Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004039

Physical Location & Seq

Genomic Coordinates Reverse (-)

66049021 .. 66058183

Gene Structure 9163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGACCGCCGCCAATCCAAAACGTCCGCCGCCGACCTCGGACCAAATGAACGCCAAGGTCTTCCTCTACTCCCTTCTTCTGGCTCTCCAATACGGCGCTCAGCCTCTCATCTCCAAGCGCTTCATCAGAAGAGAAGTGATCGTAACGTCGTCTGTTCTGACGTGTGAGGTAGCCAAGGTCATTTGTGCCCTAATTTTCATGGCCAGAGACGGGAGCTTGAAGAAGGTCTACAAAGAGTGGACTTTGGTTGGTGCGTTGACCGCTTCGGGGCTTCCCGCTGCTATTTATGCACTGCAGAATAGTTTGCTTCAGATTTCGTACAAGAATCTCGATTCTTTAACCTTCTCAATGCTTAACCAGACTAAGATCATTTTTACTGCTATCTGTACTTATTTGATATTGAGGCAGAAGCAATCGATTCAACAAGTTGGGGCGCTTTTCTTGTTGATTATTGCAGCTGTTCTTTTAAGTTTCGGGGAAGGGTCGAGCAAAAGGTCTAGTGGTGGCAATTCTGACCAGATATTGTTTCATGGGATTATTCCTGTGTTGGTTGCGTCTGTGCTTTCGGGTTTGGCGTCCTCTCTGTGTCAATGGGCTTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTGTGCATGTTGGTGAGTACCGCTAAATCTCCCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGACTTGGATCCCAGTCATGTCCAATGCCTTGGGTGGAATTCTTGTTGGCCTAGTCACAACCCATGCTGGCGGGAATGCCAAATGTATTGTAATGACTTCTCATCTCCAGGACTCTGCCATCCTTATCTTCGCATTCTCAATTGAAAACCCTGCATTTTACAACCAGGTAGCTTTTCCCTTGGTCATTTCTTCCAATTCCATATCCTCTTACTATATTGTTAGGTTGATGAGGAAATGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

328

Amino Acids

35.57

Weight (kDa)

9.56

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	22 - 158	1.3e-07	EamA-like transporter family
Nuc_sug_transp	PF04142	26 - 272	2.1e-29	Nucleotide-sugar transporter
PUNUT	PF16913	95 - 222	1.2e-10	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65000 AT5G65000
fragaria_vesca	FvH4_1g20890 FvH4_1g20890 FvH4_1g20890
malus_domestica	MD01G1029800.v1.1 MD15G1324100.v1.1
prunus_persica	Prupe.6G187000_v2.0.a1
pyrus_communis	pycom15g28600
rosa_chinensis	RchiOBHm_Chr2g0113501 RchiOBHm_Chr3g0453281 RchiOBHm_Chr3g0467111
rosa_laevigata	RLG00000012260 RLG00000018070
rosa_multiflora	Rmu_sc0000929.1_g000049 Rmu_sc0007415.1_g000022 Rmu_sc0030804.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129190 Rroxscaffold_2G00129960
rosa_rugosa	Rorug02G0187900
rosa_samantha	Rh2AG242500 Rh2AG626300 Rh2BG256400 Rh2CG246700 Rh2DG250500 Rh2DG682500 Rh3AG133600 Rh3BG154800 Rh7DG391800
rosa_wichuraiana	Rw2G018960 Rw2G040960 Rw5G045390 Rw7G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	8 cut(s)	9, 12, 29, 32, 264, 279, 681, 813
AclWI	GGATC	2 cut(s)	745, 758
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	780
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	578
AfaI	GTAC	4 cut(s)	323, 391, 626, 679
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	82, 213, 270
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	223, 425, 887
AjiI	CACGTC	1 cut(s)	165
AjnI	CCWGG	3 cut(s)	603, 849, 906
AluBI	AGCT	4 cut(s)	219, 461, 704, 914
AluI	AGCT	4 cut(s)	219, 461, 704, 914
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	745, 758
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	2 cut(s)	204, 790
ApeKI	GCWGC	2 cut(s)	281, 458
ApoI	RAATTY	1 cut(s)	780
AspLEI	GCGC	3 cut(s)	101, 123, 439
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	750
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	268, 470
BccI	CCATC	3 cut(s)	689, 726, 869
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	3 cut(s)	605, 851, 908
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	2 cut(s)	501, 794
BfmI	CTRYAG	2 cut(s)	296, 636
BfoI	RGCGCY	3 cut(s)	102, 124, 440
BisI	GCNGC	4 cut(s)	12, 32, 282, 459
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	4 cut(s)	13, 33, 283, 460
Bme1390I	CCNGG	3 cut(s)	605, 851, 908
Bme18I	GGWCC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	752
BmrFI	CCNGG	3 cut(s)	605, 851, 908
BmrI	ACTGGG	1 cut(s)	749
BmuI	ACTGGG	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	833
Bpu1102I	GCTNAGC	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	578
BsaJI	CCNNGG	6 cut(s)	39, 57, 177, 603, 771, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 213, 270
Bse1I	ACTGG	1 cut(s)	755
BseBI	CCWGG	3 cut(s)	605, 851, 908
BseCI	ATCGAT	1 cut(s)	419
BseDI	CCNNGG	6 cut(s)	39, 57, 177, 603, 771, 921
BseGI	GGATG	2 cut(s)	737, 861
BseLI	CCNNNNNNNGG	3 cut(s)	82, 213, 270
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	755
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	268, 470
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	206, 792
BshVI	ATCGAT	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	9
BslI	CCNNNNNNNGG	3 cut(s)	82, 213, 270
BsmAI	GTCTC	1 cut(s)	204
BsmBI	CGTCTC	1 cut(s)	204
BsmI	GAATGC	2 cut(s)	823, 875
BsnI	GGCC	2 cut(s)	206, 792
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	141, 369, 750
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	8 cut(s)	9, 12, 29, 32, 264, 279, 681, 813
BspANI	GGCC	2 cut(s)	206, 792
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	752
BspMAI	CTGCAG	1 cut(s)	300
BspPI	GGATC	2 cut(s)	745, 758
BsrI	ACTGG	1 cut(s)	755
BssECI	CCNNGG	6 cut(s)	39, 57, 177, 603, 771, 921
BssMI	GATC	3 cut(s)	141, 369, 750
BssNI	GRCGYC	1 cut(s)	578
BssT1I	CCWWGG	4 cut(s)	57, 177, 771, 921
Bst2UI	CCWGG	3 cut(s)	605, 851, 908
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	811
BstDEI	CTNAG	2 cut(s)	102, 366
BstF5I	GGATG	2 cut(s)	737, 861
BstH2I	RGCGCY	3 cut(s)	102, 124, 440
BstHHI	GCGC	3 cut(s)	101, 123, 439
BstKTI	GATC	3 cut(s)	144, 372, 753
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	3 cut(s)	141, 369, 750
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 263, 290
BstNI	CCWGG	3 cut(s)	605, 851, 908
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	3 cut(s)	603, 849, 906
BstSFI	CTRYAG	2 cut(s)	296, 636
BstSLI	GKGCMC	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	268, 470
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	750
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	750
Bsu15I	ATCGAT	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	206, 792
BsuTUI	ATCGAT	1 cut(s)	419
BtrI	CACGTC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	737, 861
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	811
CfoI	GCGC	3 cut(s)	101, 123, 439
Cfr13I	GGNCC	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	419
CseI	GACGC	2 cut(s)	546, 567
CsiI	ACCWGGT	1 cut(s)	906
Csp6I	GTAC	4 cut(s)	322, 390, 625, 678
CviAII	CATG	6 cut(s)	202, 533, 667, 716, 760, 806
CviQI	GTAC	4 cut(s)	322, 390, 625, 678
DdeI	CTNAG	2 cut(s)	102, 366
DpnI	GATC	3 cut(s)	143, 371, 752
DpnII	GATC	3 cut(s)	141, 369, 750
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	4 cut(s)	57, 177, 771, 921
Eco47I	GGWCC	1 cut(s)	43
Eco47III	AGCGCT	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	780
EcoRII	CCWGG	3 cut(s)	603, 849, 906
EcoT14I	CCWWGG	4 cut(s)	57, 177, 771, 921
ErhI	CCWWGG	4 cut(s)	57, 177, 771, 921
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	6 cut(s)	205, 536, 670, 719, 763, 809
FatI	CATG	6 cut(s)	201, 532, 666, 715, 759, 805
FauI	CCCGC	2 cut(s)	286, 806
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	12, 32, 282, 459
FokI	GGATG	2 cut(s)	744, 848
Fsp4HI	GCNGC	4 cut(s)	12, 32, 282, 459
FspBI	CTAG	2 cut(s)	501, 794
GlaI	GCGC	3 cut(s)	100, 122, 438
GluI	GCNGC	4 cut(s)	12, 32, 282, 459
GsuI	CTGGAG	1 cut(s)	833
HaeII	RGCGCY	3 cut(s)	102, 124, 440
HaeIII	GGCC	2 cut(s)	206, 792
HgaI	GACGC	2 cut(s)	546, 567
HhaI	GCGC	3 cut(s)	101, 123, 439
Hin1I	GRCGYC	1 cut(s)	578
Hin1II	CATG	6 cut(s)	205, 536, 670, 719, 763, 809
Hin6I	GCGC	3 cut(s)	99, 121, 437
HinP1I	GCGC	3 cut(s)	99, 121, 437
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	5 cut(s)	328, 335, 421, 736, 854
HphI	GGTGA	1 cut(s)	685
Hpy166II	GTNNAC	3 cut(s)	232, 243, 261
Hpy188I	TCNGA	6 cut(s)	43, 131, 162, 315, 517, 710
Hpy188III	TCNNGA	2 cut(s)	332, 692
Hpy8I	GTNNAC	3 cut(s)	232, 243, 261
Hpy99I	CGWCG	2 cut(s)	154, 625
HpyAV	CCTTC	4 cut(s)	86, 220, 355, 476
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	3 cut(s)	25, 149, 164
HpyCH4V	TGCA	6 cut(s)	293, 298, 458, 666, 896, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 263, 290
HpyF3I	CTNAG	2 cut(s)	102, 366
HpySE526I	ACGT	3 cut(s)	25, 149, 164
Hsp92I	GRCGYC	1 cut(s)	578
Hsp92II	CATG	6 cut(s)	205, 536, 670, 719, 763, 809
HspAI	GCGC	3 cut(s)	99, 121, 437
Kzo9I	GATC	3 cut(s)	141, 369, 750
LmnI	GCTCC	1 cut(s)	216
Lsp1109I	GCAGC	2 cut(s)	268, 470
MabI	ACCWGGT	1 cut(s)	906
MaeI	CTAG	2 cut(s)	501, 794
MaeII	ACGT	3 cut(s)	25, 149, 164
MaeIII	GTNAC	2 cut(s)	145, 796
MalI	GATC	3 cut(s)	143, 371, 752
MboI	GATC	3 cut(s)	141, 369, 750
MboII	GAAGA	6 cut(s)	55, 71, 144, 235, 862, 924
MfeI	CAATTG	1 cut(s)	882
MflI	RGATCY	1 cut(s)	750
MhlI	GDGCHC	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	5 cut(s)	195, 511, 780, 882, 937
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	730, 848
MmeI	TCCRAC	1 cut(s)	634
MnlI	CCTC	8 cut(s)	49, 77, 117, 163, 399, 592, 958, 966
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	4 cut(s)	341, 357, 470, 609
MslI	CAYNNNNRTG	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	2 cut(s)	281, 461
MspR9I	CCNGG	3 cut(s)	605, 851, 908
MunI	CAATTG	1 cut(s)	882
Mva1269I	GAATGC	2 cut(s)	823, 875
MvaI	CCWGG	3 cut(s)	605, 851, 908
MwoI	GCNNNNNNNGC	3 cut(s)	11, 263, 290
NdeII	GATC	3 cut(s)	141, 369, 750
NlaIII	CATG	6 cut(s)	205, 536, 670, 719, 763, 809
NlaIV	GGNNCC	1 cut(s)	752
NmuCI	GTSAC	1 cut(s)	796
NspI	RCATGY	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PctI	GAATGC	2 cut(s)	823, 875
PfeI	GAWTC	3 cut(s)	328, 335, 421
PfoI	TCCNGGA	1 cut(s)	849
PkrI	GCNGC	4 cut(s)	13, 33, 283, 460
PleI	GAGTC	2 cut(s)	730, 848
PpsI	GAGTC	2 cut(s)	730, 848
Psp6I	CCWGG	3 cut(s)	603, 849, 906
PspGI	CCWGG	3 cut(s)	603, 849, 906
PspN4I	GGNNCC	1 cut(s)	752
PspPI	GGNCC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	750
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	4 cut(s)	323, 391, 626, 679
RsaNI	GTAC	4 cut(s)	322, 390, 625, 678
RseI	CAYNNNNRTG	1 cut(s)	671
SaqAI	TTAA	4 cut(s)	341, 357, 470, 609
SatI	GCNGC	4 cut(s)	12, 32, 282, 459
Sau3AI	GATC	3 cut(s)	141, 369, 750
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	2 cut(s)	730, 848
ScrFI	CCNGG	3 cut(s)	605, 851, 908
SduI	GDGCHC	1 cut(s)	193
SexAI	ACCWGGT	1 cut(s)	906
SfcI	CTRYAG	2 cut(s)	296, 636
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	671
Sse9I	AATT	5 cut(s)	195, 511, 780, 882, 937
SsiI	CCGC	8 cut(s)	9, 12, 29, 32, 264, 279, 681, 813
SspMI	CTAG	2 cut(s)	501, 794
StyD4I	CCNGG	3 cut(s)	603, 849, 906
StyI	CCWWGG	4 cut(s)	57, 177, 771, 921
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	3 cut(s)	28, 152, 167
TaqI	TCGA	3 cut(s)	333, 419, 488
TasI	AATT	5 cut(s)	195, 511, 780, 882, 937
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	2 cut(s)	14, 34
TfiI	GAWTC	3 cut(s)	328, 335, 421
Tru1I	TTAA	4 cut(s)	341, 357, 470, 609
Tru9I	TTAA	4 cut(s)	341, 357, 470, 609
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	2 cut(s)	281, 458
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	4 cut(s)	65, 115, 190, 521
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	780
XceI	RCATGY	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	501, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.