RchiOBHm_Chr3g0453281

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004039
Physical Location & Seq
Reverse (-)
3740315 .. 3741431
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42038

Sequence Viewer

Length: 465 bp
ATGGGAGTTACTGGGCAGAAGCAATCGATTCAACAAGTCGGGGCGCTTTTCTTGTTGATTATTGCAGCTGTTCTTTTAAGTTTCGGCGAAGGGTCGAGCAAAAGGTCCAGTGGTGGCAATCCTGACCAGATATTGTTTCATGGGATTATTCCTGTGTTGGTTGCTTCTGTGCTTTCGGGTTTGGCATCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTGTGCGTGTTGGTGAGTACTGCTAAGTCTCCCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGACTTGGGCAAGGAAACCACCTTCATTGTATTGTCTGGCATCTCTTCCCCTCGTGGTTAGCAGCATTTCGATATACCAGAAATATCCTTACCAAGTTAAAAAGAAAGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

154

Amino Acids

16.57

Weight (kDa)

9.57

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 5 - 120 8.6e-08 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 233, 286
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 68, 311
AluI AGCT 2 cut(s) 68, 311
Alw26I GTCTC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 65, 411
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 292
AvaII GGWCC 1 cut(s) 105
BauI CACGAG 1 cut(s) 401
BbvI GCAGC 2 cut(s) 77, 423
BccI CCATC 2 cut(s) 296, 333
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 2 cut(s) 66, 412
BlsI GCNGC 2 cut(s) 67, 413
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 194, 398
BmuI ACTGGG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 16, 108
BseBI CCWGG 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 185, 344
BseNI ACTGG 2 cut(s) 16, 108
BseXI GCAGC 2 cut(s) 77, 423
BshVI ATCGAT 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 300
BspDI ATCGAT 1 cut(s) 26
BsrI ACTGG 2 cut(s) 16, 108
BssECI CCNNGG 1 cut(s) 210
BssSI CACGAG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 185, 344
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 77, 423
Bsu15I ATCGAT 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 26
BtsCI GGATG 2 cut(s) 185, 344
BtsIMutI CAGTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 105
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 2 cut(s) 232, 285
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 2 cut(s) 140, 323
CviJI RGCY 3 cut(s) 68, 206, 311
CviKI_1 RGCY 3 cut(s) 68, 206, 311
CviQI GTAC 2 cut(s) 232, 285
DdeI CTNAG 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 143, 326
FaiI YATR 4 cut(s) 141, 324, 336, 424
FatI CATG 2 cut(s) 139, 322
Fnu4HI GCNGC 2 cut(s) 66, 412
FokI GGATG 2 cut(s) 172, 351
Fsp4HI GCNGC 2 cut(s) 66, 412
GlaI GCGC 1 cut(s) 45
GluI GCNGC 2 cut(s) 66, 412
HaeII RGCGCY 1 cut(s) 47
HhaI GCGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 143, 326
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 3 cut(s) 28, 343, 458
HphI GGTGA 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 122, 299
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 83, 381
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 2 cut(s) 143, 326
HspAI GCGC 1 cut(s) 44
LpnPI CCDG 8 cut(s) 121, 135, 140, 165, 197, 224, 371, 440
Lsp1109I GCAGC 2 cut(s) 77, 423
LweI GCATC 2 cut(s) 194, 398
MaeIII GTNAC 1 cut(s) 7
MboII GAAGA 1 cut(s) 386
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 2 cut(s) 199, 410
MseI TTAA 4 cut(s) 77, 216, 447, 463
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
NlaIII CATG 2 cut(s) 143, 326
PfeI GAWTC 2 cut(s) 28, 458
PkrI GCNGC 2 cut(s) 67, 413
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspPI GGNCC 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 2 cut(s) 233, 286
RsaNI GTAC 2 cut(s) 232, 285
SaqAI TTAA 4 cut(s) 77, 216, 447, 463
SatI GCNGC 2 cut(s) 66, 412
Sau96I GGNCC 1 cut(s) 105
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 212
SetI ASST 5 cut(s) 70, 107, 216, 313, 373
SfaNI GCATC 2 cut(s) 194, 398
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 3 cut(s) 26, 95, 419
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 2 cut(s) 28, 458
Tru1I TTAA 4 cut(s) 77, 216, 447, 463
Tru9I TTAA 4 cut(s) 77, 216, 447, 463
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 65, 411
TspDTI ATGAA 2 cut(s) 128, 363
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.