Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030804.1

Orthogroup ID

OG0004039

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 516

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030804.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgctcaaccagactaagatcattttcactgctatctgtacttatttgatattgaggcagaagcaatcgattcaacaagtcggggcgcttttcttgttgattattgcagctgttcttttaagtttcggggaagggtcgagcaaaaggtctagtggtggcaatgccgaccaaatattgtttcatgggattattcctgtgttggttgcttctgtgctttcgggtttggcgtcctctctgtgtcaatgggcttcccaggttaagaagcactcgtcgtacttgatgactgtagagatgtctattgttggaagtttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

104

Amino Acids

11.14

Weight (kDa)

9.45

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65000 AT5G65000
fragaria_vesca	FvH4_1g20890 FvH4_1g20890 FvH4_1g20890
malus_domestica	MD01G1029800.v1.1 MD15G1324100.v1.1
prunus_persica	Prupe.6G187000_v2.0.a1
pyrus_communis	pycom15g28600
rosa_chinensis	RchiOBHm_Chr2g0113501 RchiOBHm_Chr3g0453281 RchiOBHm_Chr3g0467111
rosa_laevigata	RLG00000012260 RLG00000018070
rosa_multiflora	Rmu_sc0000929.1_g000049 Rmu_sc0007415.1_g000022 Rmu_sc0030804.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129190 Rroxscaffold_2G00129960
rosa_rugosa	Rorug02G0187900
rosa_samantha	Rh2AG242500 Rh2AG626300 Rh2BG256400 Rh2CG246700 Rh2DG250500 Rh2DG682500 Rh3AG133600 Rh3BG154800 Rh7DG391800
rosa_wichuraiana	Rw2G018960 Rw2G040960 Rw5G045390 Rw7G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	2 cut(s)	40, 275
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	252
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	254
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	89
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	18
BspDI	ATCGAT	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	18
BssNI	GRCGYC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	68
BsuTUI	ATCGAT	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	68
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	39, 274
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	2 cut(s)	110, 248
CviKI_1	RGCY	2 cut(s)	110, 248
CviQI	GTAC	2 cut(s)	39, 274
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	185
FaiI	YATR	1 cut(s)	183
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	89
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	185
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	4 cut(s)	23, 207, 239, 266
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	150
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	2 cut(s)	48, 241
MseI	TTAA	2 cut(s)	119, 258
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	40, 275
RsaNI	GTAC	2 cut(s)	39, 274
SaqAI	TTAA	2 cut(s)	119, 258
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	3 cut(s)	112, 149, 258
SfcI	CTRYAG	1 cut(s)	285
SspI	AATATT	1 cut(s)	174
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	68, 137
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	119, 258
Tru9I	TTAA	2 cut(s)	119, 258
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	34
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.