Rw7G020120

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004039
Physical Location & Seq
Forward (+)
22629275 .. 22632275
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020120.1

Sequence Viewer

Length: 492 bp
ATGTCTATTCTATACAAATTTTATTACATTCTAATTCCAAGAATCAAAGGCGCCGGCTCTTCACTCTTGGTTTGCTCGCTATCAATCGTTTGTGTAAATGTCCATTTCACCATTAATTTCACTGCTATCTGTACTTATTTGATATTGAGGCAGAAGCAATCGATTCAACAAGTCGGGGCGCTTTTCTTGTTGATTATTGCAGCTGTTCTTTTAAGTTTCGGCGAAGGGTCGAGCAAAAGGTCCAGTGGTGGCAATCCTGACCAGATATTGTTTCATGGGATTATTCCTGTGTTGGTTGCTTCTGTGCTTTCGGGTTTGGCATCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTGTGCATGTTGGTGAGTACTGCTAAGTCTCCCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGACTTGG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

164

Amino Acids

17.85

Weight (kDa)

9.35

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 31 - 164 4.3e-12 Nucleotide-sugar transporter
PUNUT PF16913 31 - 136 8.2e-07 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 3 cut(s) 133, 368, 421
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 2 cut(s) 203, 446
AluI AGCT 2 cut(s) 203, 446
Alw26I GTCTC 1 cut(s) 435
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 17
AseI ATTAAT 1 cut(s) 114
AspLEI GCGC 2 cut(s) 53, 181
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 100, 427
AvaII GGWCC 1 cut(s) 240
BanI GGYRCC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 212
BccI CCATC 2 cut(s) 431, 468
BciT130I CCWGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 378
BfoI RGCGCY 2 cut(s) 54, 182
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 421
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 347
BseCI ATCGAT 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 320, 479
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 161
BsiSI CCGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 435
BspDI ATCGAT 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 345
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 64
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 55, 77
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 2 cut(s) 320, 479
BstH2I RGCGCY 2 cut(s) 54, 182
BstHHI GCGC 2 cut(s) 53, 181
BstMAI GTCTC 1 cut(s) 435
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 212
Bsu15I ATCGAT 1 cut(s) 161
BsuTUI ATCGAT 1 cut(s) 161
BtsCI GGATG 2 cut(s) 320, 479
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 250
Cac8I GCNNGC 2 cut(s) 55, 77
CfoI GCGC 2 cut(s) 53, 181
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 240
ClaI ATCGAT 1 cut(s) 161
Csp6I GTAC 3 cut(s) 132, 367, 420
CviAII CATG 3 cut(s) 275, 409, 458
CviJI RGCY 4 cut(s) 57, 203, 341, 446
CviKI_1 RGCY 4 cut(s) 57, 203, 341, 446
CviQI GTAC 3 cut(s) 132, 367, 420
DdeI CTNAG 1 cut(s) 426
DinI GGCGCC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 345
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
FaeI CATG 3 cut(s) 278, 412, 461
FaiI YATR 5 cut(s) 13, 276, 410, 459, 471
FatI CATG 3 cut(s) 274, 408, 457
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 2 cut(s) 307, 486
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 2 cut(s) 52, 180
GluI GCNGC 1 cut(s) 201
HaeII RGCGCY 2 cut(s) 54, 182
HapII CCGG 1 cut(s) 54
HhaI GCGC 2 cut(s) 53, 181
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 3 cut(s) 278, 412, 461
Hin6I GCGC 2 cut(s) 51, 179
HinP1I GCGC 2 cut(s) 51, 179
HinfI GANTC 3 cut(s) 42, 163, 478
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 100, 427
Hpy188I TCNGA 1 cut(s) 452
Hpy188III TCNNGA 2 cut(s) 257, 434
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4V TGCA 2 cut(s) 200, 408
HpyF3I CTNAG 1 cut(s) 426
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 3 cut(s) 278, 412, 461
HspAI GCGC 2 cut(s) 51, 179
KasI GGCGCC 1 cut(s) 50
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 67, 256, 270, 275, 300, 332, 359
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 329
MboII GAAGA 1 cut(s) 51
MluCI AATT 3 cut(s) 17, 33, 115
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 2 cut(s) 141, 334
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 3 cut(s) 114, 212, 351
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
NaeI GCCGGC 1 cut(s) 55
NarI GGCGCC 1 cut(s) 51
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 3 cut(s) 278, 412, 461
NlaIV GGNNCC 1 cut(s) 52
NspI RCATGY 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 42, 163
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 472
PluTI GGCGCC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 472
PshBI ATTAAT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 133, 368, 421
RsaNI GTAC 3 cut(s) 132, 367, 420
RseI CAYNNNNRTG 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 64
SaqAI TTAA 3 cut(s) 114, 212, 351
SatI GCNGC 1 cut(s) 201
Sau96I GGNCC 1 cut(s) 240
ScaI AGTACT 1 cut(s) 421
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 1 cut(s) 347
SetI ASST 4 cut(s) 205, 242, 351, 448
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 1 cut(s) 378
SfoI GGCGCC 1 cut(s) 52
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 3 cut(s) 17, 33, 115
SspDI GGCGCC 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 379
TaqI TCGA 2 cut(s) 161, 230
TasI AATT 3 cut(s) 17, 33, 115
TatI WGTACW 2 cut(s) 131, 419
TfiI GAWTC 2 cut(s) 42, 163
Tru1I TTAA 3 cut(s) 114, 212, 351
Tru9I TTAA 3 cut(s) 114, 212, 351
TscAI CASTG 2 cut(s) 127, 250
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 263
TspRI CASTG 2 cut(s) 127, 250
VpaK11BI GGWCC 1 cut(s) 240
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 412
ZrmI AGTACT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.