Rw2G040960

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004039
Physical Location & Seq
Forward (+)
66729301 .. 66730921
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G040960.1

Sequence Viewer

Length: 591 bp
ATGGGAGTTACTGGGTTAGCTAATTGTGCTGTTCTTTTAAGTTTCGGCGAAGGGTCGAGCAAAAGGTCCAGTGGTGGCAATCCTGACCAGATATTGTTTCATGGGATTATTCCTGTGTTGGTTGCTTCTGTGCTTTCGGGTTTGGCATCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTGTGCATGTTGGTGAGTACTGCTAAGTCTCCCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGACTTGGGTAATGATCATATTGAAATTTCATGTTTCCCTCTATTTTTTGTATATTAAATGCCAAATGGTTGGTAAACTGTTCTATGCATACACCTGCTATTTGGGATCAGTCATTTTGGGGTTTGTTATTGTTTCTGCGCTTCTTGTTACGGCTTTGCTGCAGTTCATTTTTGAAGGGAAACCACCTTCATTGTATTGTCTGGCATCTCTTCCCCTCGTGGTTAGCAGCATTTCGATATACCAGAAATATCCTTACCAAGTTAAAAAGAAAGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

196

Amino Acids

21.41

Weight (kDa)

9.2

Isoelectric Point (pI)

27.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 25 - 119 1.7e-06 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 413
Acc36I ACCTGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 1 cut(s) 335
AfaI GTAC 2 cut(s) 194, 247
AgsI TTSAA 2 cut(s) 334, 485
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 20, 272
AluI AGCT 2 cut(s) 20, 272
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 469, 537
ApoI RAATTY 1 cut(s) 335
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 66
BauI CACGAG 1 cut(s) 527
BbvI GCAGC 2 cut(s) 456, 549
BccI CCATC 2 cut(s) 257, 294
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 1 cut(s) 173
BclI TGATCA 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 261
BfmI CTRYAG 2 cut(s) 204, 470
BfuAI ACCTGC 1 cut(s) 413
BisI GCNGC 2 cut(s) 470, 538
BlsI GCNGC 2 cut(s) 471, 539
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 155, 524
BmuI ACTGGG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 16, 69
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 146, 305
BseNI ACTGG 2 cut(s) 16, 69
BseXI GCAGC 2 cut(s) 456, 549
BsmAI GTCTC 1 cut(s) 261
Bsp143I GATC 2 cut(s) 324, 416
BspMAI CTGCAG 1 cut(s) 474
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 1 cut(s) 424
BsrI ACTGG 2 cut(s) 16, 69
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 324, 416
BssSI CACGAG 1 cut(s) 527
Bst2BI CACGAG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 205, 390
Bst6I CTCTTC 1 cut(s) 525
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 146, 305
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 2 cut(s) 327, 419
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 2 cut(s) 324, 416
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 2 cut(s) 204, 470
BstV1I GCAGC 2 cut(s) 456, 549
BstXI CCANNNNNNTGG 1 cut(s) 380
BtsCI GGATG 2 cut(s) 146, 305
BtsIMutI CAGTG 1 cut(s) 76
BveI ACCTGC 1 cut(s) 413
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 2 cut(s) 193, 246
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviAII CATG 4 cut(s) 101, 235, 284, 341
CviJI RGCY 4 cut(s) 20, 167, 272, 464
CviKI_1 RGCY 4 cut(s) 20, 167, 272, 464
CviQI GTAC 2 cut(s) 193, 246
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 326, 418
DpnII GATC 2 cut(s) 324, 416
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 400
FaeI CATG 4 cut(s) 104, 238, 287, 344
FatI CATG 4 cut(s) 100, 234, 283, 340
FbaI TGATCA 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 470, 538
FokI GGATG 2 cut(s) 133, 312
Fsp4HI GCNGC 2 cut(s) 470, 538
GlaI GCGC 1 cut(s) 450
GluI GCNGC 2 cut(s) 470, 538
HhaI GCGC 1 cut(s) 451
Hin1II CATG 4 cut(s) 104, 238, 287, 344
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 2 cut(s) 304, 584
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 2 cut(s) 83, 260
Hpy8I GTNNAC 1 cut(s) 386
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 3 cut(s) 44, 479, 507
HpyCH4III ACNGT 2 cut(s) 205, 390
HpyCH4V TGCA 3 cut(s) 234, 398, 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 4 cut(s) 104, 238, 287, 344
HspAI GCGC 1 cut(s) 449
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 324, 416
LpnPI CCDG 9 cut(s) 82, 96, 101, 126, 158, 185, 418, 497, 566
Lsp1109I GCAGC 2 cut(s) 456, 549
LweI GCATC 2 cut(s) 155, 524
MaeIII GTNAC 2 cut(s) 7, 457
MalI GATC 2 cut(s) 326, 418
MboI GATC 2 cut(s) 324, 416
MboII GAAGA 1 cut(s) 512
MluCI AATT 2 cut(s) 22, 335
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 3 cut(s) 160, 359, 536
Mph1103I ATGCAT 1 cut(s) 400
MseI TTAA 5 cut(s) 38, 177, 366, 573, 589
MslI CAYNNNNRTG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 2 cut(s) 324, 416
NlaIII CATG 4 cut(s) 104, 238, 287, 344
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 584
PkrI GCNGC 2 cut(s) 471, 539
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspPI GGNCC 1 cut(s) 66
PstI CTGCAG 1 cut(s) 474
RsaI GTAC 2 cut(s) 194, 247
RsaNI GTAC 2 cut(s) 193, 246
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 5 cut(s) 38, 177, 366, 573, 589
SatI GCNGC 2 cut(s) 470, 538
Sau3AI GATC 2 cut(s) 324, 416
Sau96I GGNCC 1 cut(s) 66
ScaI AGTACT 1 cut(s) 247
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 173
SetI ASST 6 cut(s) 22, 68, 177, 274, 407, 499
SfaNI GCATC 2 cut(s) 155, 524
SfcI CTRYAG 2 cut(s) 204, 470
SinI GGWCC 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 2 cut(s) 22, 335
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 205, 390
TaqI TCGA 2 cut(s) 56, 545
TasI AATT 2 cut(s) 22, 335
TatI WGTACW 1 cut(s) 245
TfiI GAWTC 1 cut(s) 584
Tru1I TTAA 5 cut(s) 38, 177, 366, 573, 589
Tru9I TTAA 5 cut(s) 38, 177, 366, 573, 589
TscAI CASTG 1 cut(s) 76
TseI GCWGC 2 cut(s) 469, 537
TspDTI ATGAA 4 cut(s) 89, 329, 466, 489
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 1 cut(s) 335
XceI RCATGY 1 cut(s) 238
ZrmI AGTACT 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.