Rh2DG682500

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004039
Physical Location & Seq
Reverse (-)
90133054 .. 90135608
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG682500.1

Sequence Viewer

Length: 582 bp
ATGAAGGAGTTGGGCCTTAACTATGAGCAGAAGCAATCGATTCAACAAGTCGGGGCACTTTTCTTGTTGATTATTGCAGCTGTTCTTTTAAGTTTCGGCGAAGGGTCGAGCAAAAGGTCCAGTGGTGGCAATCCTGACCAGATATTGTTTCATGGGATTATTCCTGTGTTGGTTGCTTCTGTGCTTTCGGGTTTAGCATCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTGTGCATGTTGGTGAGTACTGCTAAGTCTCCCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGACTTGGGTTGCACTAGGACTGGGTTCATTTTTGAAGGGAAACCACCTTCATTGTATTGTCTGGCATCTCTTCCCCTCGTGTTGTAATCACGAACGTGATTGGCCTAATTTGGGGTTCTATTACGACGGAATGGATTCAAGTGGAGAATATGGTGTGCTTGCTGAGTGTTTCCAGCTAAAAACTGAGCTAACGATTGGTATTCTACAGATTAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

193

Amino Acids

21.16

Weight (kDa)

6.36

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 10 - 126 7.1e-08 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 245, 298
AfiI CCNNNNNNNGG 1 cut(s) 473
AgsI TTSAA 3 cut(s) 44, 397, 501
AjnI CCWGG 1 cut(s) 222
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 4 cut(s) 80, 323, 538, 550
AluI AGCT 4 cut(s) 80, 323, 538, 550
Alw26I GTCTC 1 cut(s) 312
AoxI GGCC 2 cut(s) 13, 464
ApeKI GCWGC 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 13, 117
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 58
BauI CACGAG 1 cut(s) 439
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 308, 345
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 2 cut(s) 255, 566
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmcAI AGTACT 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 13, 117
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 392
BmsI GCATC 2 cut(s) 206, 436
BmuI ACTGGG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 120, 387
BseBI CCWGG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 197, 356
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMII CTCAG 2 cut(s) 516, 537
BseNI ACTGG 2 cut(s) 120, 387
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 2 cut(s) 15, 466
BshVI ATCGAT 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 1 cut(s) 312
BsnI GGCC 2 cut(s) 15, 466
Bsp1286I GDGCHC 1 cut(s) 58
BspANI GGCC 2 cut(s) 15, 466
BspCNI CTCAG 2 cut(s) 517, 538
BspDI ATCGAT 1 cut(s) 38
BsrI ACTGG 2 cut(s) 120, 387
BssECI CCNNGG 1 cut(s) 222
BssSI CACGAG 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 3 cut(s) 303, 525, 546
BstF5I GGATG 2 cut(s) 197, 356
BstMAI GTCTC 1 cut(s) 312
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 2 cut(s) 255, 566
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 89
Bsu15I ATCGAT 1 cut(s) 38
BsuRI GGCC 2 cut(s) 15, 466
BsuTUI ATCGAT 1 cut(s) 38
BtsCI GGATG 2 cut(s) 197, 356
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 522
Cfr13I GGNCC 2 cut(s) 13, 117
ClaI ATCGAT 1 cut(s) 38
Csp6I GTAC 2 cut(s) 244, 297
CspCI CAANNNNNGTGG 2 cut(s) 395, 430
CviAII CATG 3 cut(s) 152, 286, 335
CviJI RGCY 7 cut(s) 15, 80, 218, 323, 466, 538, 550
CviKI_1 RGCY 7 cut(s) 15, 80, 218, 323, 466, 538, 550
CviQI GTAC 2 cut(s) 244, 297
DdeI CTNAG 3 cut(s) 303, 525, 546
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 222
FaeI CATG 3 cut(s) 155, 289, 338
FaiI YATR 6 cut(s) 24, 153, 287, 336, 348, 513
FatI CATG 3 cut(s) 151, 285, 334
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 2 cut(s) 184, 363
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 377
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 15, 466
Hin1II CATG 3 cut(s) 155, 289, 338
HinfI GANTC 3 cut(s) 40, 355, 497
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 3 cut(s) 134, 311, 452
Hpy99I CGWCG 2 cut(s) 244, 491
HpyAV CCTTC 3 cut(s) 95, 391, 419
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 3 cut(s) 77, 285, 374
HpyF3I CTNAG 3 cut(s) 303, 525, 546
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 3 cut(s) 155, 289, 338
LpnPI CCDG 9 cut(s) 133, 147, 152, 177, 209, 236, 368, 409, 548
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 206, 436
MaeI CTAG 1 cut(s) 377
MaeII ACGT 1 cut(s) 457
MboII GAAGA 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 1 cut(s) 469
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 2 cut(s) 211, 448
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 5 cut(s) 18, 89, 228, 573, 580
MslI CAYNNNNRTG 2 cut(s) 290, 456
MspA1I CMGCKG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
NlaIII CATG 3 cut(s) 155, 289, 338
NspI RCATGY 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 2 cut(s) 40, 497
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspPI GGNCC 2 cut(s) 13, 117
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 245, 298
RsaNI GTAC 2 cut(s) 244, 297
RseI CAYNNNNRTG 2 cut(s) 290, 456
SaqAI TTAA 5 cut(s) 18, 89, 228, 573, 580
SatI GCNGC 1 cut(s) 78
Sau96I GGNCC 2 cut(s) 13, 117
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 58
SetI ASST 8 cut(s) 82, 119, 228, 325, 411, 460, 540, 552
SfaNI GCATC 2 cut(s) 206, 436
SfcI CTRYAG 2 cut(s) 255, 566
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 2 cut(s) 290, 456
Sse9I AATT 1 cut(s) 469
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 460
TaqI TCGA 2 cut(s) 38, 107
TasI AATT 1 cut(s) 469
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 2 cut(s) 40, 497
Tru1I TTAA 5 cut(s) 18, 89, 228, 573, 580
Tru9I TTAA 5 cut(s) 18, 89, 228, 573, 580
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 17, 140, 378, 401
TspGWI ACGGA 1 cut(s) 504
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 117
XceI RCATGY 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.