RchiOBHm_Chr3g0467111

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004039
Physical Location & Seq
Forward (+)
13364229 .. 13366730
2502 bp
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UTR
Exon/CDS
Intron
PRQ43309

Sequence Viewer

Length: 438 bp
ATGGGAGTTACTGGGCAGAAGCAATCGATTCAACAAGTCGGGGCGCTTTTCTTGTTGATTATTGCAGCTGTTCTTTTAAGTTTCGGCGAAGGGTCGAGCAAAAGGTCCAGTGGTGGCAATCCTGACCAGATATTGTTTCATGGGATTATTCCTGTGTTGGTTGCTTCTGTGCTTTCGGGTTTGGCATCCTCTCTGTGTCAATGGGCCTCCCAGGTTAAGAAGCACTCGTCGTACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTGTGCGTGTTGGTGAGTACTGCTAAGTCTCCCGATGGAGAAGCTATCAGAAAACATGGACTTTTCTATGGATGGACTCTACTGACTTGGAAGTTTTATCTAACATGGTTGCATGGGTTTGTTATTGTTTCTGCGCTTCTTGTTACGGCTTTGCTGCAGTTCATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

145

Amino Acids

15.63

Weight (kDa)

9.3

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuc_sug_transp PF04142 5 - 135 3.5e-08 Nucleotide-sugar transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 233, 286
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 68, 311
AluI AGCT 2 cut(s) 68, 311
Alw26I GTCTC 1 cut(s) 300
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 65, 421
AspLEI GCGC 2 cut(s) 46, 403
AspS9I GGNCC 2 cut(s) 105, 204
AsuHPI GGTGA 1 cut(s) 292
AvaII GGWCC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 77, 408
BccI CCATC 2 cut(s) 296, 333
BceAI ACGGC 1 cut(s) 429
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 300
BfmI CTRYAG 2 cut(s) 243, 422
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 2 cut(s) 66, 422
BlsI GCNGC 2 cut(s) 67, 423
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 105, 204
BmrFI CCNGG 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 16, 108
BseBI CCWGG 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 185, 344
BseNI ACTGG 2 cut(s) 16, 108
BseXI GCAGC 2 cut(s) 77, 408
BshFI GGCC 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 300
BsnI GGCC 1 cut(s) 206
BspANI GGCC 1 cut(s) 206
BspDI ATCGAT 1 cut(s) 26
BspMAI CTGCAG 1 cut(s) 426
BsrI ACTGG 2 cut(s) 16, 108
BssECI CCNNGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 185, 344
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 403
BstMAI GTCTC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 243, 422
BstV1I GCAGC 2 cut(s) 77, 408
Bsu15I ATCGAT 1 cut(s) 26
BsuRI GGCC 1 cut(s) 206
BsuTUI ATCGAT 1 cut(s) 26
BtsCI GGATG 2 cut(s) 185, 344
BtsIMutI CAGTG 1 cut(s) 115
CfoI GCGC 2 cut(s) 46, 403
Cfr13I GGNCC 2 cut(s) 105, 204
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 2 cut(s) 232, 285
CviAII CATG 4 cut(s) 140, 323, 372, 380
CviJI RGCY 4 cut(s) 68, 206, 311, 416
CviKI_1 RGCY 4 cut(s) 68, 206, 311, 416
CviQI GTAC 2 cut(s) 232, 285
DdeI CTNAG 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 143, 326, 375, 383
FaiI YATR 5 cut(s) 141, 324, 336, 373, 381
FatI CATG 4 cut(s) 139, 322, 371, 379
Fnu4HI GCNGC 2 cut(s) 66, 422
FokI GGATG 2 cut(s) 172, 351
Fsp4HI GCNGC 2 cut(s) 66, 422
GlaI GCGC 2 cut(s) 45, 402
GluI GCNGC 2 cut(s) 66, 422
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 1 cut(s) 206
HhaI GCGC 2 cut(s) 46, 403
Hin1II CATG 4 cut(s) 143, 326, 375, 383
Hin6I GCGC 2 cut(s) 44, 401
HinP1I GCGC 2 cut(s) 44, 401
HinfI GANTC 2 cut(s) 28, 343
HphI GGTGA 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 122, 299
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 65, 379, 424
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 4 cut(s) 143, 326, 375, 383
HspAI GCGC 2 cut(s) 44, 401
LpnPI CCDG 6 cut(s) 121, 135, 140, 165, 197, 224
Lsp1109I GCAGC 2 cut(s) 77, 408
LweI GCATC 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 7, 409
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 2 cut(s) 199, 217
MseI TTAA 3 cut(s) 77, 216, 436
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
NlaIII CATG 4 cut(s) 143, 326, 375, 383
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 67, 423
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspPI GGNCC 2 cut(s) 105, 204
PstI CTGCAG 1 cut(s) 426
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 2 cut(s) 233, 286
RsaNI GTAC 2 cut(s) 232, 285
SaqAI TTAA 3 cut(s) 77, 216, 436
SatI GCNGC 2 cut(s) 66, 422
Sau96I GGNCC 2 cut(s) 105, 204
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 212
SetI ASST 4 cut(s) 70, 107, 216, 313
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 2 cut(s) 243, 422
SinI GGWCC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 26, 95
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 3 cut(s) 77, 216, 436
Tru9I TTAA 3 cut(s) 77, 216, 436
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 65, 421
TspDTI ATGAA 2 cut(s) 128, 418
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.