 cut(s) 95, 233, 564, 679
RsaNI GTAC 4 cut(s) 94, 232, 563, 678
SacI GAGCTC 1 cut(s) 103
SapI GCTCTTC 2 cut(s) 852, 921
SaqAI TTAA 4 cut(s) 470, 609, 969, 985
SatI GCNGC 8 cut(s) 6, 32, 217, 282, 311, 459, 866, 934
Sau3AI GATC 2 cut(s) 141, 750
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 3 cut(s) 551, 605, 911
SduI GDGCHC 3 cut(s) 103, 193, 259
SfaNI GCATC 1 cut(s) 587
SfcI CTRYAG 3 cut(s) 311, 636, 866
SfoI GGCGCC 1 cut(s) 30
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SnaBI TACGTA 1 cut(s) 393
SpeI ACTAGT 1 cut(s) 500
Sse9I AATT 4 cut(s) 195, 429, 540, 780
SsiI CCGC 5 cut(s) 5, 32, 264, 279, 282
SspDI GGCGCC 1 cut(s) 28
SspI AATATT 1 cut(s) 525
SspMI CTAG 3 cut(s) 207, 501, 794
SstI GAGCTC 1 cut(s) 103
StyD4I CCNGG 3 cut(s) 549, 603, 909
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 2 cut(s) 637, 965
TaiI ACGT 4 cut(s) 152, 167, 248, 395
TaqI TCGA 1 cut(s) 419
TaqII GACCGA 1 cut(s) 145
TasI AATT 4 cut(s) 195, 429, 540, 780
TatI WGTACW 2 cut(s) 231, 562
TauI GCSGC 3 cut(s) 8, 34, 284
TfiI GAWTC 2 cut(s) 335, 421
Tru1I TTAA 4 cut(s) 470, 609, 969, 985
Tru9I TTAA 4 cut(s) 470, 609, 969, 985
TscAI CASTG 2 cut(s) 264, 385
TseFI GTSAC 2 cut(s) 145, 796
TseI GCWGC 5 cut(s) 216, 310, 458, 865, 933
Tsp45I GTSAC 2 cut(s) 145, 796
TspDTI ATGAA 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 264, 385
VneI GTGCAC 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 780
XspI CTAG 3 cut(s) 207, 501, 794
ZraI GACGTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.