MD15G1324100.v1.1

CMP-sialic acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
34493636 .. 34497154
3519 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1324100.v1.1.491

Sequence Viewer

Length: 984 bp
ATGGCGGCCGCCAAGAAAAAAACTCCGGCGCCGCCGAACTCTGAGCTAATGAACTCAAGGGTCTGGATCTTTTCCCTCCTACTCACACTCCAATACGGAGTTCAGCCCCTCATCTCGAAACGCTTCACCAGGGAAGTGATCGTAACGTCGTCGGTTCTGACGTGCGAGATAGCCAAGGTTATCTGTGCCCTAATTTTCATGGCCAGAGACGGTAGCTTGAAGAAGGTGTACAGAGAGTGGACTTTGGTTGGTGCGTTGACCGCCTCGGGGCTCCCTGCCGCCATATACGCATTGCAGAATAGTTTGCTGCAGATTTCTTACAAGAACCTTGATTCCCTCACCTTCTCAATGCTCAACCAGACTAAAATCATTTTCACTGCCCTCTTTACGTATTTGATTTTGAGGCAGAAGCAATCGATTCAACAGATTGGGGCGCTCGTCTTGTTGATTATGGCAGCTGTCCTTTTAAGTTTTGGGGAAGGCTCCAAAAAAGGGACTAGTAGCGGCAGTTCTGACCAGATATTGTTTAGTGGGATTATTCCCGTTTTGGTGGCCTCTGTGCTCTCAGGTTTGGCGTCCTCTTTGTGTCAATGGGCTTCCCAGGTTAAGAAACACTCATCGTATTTGATGACCATAGAGATGTCTATTGTGGGAAGTTTATGCTTGTTGGCTAGTACCTCTAAGTCTCCAGATGGAGAAGCTATCAGAAAACATGGCTATTTTTATGGATGGACTTTGACGACTTGGATCCCAGTTATGTCCAATGCCCTTGGTGGAATTCTTGTTGGCCTAGTCACAAGTTATGCTGGCGGCGTTAAAAAGGGGTTTGTTATTGTTTCTGCCCTTGTTGTTACCGCTATGCTGCAGTTCATTTTTGAAGGGAAACCACCTTCACTGTATTGTGTCCTGGCGCTTCCTCTCGTGGCCAGCAGCATTTCGATATACCAGAAGTATCCATACCGTGTTAAAAAGAAAGACGCGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

328

Amino Acids

35.43

Weight (kDa)

9.74

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 23 - 157 9.8e-06 EamA-like transporter family
Nuc_sug_transp PF04142 25 - 315 1.8e-33 Nucleotide-sugar transporter
PUNUT PF16913 94 - 220 3e-12 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccII CGCG 1 cut(s) 980
AciI CCGC 8 cut(s) 5, 9, 32, 261, 279, 504, 810, 855
AclWI GGATC 3 cut(s) 74, 742, 755
AcoI YGGCCR 3 cut(s) 6, 201, 924
AcsI RAATTY 1 cut(s) 777
AcyI GRCGYC 2 cut(s) 29, 575
AfaI GTAC 2 cut(s) 230, 676
AfiI CCNNNNNNNGG 2 cut(s) 267, 492
AflIII ACRYGT 1 cut(s) 978
AgsI TTSAA 3 cut(s) 220, 422, 878
AhlI ACTAGT 1 cut(s) 497
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 3 cut(s) 128, 600, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 4 cut(s) 46, 216, 458, 701
AluI AGCT 4 cut(s) 46, 216, 458, 701
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 2 cut(s) 201, 690
AlwI GGATC 3 cut(s) 74, 742, 755
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 5 cut(s) 6, 201, 552, 787, 924
ApeKI GCWGC 4 cut(s) 307, 455, 862, 930
ApoI RAATTY 1 cut(s) 777
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 3 cut(s) 31, 436, 913
AsuHPI GGTGA 2 cut(s) 118, 331
AvaI CYCGRG 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 190
BalI TGGCCA 2 cut(s) 203, 926
BamHI GGATCC 1 cut(s) 747
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 273
BarI GAAGNNNNNNTAC 4 cut(s) 212, 244, 941, 973
BauI CACGAG 1 cut(s) 920
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 4 cut(s) 294, 467, 849, 942
BccI CCATC 2 cut(s) 686, 723
BciT130I CCWGG 3 cut(s) 130, 602, 908
BciVI GTATCC 1 cut(s) 963
BcoDI GTCTC 2 cut(s) 201, 690
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 3 cut(s) 498, 672, 791
BfmI CTRYAG 2 cut(s) 308, 863
BfoI RGCGCY 3 cut(s) 32, 437, 914
BfuI GTATCC 1 cut(s) 963
Bme1390I CCNGG 3 cut(s) 130, 602, 908
BmeT110I CYCGRG 1 cut(s) 265
BmgBI CACGTC 1 cut(s) 162
BmiI GGNNCC 4 cut(s) 30, 272, 484, 749
BmrFI CCNGG 3 cut(s) 130, 602, 908
BmrI ACTGGG 1 cut(s) 746
BmuI ACTGGG 1 cut(s) 746
BpmI CTGGAG 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 40
Bsa29I ATCGAT 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 390
BsaHI GRCGYC 2 cut(s) 29, 575
BsaJI CCNNGG 5 cut(s) 129, 174, 264, 600, 769
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 492
Bse1I ACTGG 1 cut(s) 752
Bse3DI GCAATG 1 cut(s) 290
BseBI CCWGG 3 cut(s) 130, 602, 908
BseCI ATCGAT 1 cut(s) 416
BseDI CCNNGG 5 cut(s) 129, 174, 264, 600, 769
BseGI GGATG 1 cut(s) 734
BseLI CCNNNNNNNGG 2 cut(s) 267, 492
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 33, 579
BseNI ACTGG 1 cut(s) 752
BseSI GKGCMC 1 cut(s) 190
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 4 cut(s) 294, 467, 849, 942
Bsh1236I CGCG 1 cut(s) 980
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 5 cut(s) 8, 203, 554, 789, 926
BshNI GGYRCC 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 416
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 564
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 2 cut(s) 267, 492
BsmAI GTCTC 2 cut(s) 201, 690
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 5 cut(s) 8, 203, 554, 789, 926
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 190, 273, 564
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 3 cut(s) 66, 138, 747
BspACI CCGC 8 cut(s) 5, 9, 32, 261, 279, 504, 810, 855
BspANI GGCC 5 cut(s) 8, 203, 554, 789, 926
BspCNI CTCAG 2 cut(s) 34, 578
BspDI ATCGAT 1 cut(s) 416
BspFNI CGCG 1 cut(s) 980
BspLI GGNNCC 4 cut(s) 30, 272, 484, 749
BspMAI CTGCAG 2 cut(s) 312, 867
BspPI GGATC 3 cut(s) 74, 742, 755
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 1 cut(s) 752
BssECI CCNNGG 5 cut(s) 129, 174, 264, 600, 769
BssMI GATC 3 cut(s) 66, 138, 747
BssNI GRCGYC 2 cut(s) 29, 575
BssSI CACGAG 1 cut(s) 920
BssT1I CCWWGG 2 cut(s) 174, 769
Bst2BI CACGAG 1 cut(s) 920
Bst2UI CCWGG 3 cut(s) 130, 602, 908
Bst4CI ACNGT 3 cut(s) 212, 897, 962
BstACI GRCGYC 2 cut(s) 29, 575
BstAUI TGTACA 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 808, 928
BstDEI CTNAG 3 cut(s) 42, 565, 681
BstF5I GGATG 1 cut(s) 734
BstFNI CGCG 1 cut(s) 980
BstH2I RGCGCY 3 cut(s) 32, 437, 914
BstHHI GCGC 3 cut(s) 31, 436, 913
BstKTI GATC 3 cut(s) 69, 141, 750
BstMAI GTCTC 2 cut(s) 201, 690
BstMBI GATC 3 cut(s) 66, 138, 747
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 260, 287
BstNI CCWGG 3 cut(s) 130, 602, 908
BstSCI CCNGG 3 cut(s) 128, 600, 906
BstSFI CTRYAG 2 cut(s) 308, 863
BstSLI GKGCMC 1 cut(s) 190
BstSNI TACGTA 1 cut(s) 390
BstUI CGCG 1 cut(s) 980
BstV1I GCAGC 4 cut(s) 294, 467, 849, 942
BstX2I RGATCY 2 cut(s) 66, 747
BstYI RGATCY 2 cut(s) 66, 747
BstZI CGGCCG 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 416
BsuI GTATCC 1 cut(s) 963
BsuRI GGCC 5 cut(s) 8, 203, 554, 789, 926
BsuTUI ATCGAT 1 cut(s) 416
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 734
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 375, 893
Cac8I GCNNGC 2 cut(s) 808, 928
CciNI GCGGCCGC 1 cut(s) 6
CfoI GCGC 3 cut(s) 31, 436, 913
ClaI ATCGAT 1 cut(s) 416
CseI GACGC 1 cut(s) 564
Csp6I GTAC 2 cut(s) 229, 675
CviAII CATG 2 cut(s) 199, 713
CviQI GTAC 2 cut(s) 229, 675
DdeI CTNAG 3 cut(s) 42, 565, 681
DinI GGCGCC 1 cut(s) 30
DpnI GATC 3 cut(s) 68, 140, 749
DpnII GATC 3 cut(s) 66, 138, 747
EaeI YGGCCR 3 cut(s) 6, 201, 924
EagI CGGCCG 1 cut(s) 6
EclXI CGGCCG 1 cut(s) 6
Eco105I TACGTA 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 174, 769
Eco24I GRGCYC 1 cut(s) 273
Eco52I CGGCCG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 3 cut(s) 128, 600, 906
EcoT14I CCWWGG 2 cut(s) 174, 769
EcoT38I GRGCYC 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 174, 769
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 2 cut(s) 202, 716
FaqI GGGAC 1 cut(s) 508
FatI CATG 2 cut(s) 198, 712
FokI GGATG 1 cut(s) 741
FriOI GRGCYC 1 cut(s) 273
FspBI CTAG 3 cut(s) 498, 672, 791
GlaI GCGC 3 cut(s) 30, 435, 912
GsuI CTGGAG 1 cut(s) 672
HaeII RGCGCY 3 cut(s) 32, 437, 914
HaeIII GGCC 5 cut(s) 8, 203, 554, 789, 926
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 564
HhaI GCGC 3 cut(s) 31, 436, 913
Hin1I GRCGYC 2 cut(s) 29, 575
Hin1II CATG 2 cut(s) 202, 716
Hin6I GCGC 3 cut(s) 29, 434, 911
HinP1I GCGC 3 cut(s) 29, 434, 911
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 2 cut(s) 332, 418
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 118, 331
Hpy166II GTNNAC 3 cut(s) 229, 240, 258
Hpy188I TCNGA 4 cut(s) 43, 159, 514, 707
Hpy188III TCNNGA 3 cut(s) 64, 115, 689
Hpy8I GTNNAC 3 cut(s) 229, 240, 258
Hpy99I CGWCG 2 cut(s) 151, 154
HpyAV CCTTC 5 cut(s) 217, 352, 473, 872, 900
HpyCH4III ACNGT 3 cut(s) 212, 897, 962
HpyCH4IV ACGT 3 cut(s) 146, 161, 389
HpyCH4V TGCA 3 cut(s) 295, 310, 865
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 287
HpyF3I CTNAG 3 cut(s) 42, 565, 681
HpySE526I ACGT 3 cut(s) 146, 161, 389
Hsp92I GRCGYC 2 cut(s) 29, 575
Hsp92II CATG 2 cut(s) 202, 716
HspAI GCGC 3 cut(s) 29, 434, 911
KasI GGCGCC 1 cut(s) 28
Kzo9I GATC 3 cut(s) 66, 138, 747
LmnI GCTCC 2 cut(s) 276, 488
Lsp1109I GCAGC 4 cut(s) 294, 467, 849, 942
MaeI CTAG 3 cut(s) 498, 672, 791
MaeII ACGT 3 cut(s) 146, 161, 389
MaeIII GTNAC 3 cut(s) 142, 793, 850
MalI GATC 3 cut(s) 68, 140, 749
MboI GATC 3 cut(s) 66, 138, 747
MboII GAAGA 1 cut(s) 232
MflI RGATCY 2 cut(s) 66, 747
MhlI GDGCHC 3 cut(s) 190, 273, 564
MlsI TGGCCA 2 cut(s) 203, 926
MluCI AATT 2 cut(s) 192, 777
MluI ACGCGT 1 cut(s) 978
MluNI TGGCCA 2 cut(s) 203, 926
Mly113I GGCGCC 1 cut(s) 29
Mox20I TGGCCA 2 cut(s) 203, 926
MroXI GAANNNNTTC 1 cut(s) 122
MscI TGGCCA 2 cut(s) 203, 926
MseI TTAA 4 cut(s) 467, 606, 816, 966
MslI CAYNNNNRTG 1 cut(s) 638
Msp20I TGGCCA 2 cut(s) 203, 926
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 130, 602, 908
MvaI CCWGG 3 cut(s) 130, 602, 908
MvnI CGCG 1 cut(s) 980
MwoI GCNNNNNNNGC 2 cut(s) 260, 287
NarI GGCGCC 1 cut(s) 29
NdeII GATC 3 cut(s) 66, 138, 747
NlaIII CATG 2 cut(s) 202, 716
NlaIV GGNNCC 4 cut(s) 30, 272, 484, 749
NmuCI GTSAC 1 cut(s) 793
NotI GCGGCCGC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 332, 418
PluTI GGCGCC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 390
Psp6I CCWGG 3 cut(s) 128, 600, 906
PspGI CCWGG 3 cut(s) 128, 600, 906
PspN4I GGNNCC 4 cut(s) 30, 272, 484, 749
PsrI GAACNNNNNNTAC 2 cut(s) 493, 525
PstI CTGCAG 2 cut(s) 312, 867
PsuI RGATCY 2 cut(s) 66, 747
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 230, 676
RsaNI GTAC 2 cut(s) 229, 675
RseI CAYNNNNRTG 1 cut(s) 638
SaqAI TTAA 4 cut(s) 467, 606, 816, 966
Sau3AI GATC 3 cut(s) 66, 138, 747
ScrFI CCNGG 3 cut(s) 130, 602, 908
SduI GDGCHC 3 cut(s) 190, 273, 564
SfcI CTRYAG 2 cut(s) 308, 863
SfoI GGCGCC 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SnaBI TACGTA 1 cut(s) 390
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 2 cut(s) 192, 777
SsiI CCGC 8 cut(s) 5, 9, 32, 261, 279, 504, 810, 855
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 3 cut(s) 498, 672, 791
StyD4I CCNGG 3 cut(s) 128, 600, 906
StyI CCWWGG 2 cut(s) 174, 769
TaaI ACNGT 3 cut(s) 212, 897, 962
TaiI ACGT 3 cut(s) 149, 164, 392
TaqI TCGA 3 cut(s) 116, 416, 938
TasI AATT 2 cut(s) 192, 777
TatI WGTACW 1 cut(s) 228
TauI GCSGC 6 cut(s) 8, 11, 34, 281, 507, 813
TfiI GAWTC 2 cut(s) 332, 418
Tru1I TTAA 4 cut(s) 467, 606, 816, 966
Tru9I TTAA 4 cut(s) 467, 606, 816, 966
TscAI CASTG 2 cut(s) 382, 900
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 4 cut(s) 307, 455, 862, 930
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 3 cut(s) 65, 187, 859
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 382, 900
XapI RAATTY 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 3 cut(s) 498, 672, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.