pycom15g28600

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004039
Physical Location & Seq
Reverse (-)
24649960 .. 24652891
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g28600.3

Sequence Viewer

Length: 987 bp
ATGGCGGCCGCCAAGAAAAAAATTCCGGCGCCGCCGAACTCTGAGCAAATGAACTCAAGGGTCTGGCTCTTTTCCCTCCTACTCACACTCCAATACGGAGTTCAGCCCCTCATCTCGAAACGCTTCACCAGTAGGGAAGTGATCGTAACGTCGTCGGTTCTGACGTGCGAGATATCCAAGGTTATCTGTGCCCTAATTTTCATGGCCAGAGACGGCAGCTTGAAGAAGGTGTACAGAGAGTGGACTTTGGTTGGTGCGTTGACCGCCTCGGGGCTCCCTGCCGCCATTTACGCATTGCAGAATAGTTTGCTGCAGATTTCTTACAAGAACCTTGATTCCCTCACCTTCTCAATGCTCAACCAGACTAAAATCATTTTCACTGCCCTCTTTACGTATTTGATTTTGAGGCAGAAGCAATCAATTCAACAGATTGGGGCGCTCTTCTTGTTGATTATGGCCGCTGTCCTTTTAAGTTTTGGGGAAGGCTCCAAAAAAGGGACTAGTAGCGGCAGTTCTGACCAGATATTGTTTAGTGGGATTATTCCCGTTTTGGTGGCCTCTGTGCTATCAGGTTTGGCGTCCTCTTTGTGTCAATGGGCTTCCCAGGTTAAGAAACACTCATCGTATTTGATGACCGTAGAGATGTCTATTGTGGGAAGTTTATGCTTGTTGGTTAGTACCTCTAAGTCTCCAGATGGAGAAGCTATCAGAAAACATGGCTATTTTTATGGATGGACTTTGACAACTTGGATCCCAGTTATGTCCAATGCCCTTGGTGGAATTCTTGTTGGCCTAGTCACAAGTTATGCTGGCGGCGTTAAGAAGGGGTTTGTTATTGTTTCTGCCCTTCTTGTTACCGCTATGCTGCAGTTCATTTTTGAAGGGAAACCACCTTCACTGTATTGTCTCCTGGCGCTTCCTCTCGTGGTCAGCAGCATTTCGATATACCAGAAGTATCCATACCGTGTTAAAAAGAAAGAAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

329

Amino Acids

35.69

Weight (kDa)

9.74

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AciI CCGC 9 cut(s) 5, 9, 32, 264, 282, 459, 507, 813, 858
AclWI GGATC 2 cut(s) 745, 758
AcoI YGGCCR 3 cut(s) 6, 204, 456
AcsI RAATTY 2 cut(s) 21, 780
AcyI GRCGYC 2 cut(s) 29, 578
AfaI GTAC 2 cut(s) 233, 679
AfiI CCNNNNNNNGG 2 cut(s) 270, 495
AgsI TTSAA 3 cut(s) 223, 425, 881
AhlI ACTAGT 1 cut(s) 500
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 2 cut(s) 603, 909
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 219, 704
AluI AGCT 2 cut(s) 219, 704
Alw26I GTCTC 3 cut(s) 204, 693, 911
AlwI GGATC 2 cut(s) 745, 758
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 5 cut(s) 6, 204, 456, 555, 790
ApeKI GCWGC 4 cut(s) 216, 310, 865, 933
ApoI RAATTY 2 cut(s) 21, 780
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 3 cut(s) 31, 439, 916
AsuHPI GGTGA 2 cut(s) 118, 334
AvaI CYCGRG 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 206
BamHI GGATCC 1 cut(s) 750
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 276
BarI GAAGNNNNNNTAC 4 cut(s) 215, 247, 944, 976
BauI CACGAG 1 cut(s) 923
BbvI GCAGC 4 cut(s) 228, 297, 852, 945
BccI CCATC 2 cut(s) 689, 726
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 2 cut(s) 605, 911
BciVI GTATCC 1 cut(s) 966
BcoDI GTCTC 3 cut(s) 204, 693, 911
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 2 cut(s) 501, 794
BfmI CTRYAG 2 cut(s) 311, 866
BfoI RGCGCY 3 cut(s) 32, 440, 917
BfuI GTATCC 1 cut(s) 966
Bme1390I CCNGG 2 cut(s) 605, 911
BmeT110I CYCGRG 1 cut(s) 268
BmgBI CACGTC 1 cut(s) 165
BmiI GGNNCC 4 cut(s) 30, 275, 487, 752
BmrFI CCNGG 2 cut(s) 605, 911
BmrI ACTGGG 1 cut(s) 749
BmuI ACTGGG 1 cut(s) 749
BpmI CTGGAG 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 393
BsaHI GRCGYC 2 cut(s) 29, 578
BsaJI CCNNGG 4 cut(s) 177, 267, 603, 772
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 495
Bse1I ACTGG 2 cut(s) 129, 755
Bse3DI GCAATG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 605, 911
BseDI CCNNGG 4 cut(s) 177, 267, 603, 772
BseGI GGATG 1 cut(s) 737
BseLI CCNNNNNNNGG 2 cut(s) 270, 495
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 129, 755
BseSI GKGCMC 1 cut(s) 193
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 4 cut(s) 228, 297, 852, 945
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 5 cut(s) 8, 206, 458, 557, 792
BshNI GGYRCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 2 cut(s) 270, 495
BsmAI GTCTC 3 cut(s) 204, 693, 911
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 511
BsnI GGCC 5 cut(s) 8, 206, 458, 557, 792
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 2 cut(s) 193, 276
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 2 cut(s) 141, 750
BspACI CCGC 9 cut(s) 5, 9, 32, 264, 282, 459, 507, 813, 858
BspANI GGCC 5 cut(s) 8, 206, 458, 557, 792
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 4 cut(s) 30, 275, 487, 752
BspMAI CTGCAG 2 cut(s) 315, 870
BspPI GGATC 2 cut(s) 745, 758
BspQI GCTCTTC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 2 cut(s) 129, 755
BssECI CCNNGG 4 cut(s) 177, 267, 603, 772
BssMI GATC 2 cut(s) 141, 750
BssNI GRCGYC 2 cut(s) 29, 578
BssSI CACGAG 1 cut(s) 923
BssT1I CCWWGG 2 cut(s) 177, 772
Bst2BI CACGAG 1 cut(s) 923
Bst2UI CCWGG 2 cut(s) 605, 911
Bst4CI ACNGT 3 cut(s) 637, 900, 965
Bst6I CTCTTC 1 cut(s) 446
BstACI GRCGYC 2 cut(s) 29, 578
BstAUI TGTACA 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 811
BstDEI CTNAG 2 cut(s) 42, 684
BstF5I GGATG 1 cut(s) 737
BstH2I RGCGCY 3 cut(s) 32, 440, 917
BstHHI GCGC 3 cut(s) 31, 439, 916
BstKTI GATC 2 cut(s) 144, 753
BstMAI GTCTC 3 cut(s) 204, 693, 911
BstMBI GATC 2 cut(s) 141, 750
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 263, 290
BstNI CCWGG 2 cut(s) 605, 911
BstSCI CCNGG 2 cut(s) 603, 909
BstSFI CTRYAG 2 cut(s) 311, 866
BstSLI GKGCMC 1 cut(s) 193
BstSNI TACGTA 1 cut(s) 393
BstV1I GCAGC 4 cut(s) 228, 297, 852, 945
BstX2I RGATCY 1 cut(s) 750
BstYI RGATCY 1 cut(s) 750
BstZI CGGCCG 1 cut(s) 6
BsuI GTATCC 1 cut(s) 966
BsuRI GGCC 5 cut(s) 8, 206, 458, 557, 792
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 737
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 378, 896
Cac8I GCNNGC 1 cut(s) 811
CciNI GCGGCCGC 1 cut(s) 6
CfoI GCGC 3 cut(s) 31, 439, 916
CseI GACGC 1 cut(s) 567
Csp6I GTAC 2 cut(s) 232, 678
CviAII CATG 2 cut(s) 202, 716
CviQI GTAC 2 cut(s) 232, 678
DdeI CTNAG 2 cut(s) 42, 684
DinI GGCGCC 1 cut(s) 30
DpnI GATC 2 cut(s) 143, 752
DpnII GATC 2 cut(s) 141, 750
EaeI YGGCCR 3 cut(s) 6, 204, 456
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
EclXI CGGCCG 1 cut(s) 6
Eco105I TACGTA 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 177, 772
Eco24I GRGCYC 1 cut(s) 276
Eco32I GATATC 1 cut(s) 174
Eco52I CGGCCG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 603, 909
EcoRV GATATC 1 cut(s) 174
EcoT14I CCWWGG 2 cut(s) 177, 772
EcoT38I GRGCYC 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 177, 772
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 2 cut(s) 205, 719
FaqI GGGAC 1 cut(s) 511
FatI CATG 2 cut(s) 201, 715
FokI GGATG 1 cut(s) 744
FriOI GRGCYC 1 cut(s) 276
FspBI CTAG 2 cut(s) 501, 794
GlaI GCGC 3 cut(s) 30, 438, 915
GsuI CTGGAG 1 cut(s) 675
HaeII RGCGCY 3 cut(s) 32, 440, 917
HaeIII GGCC 5 cut(s) 8, 206, 458, 557, 792
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 567
HhaI GCGC 3 cut(s) 31, 439, 916
Hin1I GRCGYC 2 cut(s) 29, 578
Hin1II CATG 2 cut(s) 205, 719
Hin6I GCGC 3 cut(s) 29, 437, 914
HinP1I GCGC 3 cut(s) 29, 437, 914
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 1 cut(s) 335
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 118, 334
Hpy166II GTNNAC 3 cut(s) 232, 243, 261
Hpy188I TCNGA 4 cut(s) 43, 162, 517, 710
Hpy188III TCNNGA 2 cut(s) 115, 692
Hpy8I GTNNAC 3 cut(s) 232, 243, 261
Hpy99I CGWCG 2 cut(s) 154, 157
HpyAV CCTTC 7 cut(s) 220, 355, 476, 817, 857, 875, 903
HpyCH4III ACNGT 3 cut(s) 637, 900, 965
HpyCH4IV ACGT 3 cut(s) 149, 164, 392
HpyCH4V TGCA 3 cut(s) 298, 313, 868
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 290
HpyF3I CTNAG 2 cut(s) 42, 684
HpySE526I ACGT 3 cut(s) 149, 164, 392
Hsp92I GRCGYC 2 cut(s) 29, 578
Hsp92II CATG 2 cut(s) 205, 719
HspAI GCGC 3 cut(s) 29, 437, 914
KasI GGCGCC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 141, 750
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 2 cut(s) 279, 491
Lsp1109I GCAGC 4 cut(s) 228, 297, 852, 945
MaeI CTAG 2 cut(s) 501, 794
MaeII ACGT 3 cut(s) 149, 164, 392
MaeIII GTNAC 3 cut(s) 145, 796, 853
MalI GATC 2 cut(s) 143, 752
MboI GATC 2 cut(s) 141, 750
MboII GAAGA 2 cut(s) 235, 433
MflI RGATCY 1 cut(s) 750
MhlI GDGCHC 2 cut(s) 193, 276
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 4 cut(s) 21, 195, 420, 780
MluNI TGGCCA 1 cut(s) 206
Mly113I GGCGCC 1 cut(s) 29
Mox20I TGGCCA 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 122
MscI TGGCCA 1 cut(s) 206
MseI TTAA 4 cut(s) 470, 609, 819, 969
Msp20I TGGCCA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 605, 911
MvaI CCWGG 2 cut(s) 605, 911
MwoI GCNNNNNNNGC 2 cut(s) 263, 290
NarI GGCGCC 1 cut(s) 29
NdeII GATC 2 cut(s) 141, 750
NlaIII CATG 2 cut(s) 205, 719
NlaIV GGNNCC 4 cut(s) 30, 275, 487, 752
NmuCI GTSAC 1 cut(s) 796
NotI GCGGCCGC 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 446
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 335
PluTI GGCGCC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 393
Psp6I CCWGG 2 cut(s) 603, 909
PspGI CCWGG 2 cut(s) 603, 909
PspN4I GGNNCC 4 cut(s) 30, 275, 487, 752
PsrI GAACNNNNNNTAC 2 cut(s) 496, 528
PstI CTGCAG 2 cut(s) 315, 870
PsuI RGATCY 1 cut(s) 750
RsaI GTAC 2 cut(s) 233, 679
RsaNI GTAC 2 cut(s) 232, 678
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 4 cut(s) 470, 609, 819, 969
Sau3AI GATC 2 cut(s) 141, 750
ScrFI CCNGG 2 cut(s) 605, 911
SduI GDGCHC 2 cut(s) 193, 276
SfcI CTRYAG 2 cut(s) 311, 866
SfoI GGCGCC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SnaBI TACGTA 1 cut(s) 393
SpeI ACTAGT 1 cut(s) 500
Sse9I AATT 4 cut(s) 21, 195, 420, 780
SsiI CCGC 9 cut(s) 5, 9, 32, 264, 282, 459, 507, 813, 858
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 2 cut(s) 501, 794
StyD4I CCNGG 2 cut(s) 603, 909
StyI CCWWGG 2 cut(s) 177, 772
TaaI ACNGT 3 cut(s) 637, 900, 965
TaiI ACGT 3 cut(s) 152, 167, 395
TaqI TCGA 2 cut(s) 116, 941
TasI AATT 4 cut(s) 21, 195, 420, 780
TatI WGTACW 1 cut(s) 231
TauI GCSGC 7 cut(s) 8, 11, 34, 284, 461, 510, 816
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 4 cut(s) 470, 609, 819, 969
Tru9I TTAA 4 cut(s) 470, 609, 819, 969
TscAI CASTG 2 cut(s) 385, 903
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 4 cut(s) 216, 310, 865, 933
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 3 cut(s) 65, 190, 862
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 385, 903
XapI RAATTY 2 cut(s) 21, 780
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 2 cut(s) 501, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.