Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004039

Physical Location & Seq

Genomic Coordinates Forward (+)

85063462 .. 85064163

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG626300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCCCGCCTCCGTCCGCACCTTCAAGGAGCACGTCTACTGCGTTTACTCCACCTCAGGCGACTAGGACGACGACTGCCGAACAGTCAGCACCACTACGACGTCGTCCAACTAGAGCTTTTCCACGAAGACCGCTCGTTCTGGAAAGATCACAACGTCCAGAGAAGTAAAGATGAAGATGCTGAGAAGAAAACAAAGACAAAGACAGTAAAGGAAACAAGTAGTCAATGGGAGCTTCTAAATGATGAGGACAAGCCTTTGTTGCGTAATCCAAAGGAGGTGACCGAAGAAGAGTACACCAAATTCTATCAGACCCTTGCCAAGGATTTCAGTGAGGATAAGCCTTTGTCAAAGAGCCACTTTACCGCTGAAGTTGATGTAGAATTCAACGCTGTCCTGTTTGTTCCTCTTACGGCTACTCATGATCTATATGAAATTGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002790 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0009266 GO:0009306 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009888 GO:0009934 GO:0009987 GO:0010035 GO:0010038 GO:0010073 GO:0010075 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022603 GO:0030054 GO:0031090 GO:0031974 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033554 GO:0034976 GO:0040008 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046903 GO:0048046 GO:0048507 GO:0048509 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

148

Amino Acids

17.59

Weight (kDa)

6.45

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	49 - 145	4.5e-24	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65000 AT5G65000
fragaria_vesca	FvH4_1g20890 FvH4_1g20890 FvH4_1g20890
malus_domestica	MD01G1029800.v1.1 MD15G1324100.v1.1
prunus_persica	Prupe.6G187000_v2.0.a1
pyrus_communis	pycom15g28600
rosa_chinensis	RchiOBHm_Chr2g0113501 RchiOBHm_Chr3g0453281 RchiOBHm_Chr3g0467111
rosa_laevigata	RLG00000012260 RLG00000018070
rosa_multiflora	Rmu_sc0000929.1_g000049 Rmu_sc0007415.1_g000022 Rmu_sc0030804.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129190 Rroxscaffold_2G00129960
rosa_rugosa	Rorug02G0187900
rosa_samantha	Rh2AG242500 Rh2AG626300 Rh2BG256400 Rh2CG246700 Rh2DG250500 Rh2DG682500 Rh3AG133600 Rh3BG154800 Rh7DG391800
rosa_wichuraiana	Rw2G018960 Rw2G040960 Rw5G045390 Rw7G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	37
AciI	CCGC	4 cut(s)	7, 17, 133, 366
AcsI	RAATTY	2 cut(s)	302, 383
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	26, 388
AjiI	CACGTC	1 cut(s)	35
AluBI	AGCT	2 cut(s)	118, 235
AluI	AGCT	2 cut(s)	118, 235
Alw21I	GWGCWC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	302, 383
AsuHPI	GGTGA	1 cut(s)	292
AxyI	CCTNAGG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	429
BfaI	CTAG	2 cut(s)	65, 113
BmgBI	CACGTC	1 cut(s)	35
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse21I	CCTNAGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	70, 174
BsiHKAI	GWGCWC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	148, 424
BspACI	CCGC	4 cut(s)	7, 17, 133, 366
BspCNI	CTCAG	2 cut(s)	69, 175
BspHI	TCATGA	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	148, 424
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	86, 208
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	56, 183
BstEII	GGTNACC	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstKTI	GATC	2 cut(s)	151, 427
BstMBI	GATC	2 cut(s)	148, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstPI	GGTNACC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	135
Bsu36I	CCTNAGG	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	337
CciI	TCATGA	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	6 cut(s)	118, 235, 256, 343, 357, 416
CviKI_1	RGCY	6 cut(s)	118, 235, 256, 343, 357, 416
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	2 cut(s)	56, 183
DpnI	GATC	2 cut(s)	150, 426
DpnII	GATC	2 cut(s)	148, 424
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	1 cut(s)	425
FaiI	YATR	4 cut(s)	423, 430, 432, 445
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	1 cut(s)	421
FauI	CCCGC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	37
FspBI	CTAG	2 cut(s)	65, 113
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	3 cut(s)	38, 47, 297
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	3 cut(s)	142, 160, 422
Hpy8I	GTNNAC	3 cut(s)	38, 47, 297
Hpy99I	CGWCG	3 cut(s)	75, 104, 107
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	86, 208
HpyCH4IV	ACGT	3 cut(s)	34, 102, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	56, 183
HpySE526I	ACGT	3 cut(s)	34, 102, 156
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	425
Kzo9I	GATC	2 cut(s)	148, 424
LmnI	GCTCC	2 cut(s)	29, 232
LpnPI	CCDG	4 cut(s)	43, 127, 173, 410
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	65, 113
MaeII	ACGT	3 cut(s)	34, 102, 156
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	150, 426
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	2 cut(s)	148, 424
MboII	GAAGA	5 cut(s)	140, 188, 199, 299, 302
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	3 cut(s)	302, 383, 435
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	20, 65, 241, 271, 328, 417
MspA1I	CMGCKG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	148, 424
NlaIII	CATG	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	280
PagI	TCATGA	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PflFI	GACNNNGTC	1 cut(s)	104
PspEI	GGTNACC	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
Sau3AI	GATC	2 cut(s)	148, 424
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	8 cut(s)	24, 37, 57, 105, 120, 159, 237, 282
SfaNI	GCATC	1 cut(s)	169
Sse9I	AATT	3 cut(s)	302, 383, 435
SsiI	CCGC	4 cut(s)	7, 17, 133, 366
SspMI	CTAG	2 cut(s)	65, 113
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	86, 208
TaiI	ACGT	3 cut(s)	37, 105, 159
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	3 cut(s)	302, 383, 435
TatI	WGTACW	1 cut(s)	294
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	189, 447
TspRI	CASTG	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	104
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	2 cut(s)	302, 383
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	2 cut(s)	65, 113
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.