Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004039

Physical Location & Seq

Genomic Coordinates Forward (+)

16845300 .. 16846255

Gene Structure 956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCGGAAGAGTCAGCACCACTACGACGTCGTCCAACTATAGCTTTTTCCTCGAAGACCCCTCGTTCTGGAAAGATCACAACGTCCAGAAGTGAAGATGAAGATGCTGACAAGAAAACAAAGACAAAGACAGTAAAGGAAACAAGTAGTCAATGGGAGCTTCTAAATGATGTTAAAGCAATATGGTTGCGTAATCCAAAGGAGGTGACCGAACAAGAGTACACCAAATTCTATCAGCCCCTTGCCAAGGATTTTAGTGAGGACAAGCCCTTGTCATGGAGCCTTTTCTTGTTGATTATTGCAGCTGTTCTTCTAAGTTTCGAGGAAGGGTTGAGCAAAAGGTCTAGTGTACGTGGTGGCAATTCTGACCAGATATTGTTTAATGGGATTATTCCTGTGTTGGTTGCGTCTTTGCTTTCGGGTTTACAGTCCTTTCTGTGTCAATGGGCTTCCCAGGGATGTCTATCGTTGGAAGTTTGTGCTTGTTGGTTAGCACCGCTAAGTCTCTCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002790 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0009266 GO:0009306 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009888 GO:0009934 GO:0009987 GO:0010035 GO:0010038 GO:0010073 GO:0010075 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022603 GO:0030054 GO:0031090 GO:0031974 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033554 GO:0034976 GO:0040008 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046903 GO:0048046 GO:0048507 GO:0048509 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

187

Amino Acids

20.84

Weight (kDa)

5.37

Isoelectric Point (pI)

57.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	30 - 96	6.2e-18	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65000 AT5G65000
fragaria_vesca	FvH4_1g20890 FvH4_1g20890 FvH4_1g20890
malus_domestica	MD01G1029800.v1.1 MD15G1324100.v1.1
prunus_persica	Prupe.6G187000_v2.0.a1
pyrus_communis	pycom15g28600
rosa_chinensis	RchiOBHm_Chr2g0113501 RchiOBHm_Chr3g0453281 RchiOBHm_Chr3g0467111
rosa_laevigata	RLG00000012260 RLG00000018070
rosa_multiflora	Rmu_sc0000929.1_g000049 Rmu_sc0007415.1_g000022 Rmu_sc0030804.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129190 Rroxscaffold_2G00129960
rosa_rugosa	Rorug02G0187900
rosa_samantha	Rh2AG242500 Rh2AG626300 Rh2BG256400 Rh2CG246700 Rh2DG250500 Rh2DG682500 Rh3AG133600 Rh3BG154800 Rh7DG391800
rosa_wichuraiana	Rw2G018960 Rw2G040960 Rw5G045390 Rw7G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	31
AciI	CCGC	2 cut(s)	5, 497
AcsI	RAATTY	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	2 cut(s)	221, 351
AfiI	CCNNNNNNNGG	3 cut(s)	68, 247, 276
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	4 cut(s)	44, 160, 305, 520
AluI	AGCT	4 cut(s)	44, 160, 305, 520
Alw26I	GTCTC	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	2 cut(s)	505, 542
BciT130I	CCWGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	463
BsaHI	GRCGYC	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	246, 453, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 247, 276
Bse8I	GATNNNNATC	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	3 cut(s)	246, 453, 454
BseGI	GGATG	2 cut(s)	464, 553
BseJI	GATNNNNATC	1 cut(s)	463
BseLI	CCNNNNNNNGG	3 cut(s)	68, 247, 276
BseXI	GCAGC	1 cut(s)	314
BslI	CCNNNNNNNGG	3 cut(s)	68, 247, 276
BsmAI	GTCTC	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	2 cut(s)	5, 497
BspLI	GGNNCC	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	246, 453, 454
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	28
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	133, 429
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	314, 500
BstEII	GGTNACC	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	464, 553
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	464, 553
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	220, 350
CviAII	CATG	2 cut(s)	276, 532
CviJI	RGCY	8 cut(s)	44, 160, 238, 268, 282, 305, 449, 520
CviKI_1	RGCY	8 cut(s)	44, 160, 238, 268, 282, 305, 449, 520
CviQI	GTAC	2 cut(s)	220, 350
DdeI	CTNAG	2 cut(s)	314, 500
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	246
Eco91I	GGTNACC	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	279, 535
FaiI	YATR	5 cut(s)	41, 184, 277, 533, 545
FatI	CATG	2 cut(s)	275, 531
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	471
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	303
HgaI	GACGC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	279, 535
HinfI	GANTC	2 cut(s)	11, 552
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	222, 350, 425
Hpy188I	TCNGA	2 cut(s)	367, 526
Hpy188III	TCNNGA	3 cut(s)	69, 87, 508
Hpy8I	GTNNAC	3 cut(s)	222, 350, 425
Hpy99I	CGWCG	2 cut(s)	30, 33
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	133, 429
HpyCH4IV	ACGT	3 cut(s)	28, 83, 352
HpyCH4V	TGCA	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	314, 500
HpySE526I	ACGT	3 cut(s)	28, 83, 352
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	279, 535
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	157, 279
LpnPI	CCDG	6 cut(s)	54, 100, 383, 408, 440, 467
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	3 cut(s)	28, 83, 352
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	5 cut(s)	20, 67, 107, 113, 302
MluCI	AATT	2 cut(s)	227, 361
MlyI	GAGTC	2 cut(s)	20, 546
MmeI	TCCRAC	2 cut(s)	59, 450
MnlI	CCTC	5 cut(s)	61, 72, 196, 253, 316
MseI	TTAA	2 cut(s)	174, 381
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	279, 535
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	205
PasI	CCCWGGG	1 cut(s)	454
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	2 cut(s)	19, 546
PpsI	GAGTC	2 cut(s)	19, 546
Ppu21I	YACGTR	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	453
PspEI	GGTNACC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	281
PsyI	GACNNNGTC	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	221, 351
RsaNI	GTAC	2 cut(s)	220, 350
SaqAI	TTAA	2 cut(s)	174, 381
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	20, 546
ScrFI	CCNGG	1 cut(s)	455
SetI	ASST	9 cut(s)	31, 46, 86, 162, 207, 307, 344, 355, 522
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	227, 361
SsiI	CCGC	2 cut(s)	5, 497
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	133, 429
TaiI	ACGT	3 cut(s)	31, 86, 355
TaqI	TCGA	3 cut(s)	53, 321, 509
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	2 cut(s)	227, 361
TatI	WGTACW	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	174, 381
Tru9I	TTAA	2 cut(s)	174, 381
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	114
Tth111I	GACNNNGTC	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	227
XspI	CTAG	1 cut(s)	345
ZraI	GACGTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.