Rw5G045390

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004039
Physical Location & Seq
Reverse (-)
79317341 .. 79318182
842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045390.1

Sequence Viewer

Length: 405 bp
ATGACTGTTCTTTTAAGTTTCGGCGAAGGGTCGAGCAAAAGGTCCAGTGGTGGCAATCCTGACCAGATATTGTTTCATGGGATTATTCCTGTGTTGGTTGCTTCTGTGCTTTCGGGTTTGGCATCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTGTGCATGTTGGTGAGTACTGCTAAGTCTCCCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGACTTGGGTAATGATCATATTGAAATTTCATGTTTCCCTCTATTTTTTGTATATTAGCTTGATTCCTGTGGAGTTTAATTTGTTGGCATACTCAGAACCACCACAATCATTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

134

Amino Acids

14.68

Weight (kDa)

7.81

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 19 - 105 9.4e-08 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 2 cut(s) 170, 223
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 2 cut(s) 248, 345
AluI AGCT 2 cut(s) 248, 345
Alw26I GTCTC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 42
BccI CCATC 2 cut(s) 233, 270
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 180
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 122, 281
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 392
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 7, 181
BstDEI CTNAG 2 cut(s) 228, 379
BstF5I GGATG 2 cut(s) 122, 281
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 122, 281
BtsIMutI CAGTG 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 169, 222
CspCI CAANNNNNGTGG 1 cut(s) 378
CviAII CATG 4 cut(s) 77, 211, 260, 317
CviJI RGCY 3 cut(s) 143, 248, 345
CviKI_1 RGCY 3 cut(s) 143, 248, 345
CviQI GTAC 2 cut(s) 169, 222
DdeI CTNAG 2 cut(s) 228, 379
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 80, 214, 263, 320
FaiI YATR 8 cut(s) 78, 212, 261, 273, 305, 318, 339, 376
FatI CATG 4 cut(s) 76, 210, 259, 316
FbaI TGATCA 1 cut(s) 300
FokI GGATG 2 cut(s) 109, 288
Hin1II CATG 4 cut(s) 80, 214, 263, 320
HinfI GANTC 2 cut(s) 280, 349
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 254, 382
Hpy188III TCNNGA 2 cut(s) 59, 236
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 7, 181
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 2 cut(s) 228, 379
Hsp92II CATG 4 cut(s) 80, 214, 263, 320
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 1 cut(s) 300
LpnPI CCDG 7 cut(s) 58, 72, 77, 102, 134, 161, 366
LweI GCATC 1 cut(s) 131
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MluCI AATT 2 cut(s) 311, 364
MlyI GAGTC 1 cut(s) 274
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 2 cut(s) 136, 335
MseI TTAA 3 cut(s) 14, 153, 363
MslI CAYNNNNRTG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
NdeII GATC 1 cut(s) 300
NlaIII CATG 4 cut(s) 80, 214, 263, 320
NspI RCATGY 1 cut(s) 214
PfeI GAWTC 1 cut(s) 349
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 2 cut(s) 170, 223
RsaNI GTAC 2 cut(s) 169, 222
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 3 cut(s) 14, 153, 363
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 1 cut(s) 42
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 149
SetI ASST 4 cut(s) 44, 153, 250, 347
SfaNI GCATC 1 cut(s) 131
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 2 cut(s) 311, 364
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 7, 181
TaqI TCGA 1 cut(s) 32
TasI AATT 2 cut(s) 311, 364
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 3 cut(s) 14, 153, 363
Tru9I TTAA 3 cut(s) 14, 153, 363
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 65, 305
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.