Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004039

Physical Location & Seq

Genomic Coordinates Forward (+)

19552855 .. 19556036

Gene Structure 3182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G187000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGGCCACCAAGCACAAAGCTCCAGTGCGGAGCTCGGAGAAAATGAACTCAAGGGTTTGGCTCTTTTCTCTTCTACTCACTCTGCAATACGGAGCTCAGCCCCTGATCTCCAAACGCTGCACCAGAAGAGAAGTGATTGTAACGTCGTCTGTTCTGACATGCGAGATAGCCAAGGTTGTATGTGCCCTAATTTTCATGGCAAGAGACGGTAGCTTGAAGAAAGTGTACAAAGAGTGGACTTTGGTTGGTGCCTTAACTGCTTCGGGCCTTCCCGCTGCCATTTATGCACTGCAAAATAGTTTGCTTCAGATTTCTTACAAGAACCTTGATTCACTTACCTTCTCAATGCTCAACCAGACTAAAATTATTTTTACTGCTCTCTTTACATATTTGATACTGAGGCAGAAGCAATCAATCCAACAAATTGGGGCTCTCTTCTTGTTGATTCTGGCAGCCATTCTTTTAAGTTTTGGGGAAGGCTCCAAAAAAGGGTCTAGTGCTAGCAATTCTGACCAAATATTGTTTAATGGGATTATTCCCGTCATGGTTGCCTCTGTACTCTCAGGTTTGGCATCCACTTTGTGTCAATGGGCATCCCAGGTTAAGAAACACTCATCATACTTGATGACTGTAGAGATGTCTATTGTGGGAAGTTTATGCTTGTTGGCTAGTACCTTTAAGTCTCCAGATGGAGAAGCTATTGCAAAGCATGGCCTTTTTTATGGATGGACTCTAATGACTTGGATCCCAGTCATGTCCAATGCCCTTGGTGGAATTCTTGTTGGTCTAGTCACAAGCTATGCCGGCGGTGTTAAAAAGGGGTTCGTCATTGTTTCTGCACTTCTTGTTACGGCTTTGTTGCAGTTCATTTTTGAAGGGAAACCACCTTCATTGTATTGTCTCGTAGCTCTTCCTCTTGTGGTTAGCAGCATTTCGATATACCAGAAGTATCCATACCGAGTTAAAAGGAAAGAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

328

Amino Acids

35.64

Weight (kDa)

9.76

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65000 AT5G65000
fragaria_vesca	FvH4_1g20890 FvH4_1g20890 FvH4_1g20890
malus_domestica	MD01G1029800.v1.1 MD15G1324100.v1.1
prunus_persica	Prupe.6G187000_v2.0.a1
pyrus_communis	pycom15g28600
rosa_chinensis	RchiOBHm_Chr2g0113501 RchiOBHm_Chr3g0453281 RchiOBHm_Chr3g0467111
rosa_laevigata	RLG00000012260 RLG00000018070
rosa_multiflora	Rmu_sc0000929.1_g000049 Rmu_sc0007415.1_g000022 Rmu_sc0030804.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129190 Rroxscaffold_2G00129960
rosa_rugosa	Rorug02G0187900
rosa_samantha	Rh2AG242500 Rh2AG626300 Rh2BG256400 Rh2CG246700 Rh2DG250500 Rh2DG682500 Rh3AG133600 Rh3BG154800 Rh7DG391800
rosa_wichuraiana	Rw2G018960 Rw2G040960 Rw5G045390 Rw7G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	4 cut(s)	5, 31, 276, 810
AclWI	GGATC	2 cut(s)	742, 755
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	777
AcuI	CTGAAG	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	585
AfaI	GTAC	3 cut(s)	230, 561, 676
AfiI	CCNNNNNNNGG	1 cut(s)	492
AgsI	TTSAA	2 cut(s)	220, 878
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	7 cut(s)	23, 36, 98, 216, 701, 801, 911
AluI	AGCT	7 cut(s)	23, 36, 98, 216, 701, 801, 911
Alw21I	GWGCWC	2 cut(s)	38, 100
Alw26I	GTCTC	3 cut(s)	201, 690, 908
AlwI	GGATC	2 cut(s)	742, 755
AlwNI	CAGNNNCTG	1 cut(s)	106
AoxI	GGCC	3 cut(s)	6, 268, 715
ApeKI	GCWGC	4 cut(s)	120, 278, 455, 930
ApoI	RAATTY	1 cut(s)	777
AspS9I	GGNCC	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	3 cut(s)	38, 100, 436
BarI	GAAGNNNNNNTAC	4 cut(s)	212, 244, 941, 973
Bbv12I	GWGCWC	2 cut(s)	38, 100
BbvI	GCAGC	4 cut(s)	107, 265, 467, 942
BccI	CCATC	2 cut(s)	686, 723
BceAI	ACGGC	1 cut(s)	870
BciT130I	CCWGG	1 cut(s)	602
BciVI	GTATCC	1 cut(s)	963
BcoDI	GTCTC	3 cut(s)	201, 690, 908
BfaI	CTAG	4 cut(s)	498, 504, 672, 791
BfmI	CTRYAG	1 cut(s)	633
BfuI	GTATCC	1 cut(s)	963
BisI	GCNGC	5 cut(s)	6, 121, 279, 456, 931
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	5 cut(s)	7, 122, 280, 457, 932
Bme1390I	CCNGG	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	3 cut(s)	253, 484, 749
BmrFI	CCNGG	1 cut(s)	602
BmrI	ACTGGG	1 cut(s)	746
BmsI	GCATC	2 cut(s)	584, 605
BmtI	GCTAGC	1 cut(s)	507
BmuI	ACTGGG	1 cut(s)	746
BpmI	CTGGAG	2 cut(s)	9, 672
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	174, 600, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse118I	RCCGGY	1 cut(s)	806
Bse1I	ACTGG	2 cut(s)	26, 752
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	3 cut(s)	174, 600, 769
BseGI	GGATG	3 cut(s)	575, 596, 734
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMII	CTCAG	3 cut(s)	113, 392, 579
BseNI	ACTGG	2 cut(s)	26, 752
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	4 cut(s)	107, 265, 467, 942
BsgI	GTGCAG	2 cut(s)	106, 825
BshFI	GGCC	3 cut(s)	8, 270, 717
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	2 cut(s)	38, 100
BsiSI	CCGG	1 cut(s)	807
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	3 cut(s)	201, 690, 908
BsmBI	CGTCTC	1 cut(s)	201
BsnI	GGCC	3 cut(s)	8, 270, 717
Bsp1286I	GDGCHC	4 cut(s)	38, 100, 190, 436
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	108, 747
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	4 cut(s)	5, 31, 276, 810
BspANI	GGCC	3 cut(s)	8, 270, 717
BspCNI	CTCAG	3 cut(s)	112, 393, 578
BspLI	GGNNCC	3 cut(s)	253, 484, 749
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	2 cut(s)	742, 755
BspQI	GCTCTTC	1 cut(s)	918
BspT107I	GGYRCC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	806
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	26, 752
BssAI	RCCGGY	1 cut(s)	806
BssECI	CCNNGG	3 cut(s)	174, 600, 769
BssMI	GATC	2 cut(s)	108, 747
BssT1I	CCWWGG	2 cut(s)	174, 769
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	3 cut(s)	212, 634, 981
Bst6I	CTCTTC	4 cut(s)	78, 124, 443, 918
BstAUI	TGTACA	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	505, 808
BstDEI	CTNAG	3 cut(s)	99, 401, 565
BstF5I	GGATG	3 cut(s)	575, 596, 734
BstKTI	GATC	2 cut(s)	111, 750
BstMAI	GTCTC	3 cut(s)	201, 690, 908
BstMBI	GATC	2 cut(s)	108, 747
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 287, 807
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	600
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	4 cut(s)	107, 265, 467, 942
BstX2I	RGATCY	1 cut(s)	747
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	963
BsuRI	GGCC	3 cut(s)	8, 270, 717
BtsCI	GGATG	3 cut(s)	575, 596, 734
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	33, 290
Cac8I	GCNNGC	2 cut(s)	505, 808
CaiI	CAGNNNCTG	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	806
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	229, 560, 675
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	5 cut(s)	162, 199, 547, 713, 757
CviQI	GTAC	3 cut(s)	229, 560, 675
DdeI	CTNAG	3 cut(s)	99, 401, 565
DpnI	GATC	2 cut(s)	110, 749
DpnII	GATC	2 cut(s)	108, 747
DraIII	CACNNNGTG	1 cut(s)	585
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	4 cut(s)	78, 124, 443, 918
EarI	CTCTTC	4 cut(s)	78, 124, 443, 918
Ecl136II	GAGCTC	2 cut(s)	36, 98
Eco130I	CCWWGG	2 cut(s)	174, 769
Eco24I	GRGCYC	3 cut(s)	38, 100, 436
Eco53kI	GAGCTC	2 cut(s)	36, 98
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	2 cut(s)	36, 98
EcoRI	GAATTC	1 cut(s)	777
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	2 cut(s)	174, 769
EcoT38I	GRGCYC	3 cut(s)	38, 100, 436
ErhI	CCWWGG	2 cut(s)	174, 769
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	5 cut(s)	165, 202, 550, 716, 760
FatI	CATG	5 cut(s)	161, 198, 546, 712, 756
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	5 cut(s)	6, 121, 279, 456, 931
FokI	GGATG	3 cut(s)	562, 583, 741
FriOI	GRGCYC	3 cut(s)	38, 100, 436
Fsp4HI	GCNGC	5 cut(s)	6, 121, 279, 456, 931
FspBI	CTAG	4 cut(s)	498, 504, 672, 791
GluI	GCNGC	5 cut(s)	6, 121, 279, 456, 931
GsuI	CTGGAG	2 cut(s)	9, 672
HaeIII	GGCC	3 cut(s)	8, 270, 717
HapII	CCGG	1 cut(s)	807
Hin1II	CATG	5 cut(s)	165, 202, 550, 716, 760
HinfI	GANTC	3 cut(s)	332, 448, 733
HpaII	CCGG	1 cut(s)	807
Hpy166II	GTNNAC	2 cut(s)	229, 240
Hpy188I	TCNGA	4 cut(s)	40, 159, 312, 514
Hpy188III	TCNNGA	1 cut(s)	689
Hpy8I	GTNNAC	2 cut(s)	229, 240
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	5 cut(s)	281, 352, 473, 872, 900
HpyCH4III	ACNGT	3 cut(s)	212, 634, 981
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	7 cut(s)	88, 123, 290, 295, 707, 842, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 287, 807
HpyF3I	CTNAG	3 cut(s)	99, 401, 565
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	5 cut(s)	165, 202, 550, 716, 760
KroI	GCCGGC	1 cut(s)	806
KroNI	GCCGGC	1 cut(s)	808
Kzo9I	GATC	2 cut(s)	108, 747
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	4 cut(s)	28, 33, 95, 488
Lsp1109I	GCAGC	4 cut(s)	107, 265, 467, 942
LweI	GCATC	2 cut(s)	584, 605
MaeI	CTAG	4 cut(s)	498, 504, 672, 791
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	3 cut(s)	142, 793, 850
MalI	GATC	2 cut(s)	110, 749
MboI	GATC	2 cut(s)	108, 747
MboII	GAAGA	5 cut(s)	65, 141, 232, 430, 905
MflI	RGATCY	1 cut(s)	747
MhlI	GDGCHC	4 cut(s)	38, 100, 190, 436
MluCI	AATT	5 cut(s)	192, 366, 426, 508, 777
MlyI	GAGTC	1 cut(s)	727
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	3 cut(s)	396, 565, 927
MroNI	GCCGGC	1 cut(s)	806
MseI	TTAA	7 cut(s)	257, 467, 528, 606, 681, 816, 966
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	3 cut(s)	260, 287, 807
NaeI	GCCGGC	1 cut(s)	808
NdeII	GATC	2 cut(s)	108, 747
NgoMIV	GCCGGC	1 cut(s)	806
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	5 cut(s)	165, 202, 550, 716, 760
NlaIV	GGNNCC	3 cut(s)	253, 484, 749
NmuCI	GTSAC	1 cut(s)	793
NspI	RCATGY	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	918
PdiI	GCCGGC	1 cut(s)	808
PfeI	GAWTC	2 cut(s)	332, 448
PkrI	GCNGC	5 cut(s)	7, 122, 280, 457, 932
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
Psp124BI	GAGCTC	2 cut(s)	38, 100
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	3 cut(s)	253, 484, 749
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	747
RsaI	GTAC	3 cut(s)	230, 561, 676
RsaNI	GTAC	3 cut(s)	229, 560, 675
SacI	GAGCTC	2 cut(s)	38, 100
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	7 cut(s)	257, 467, 528, 606, 681, 816, 966
SatI	GCNGC	5 cut(s)	6, 121, 279, 456, 931
Sau3AI	GATC	2 cut(s)	108, 747
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	4 cut(s)	38, 100, 190, 436
SfaNI	GCATC	2 cut(s)	584, 605
SfcI	CTRYAG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	5 cut(s)	192, 366, 426, 508, 777
SsiI	CCGC	4 cut(s)	5, 31, 276, 810
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	4 cut(s)	498, 504, 672, 791
SstI	GAGCTC	2 cut(s)	38, 100
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	2 cut(s)	174, 769
TaaI	ACNGT	3 cut(s)	212, 634, 981
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	938
TasI	AATT	5 cut(s)	192, 366, 426, 508, 777
TatI	WGTACW	2 cut(s)	228, 559
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	332, 448
Tru1I	TTAA	7 cut(s)	257, 467, 528, 606, 681, 816, 966
Tru9I	TTAA	7 cut(s)	257, 467, 528, 606, 681, 816, 966
TscAI	CASTG	2 cut(s)	33, 297
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	4 cut(s)	120, 278, 455, 930
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	4 cut(s)	62, 187, 859, 882
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	2 cut(s)	33, 297
XapI	RAATTY	1 cut(s)	777
XceI	RCATGY	1 cut(s)	165
XspI	CTAG	4 cut(s)	498, 504, 672, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.