FvH4_1g20890

CMP-sialic acid transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
13011395 .. 13014460
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20890.t2

Sequence Viewer

Length: 999 bp
ATGGCGACCGCGACCGCCGCCGCCGCCAAGCCGAAACGTCCGCCGCCGACCTCGGACCAAATGAACGCCAAGGTCTTCCTCTACTCCGTCCTTCTCGCTCTCCAATACGGAGCTCAGCCTCTCATCTCCAAACGCTTCATCAGAAGAGAAGTGATCGTCACGTCATCGGTGCTGACGTGTGAGGTGGCGAAGGTGATATGTGCCCTAGTTTTCATGGCCAGAGACGGGAGCTTGAAGAAGGTTTACAAAGAGTGGACTTTGCTTGGTGCGTTGACTGCTTCTGGGCTTCCGGCTGCCATTTATGCTCTGCAGAATAGCTTGCTTCAGATTTCGTATAAGAATCTTGATTCTTTGACGTTCTCAATGCTTAATCAGACTAAGATAATTTTTACTGCTATGTGTACGTATTTGATATTGAGGCAGAAGCAATCGATTCAGCAAGTCGGGGCGCTTTTCTTATTGATTATTGCAGCTGTTCTTCTAAGTTTCGGGGAAGGGTCGAGTAAGAGGTCTAGTGGTGGCAATTCGGATCAGATATGGTTTAATGGGATTATTCCGGTGTTGGTTGCGTCTGTGCTTTCGGGTTTGGCGTCCTCTCTGTGTCAGTGGGCTTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTCGGAAGTTTGTGCATGCTGGCTAGTACCGCTAAGTCTCCCGATGGAGAAGCTATCAGAAAGCATGGACTTTTCTATGGATGGACTATACTGACTTGGATCCCAGTCATGTCCAATGCCTTGGGTGGAATCCTTGTTGGCCTAGTCACAACCCATGCTGGTGGGGTTAGAAAGGGGTTTGTTATTGTTTCTGCACTTCTTGTTACGGCTTTGCTGCAGTTCATTTTTGAAGGGAAACCACCTTCATTGTATTGTCTGGCATCTCTTCCCCTCGTGGTTAGCAGCATTTCGATATACCAGAAATATCCTTACCGAGTTAAAAAGAAAGAATCGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

333

Amino Acids

35.91

Weight (kDa)

9.78

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 27 - 162 8.8e-07 EamA-like transporter family
Nuc_sug_transp PF04142 51 - 262 7.3e-24 Nucleotide-sugar transporter
PUNUT PF16913 99 - 226 1.3e-10 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AciI CCGC 8 cut(s) 9, 15, 18, 21, 24, 41, 44, 693
AclWI GGATC 3 cut(s) 537, 757, 770
AcoI YGGCCR 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 590
AfaI GTAC 3 cut(s) 403, 638, 691
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 2 cut(s) 235, 893
AjiI CACGTC 2 cut(s) 162, 177
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 5 cut(s) 113, 231, 318, 473, 716
AluI AGCT 5 cut(s) 113, 231, 318, 473, 716
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 216, 705
AlwI GGATC 3 cut(s) 537, 757, 770
AoxI GGCC 2 cut(s) 216, 802
ApeKI GCWGC 4 cut(s) 293, 470, 877, 945
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 205
BalI TGGCCA 1 cut(s) 218
BamHI GGATCC 1 cut(s) 762
BanII GRGCYC 1 cut(s) 115
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BauI CACGAG 1 cut(s) 935
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 4 cut(s) 280, 482, 864, 957
BccI CCATC 2 cut(s) 701, 738
BceAI ACGGC 1 cut(s) 885
BciT130I CCWGG 1 cut(s) 617
BcoDI GTCTC 2 cut(s) 216, 705
BfaI CTAG 4 cut(s) 206, 513, 687, 806
BfmI CTRYAG 3 cut(s) 308, 648, 878
BfoI RGCGCY 1 cut(s) 452
BisI GCNGC 8 cut(s) 18, 21, 24, 44, 294, 471, 878, 946
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 8 cut(s) 19, 22, 25, 45, 295, 472, 879, 947
Bme1390I CCNGG 1 cut(s) 617
Bme18I GGWCC 1 cut(s) 55
BmgBI CACGTC 2 cut(s) 162, 177
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 764
BmrFI CCNGG 1 cut(s) 617
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 1 cut(s) 932
BmuI ACTGGG 1 cut(s) 761
BpiI GAAGAC 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 431
BsaAI YACGTR 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 590
BsaJI CCNNGG 4 cut(s) 51, 69, 615, 783
BsaWI WCCGGW 1 cut(s) 556
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 767
BseBI CCWGG 1 cut(s) 617
BseCI ATCGAT 1 cut(s) 431
BseDI CCNNGG 4 cut(s) 51, 69, 615, 783
BseGI GGATG 1 cut(s) 749
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 767
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 4 cut(s) 280, 482, 864, 957
BsgI GTGCAG 1 cut(s) 840
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 2 cut(s) 9, 15
BshFI GGCC 2 cut(s) 218, 804
BshVI ATCGAT 1 cut(s) 431
BsiEI CGRYCG 2 cut(s) 9, 15
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 290, 557
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 216, 705
BsmBI CGTCTC 1 cut(s) 216
BsnI GGCC 2 cut(s) 218, 804
Bsp1286I GDGCHC 2 cut(s) 115, 205
Bsp143I GATC 3 cut(s) 153, 529, 762
Bsp1720I GCTNAGC 1 cut(s) 114
BspACI CCGC 8 cut(s) 9, 15, 18, 21, 24, 41, 44, 693
BspANI GGCC 2 cut(s) 218, 804
BspCNI CTCAG 1 cut(s) 127
BspDI ATCGAT 1 cut(s) 431
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 764
BspMAI CTGCAG 2 cut(s) 312, 882
BspPI GGATC 3 cut(s) 537, 757, 770
BsrI ACTGG 1 cut(s) 767
BssECI CCNNGG 4 cut(s) 51, 69, 615, 783
BssMI GATC 3 cut(s) 153, 529, 762
BssNI GRCGYC 1 cut(s) 590
BssSI CACGAG 1 cut(s) 935
BssT1I CCWWGG 2 cut(s) 69, 783
Bst2BI CACGAG 1 cut(s) 935
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 2 cut(s) 139, 933
BstACI GRCGYC 1 cut(s) 590
BstBAI YACGTR 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 320, 680, 684
BstDEI CTNAG 4 cut(s) 114, 378, 482, 696
BstF5I GGATG 1 cut(s) 749
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 156, 532, 765
BstMAI GTCTC 2 cut(s) 216, 705
BstMBI GATC 3 cut(s) 153, 529, 762
BstMCI CGRYCG 2 cut(s) 9, 15
BstMWI GCNNNNNNNGC 5 cut(s) 17, 23, 275, 302, 692
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 1 cut(s) 615
BstSFI CTRYAG 3 cut(s) 308, 648, 878
BstSLI GKGCMC 1 cut(s) 205
BstSNI TACGTA 1 cut(s) 405
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 4 cut(s) 280, 482, 864, 957
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 762
BstXI CCANNNNNNTGG 2 cut(s) 784, 824
BstYI RGATCY 1 cut(s) 762
Bsu15I ATCGAT 1 cut(s) 431
BsuRI GGCC 2 cut(s) 218, 804
BsuTUI ATCGAT 1 cut(s) 431
BtrI CACGTC 2 cut(s) 162, 177
BtsCI GGATG 1 cut(s) 749
BtsIMutI CAGTG 1 cut(s) 611
Cac8I GCNNGC 3 cut(s) 320, 680, 684
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 431
CseI GACGC 2 cut(s) 558, 579
Csp6I GTAC 3 cut(s) 402, 637, 690
CspCI CAANNNNNGTGG 2 cut(s) 891, 926
CviAII CATG 5 cut(s) 214, 679, 728, 772, 818
CviQI GTAC 3 cut(s) 402, 637, 690
DdeI CTNAG 4 cut(s) 114, 378, 482, 696
DpnI GATC 3 cut(s) 155, 531, 764
DpnII GATC 3 cut(s) 153, 529, 762
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 139, 933
EarI CTCTTC 2 cut(s) 139, 933
EciI GGCGGA 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 113
Eco105I TACGTA 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 69, 783
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 615
EcoT14I CCWWGG 2 cut(s) 69, 783
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 69, 783
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 5 cut(s) 217, 682, 731, 775, 821
FatI CATG 5 cut(s) 213, 678, 727, 771, 817
Fnu4HI GCNGC 8 cut(s) 18, 21, 24, 44, 294, 471, 878, 946
FokI GGATG 1 cut(s) 756
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 8 cut(s) 18, 21, 24, 44, 294, 471, 878, 946
FspBI CTAG 4 cut(s) 206, 513, 687, 806
GlaI GCGC 1 cut(s) 450
GluI GCNGC 8 cut(s) 18, 21, 24, 44, 294, 471, 878, 946
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 2 cut(s) 218, 804
HapII CCGG 2 cut(s) 290, 557
HgaI GACGC 2 cut(s) 558, 579
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 5 cut(s) 217, 682, 731, 775, 821
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 5 cut(s) 340, 347, 433, 792, 992
HpaII CCGG 2 cut(s) 290, 557
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 4 cut(s) 244, 255, 273, 402
Hpy188I TCNGA 8 cut(s) 55, 143, 327, 375, 529, 534, 668, 722
Hpy188III TCNNGA 2 cut(s) 344, 704
Hpy8I GTNNAC 4 cut(s) 244, 255, 273, 402
Hpy99I CGWCG 1 cut(s) 637
HpyAV CCTTC 6 cut(s) 101, 184, 232, 488, 887, 915
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4IV ACGT 5 cut(s) 37, 161, 176, 356, 404
HpyCH4V TGCA 5 cut(s) 310, 470, 678, 857, 880
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 23, 275, 302, 692
HpyF3I CTNAG 4 cut(s) 114, 378, 482, 696
HpySE526I ACGT 5 cut(s) 37, 161, 176, 356, 404
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 5 cut(s) 217, 682, 731, 775, 821
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 3 cut(s) 153, 529, 762
LmnI GCTCC 2 cut(s) 110, 228
Lsp1109I GCAGC 4 cut(s) 280, 482, 864, 957
LweI GCATC 1 cut(s) 932
MaeI CTAG 4 cut(s) 206, 513, 687, 806
MaeII ACGT 5 cut(s) 37, 161, 176, 356, 404
MaeIII GTNAC 3 cut(s) 157, 808, 865
MalI GATC 3 cut(s) 155, 531, 764
MboI GATC 3 cut(s) 153, 529, 762
MboII GAAGA 5 cut(s) 67, 156, 247, 470, 920
MflI RGATCY 1 cut(s) 762
MhlI GDGCHC 2 cut(s) 115, 205
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 2 cut(s) 384, 523
MluNI TGGCCA 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 646
MnlI CCTC 8 cut(s) 61, 89, 129, 175, 411, 501, 604, 944
Mox20I TGGCCA 1 cut(s) 218
MscI TGGCCA 1 cut(s) 218
MseI TTAA 4 cut(s) 369, 543, 621, 981
MslI CAYNNNNRTG 1 cut(s) 822
Msp20I TGGCCA 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 2 cut(s) 290, 557
MspR9I CCNGG 1 cut(s) 617
MvaI CCWGG 1 cut(s) 617
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 5 cut(s) 17, 23, 275, 302, 692
NdeII GATC 3 cut(s) 153, 529, 762
NlaIII CATG 5 cut(s) 217, 682, 731, 775, 821
NlaIV GGNNCC 1 cut(s) 764
NmuCI GTSAC 2 cut(s) 157, 808
NspI RCATGY 1 cut(s) 682
PaeI GCATGC 1 cut(s) 682
PcsI WCGNNNNNNNCGW 2 cut(s) 173, 587
PfeI GAWTC 5 cut(s) 340, 347, 433, 792, 992
PkrI GCNGC 8 cut(s) 19, 22, 25, 45, 295, 472, 879, 947
Ppu21I YACGTR 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 1 cut(s) 764
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 2 cut(s) 312, 882
PsuI RGATCY 1 cut(s) 762
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 3 cut(s) 403, 638, 691
RsaNI GTAC 3 cut(s) 402, 637, 690
RseI CAYNNNNRTG 1 cut(s) 822
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 4 cut(s) 369, 543, 621, 981
SatI GCNGC 8 cut(s) 18, 21, 24, 44, 294, 471, 878, 946
Sau3AI GATC 3 cut(s) 153, 529, 762
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 617
SduI GDGCHC 2 cut(s) 115, 205
SfaNI GCATC 1 cut(s) 932
SfcI CTRYAG 3 cut(s) 308, 648, 878
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 822
SnaBI TACGTA 1 cut(s) 405
SphI GCATGC 1 cut(s) 682
Sse9I AATT 2 cut(s) 384, 523
SsiI CCGC 8 cut(s) 9, 15, 18, 21, 24, 41, 44, 693
SspMI CTAG 4 cut(s) 206, 513, 687, 806
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 615
StyI CCWWGG 2 cut(s) 69, 783
TaaI ACNGT 1 cut(s) 649
TaiI ACGT 5 cut(s) 40, 164, 179, 359, 407
TaqI TCGA 3 cut(s) 431, 500, 953
TasI AATT 2 cut(s) 384, 523
TauI GCSGC 4 cut(s) 20, 23, 26, 46
TfiI GAWTC 5 cut(s) 340, 347, 433, 792, 992
Tru1I TTAA 4 cut(s) 369, 543, 621, 981
Tru9I TTAA 4 cut(s) 369, 543, 621, 981
TscAI CASTG 1 cut(s) 611
TseFI GTSAC 2 cut(s) 157, 808
TseI GCWGC 4 cut(s) 293, 470, 877, 945
Tsp45I GTSAC 2 cut(s) 157, 808
TspDTI ATGAA 5 cut(s) 77, 127, 202, 874, 897
TspGWI ACGGA 2 cut(s) 76, 123
TspRI CASTG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 55
XceI RCATGY 1 cut(s) 682
XspI CTAG 4 cut(s) 206, 513, 687, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.