AT4G39955

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015316
Physical Location & Seq
Forward (+)
18530318 .. 18532296
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39955.1

Sequence Viewer

Length: 987 bp
ATGGCGAGTTGCTTCAGCTACGTGTCTTCTCGTAACAAATGTTACCAATACAGCTTCTCTCGTGCTGGTCTCCGATCATCTACCTCCGATCTTGGCGACGGCACCGTCTTCCACTGTTGGATCCCACTTACTCACATCCACACCAAGCCCACGCTCCTCCTCCTTCACGGGATCGGAGCTAACGCTATGTGGCAGTGGGACCGCTTCATCGACCGTTTTATCCCCCGCTTCAACGTCTACGTACCGGACCTCATCTTCTTTGGCGACTCCTACACCACTCGTCCCGACCGCTCAGAGTCTTTCCAGGCGACTTGTGTCATGAAGGCGATGGATGCTTACGGTGTTAGGACCATGACCGTCGCTGGCCTCAGCTACGGTGGTTTTGTGGCCTACTCCTTGGCGGCGCAGTTTAAGGAGAGGGTAGATCGAGTTGTGCTAATATGCGCCGGTGTTGCTCTGGAGGAGAAAGACTCGGAGGATGGTATGTTCAAAGTGAAGAGCCCGGAGGAAGCGGCGGCTGTTTTGTTTCCTCAGTCTCCTTCGATGCTCCGGCGGCTTCTCCAGTTATCTTTCTATAAACCGCCGATTTGGATCCCTTCTTGCTTTGCCATGGACTACATTCATGTAATGTGTAAAGACTATCTTCAAGAAAGGAAAGAACTTGTGGAAGCTCTGCATAAGGGTAGAAGATTCGCCAATCTTCCAAAGATAACACAGCCGACATTGATGATATGGGGAGAGGAAGATCAAGTATTTCCAGTTGAATTAGCTCATAGATTGAAAAGATATTTAGGGGAAGACAGAGCACAATTGGTGTTACTGAAGAAGACAGGACATGCGATTAATGAAGAGAAACCAAAAGAGATGTACAAACACATGAAATCTTTTCTTTGCACTGACGCAATGATTCCTCAGAATCACCAGATCAATGCTAAGAGACTCATGTTAGCAAACTTGATATCCCCAGATCAGCAGATCAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_4 Abhydrolase_6

Protein Analysis

328

Amino Acids

37.64

Weight (kDa)

8.9

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 50 - 286 5.2e-23 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 52 - 289 3.7e-17 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39955
fragaria_vesca FvH4_1g20610
malus_domestica MD01G1032400.v1.1
prunus_persica Prupe.6G189600_v2.0.a1
pyrus_communis pycom01g05960
rosa_chinensis RchiOBHm_Chr2g0113041
rosa_laevigata RLG00000018032
rosa_multiflora Rmu_co8372391.1_g000001 Rmu_sc0002351.1_g000106
rosa_roxburghii Rroxscaffold_2G00130920
rosa_rugosa Rorug02G0183400
rosa_samantha Rh2AG238600 Rh2BG252400 Rh2CG242600 Rh2DG246600
rosa_wichuraiana Rw2G018710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 291
AccI GTMKAC 1 cut(s) 237
AciI CCGC 8 cut(s) 202, 226, 289, 401, 512, 515, 553, 581
AclWI GGATC 5 cut(s) 115, 128, 179, 586, 599
AcuI CTGAAG 1 cut(s) 842
AfaI GTAC 2 cut(s) 243, 869
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 5 cut(s) 232, 490, 647, 764, 781
AjnI CCWGG 1 cut(s) 303
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 6 cut(s) 18, 54, 179, 372, 671, 770
AluI AGCT 6 cut(s) 18, 54, 179, 372, 671, 770
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 3 cut(s) 74, 540, 931
AlwI GGATC 5 cut(s) 115, 128, 179, 586, 599
AoxI GGCC 2 cut(s) 364, 387
AseI ATTAAT 1 cut(s) 843
AspLEI GCGC 2 cut(s) 406, 446
AspS9I GGNCC 3 cut(s) 199, 247, 348
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 911
AvaII GGWCC 3 cut(s) 199, 247, 348
BamHI GGATCC 2 cut(s) 120, 591
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 503
BauI CACGAG 1 cut(s) 60
BbsI GAAGAC 4 cut(s) 18, 100, 804, 833
Bbv12I GWGCWC 1 cut(s) 808
BbvCI CCTCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 322, 473
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 305
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 3 cut(s) 74, 540, 931
BisI GCNGC 4 cut(s) 402, 513, 516, 554
BlsI GCNGC 4 cut(s) 403, 514, 517, 555
Bme1390I CCNGG 2 cut(s) 305, 503
Bme18I GGWCC 3 cut(s) 199, 247, 348
BmgT120I GGNCC 3 cut(s) 199, 247, 348
BmiI GGNNCC 4 cut(s) 103, 122, 200, 593
BmrFI CCNGG 2 cut(s) 305, 503
BmsI GCATC 2 cut(s) 322, 534
BoxI GACNNNNGTC 1 cut(s) 314
BpiI GAAGAC 4 cut(s) 18, 100, 804, 833
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpmI CTGGAG 2 cut(s) 479, 545
Bpu10I CCTNAGC 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 503
BsaAI YACGTR 2 cut(s) 22, 241
BsaBI GATNNNNATC 1 cut(s) 590
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 396, 609
BsaWI WCCGGW 1 cut(s) 244
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 562, 758
Bse3DI GCAATG 1 cut(s) 909
Bse8I GATNNNNATC 1 cut(s) 590
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 2 cut(s) 396, 609
BseGI GGATG 3 cut(s) 135, 337, 484
BseJI GATNNNNATC 1 cut(s) 590
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 4 cut(s) 306, 382, 545, 926
BseNI ACTGG 2 cut(s) 562, 758
BseRI GAGGAG 3 cut(s) 146, 149, 476
Bsh1285I CGRYCG 2 cut(s) 214, 289
BshFI GGCC 2 cut(s) 366, 389
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 2 cut(s) 214, 289
BsiHKAI GWGCWC 1 cut(s) 808
BsiSI CCGG 4 cut(s) 245, 447, 503, 550
BslFI GGGAC 2 cut(s) 212, 267
BsmAI GTCTC 3 cut(s) 74, 540, 931
BsmFI GGGAC 2 cut(s) 212, 267
BsnI GGCC 2 cut(s) 366, 389
Bso31I GGTCTC 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 503, 808
Bsp1407I TGTACA 1 cut(s) 867
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 8 cut(s) 202, 226, 289, 401, 512, 515, 553, 581
BspANI GGCC 2 cut(s) 366, 389
BspCNI CTCAG 4 cut(s) 305, 381, 544, 925
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 4 cut(s) 103, 122, 200, 593
BspPI GGATC 5 cut(s) 115, 128, 179, 586, 599
BspQI GCTCTTC 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 867
BsrI ACTGG 2 cut(s) 562, 758
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 396, 609
BssSI CACGAG 1 cut(s) 60
BssT1I CCWWGG 2 cut(s) 396, 609
Bst2BI CACGAG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 6 cut(s) 106, 116, 215, 341, 358, 377
Bst6I CTCTTC 2 cut(s) 491, 843
BstAUI TGTACA 1 cut(s) 867
BstBAI YACGTR 2 cut(s) 22, 241
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 5 cut(s) 292, 368, 531, 912, 933
BstDSI CCRYGG 1 cut(s) 609
BstF5I GGATG 3 cut(s) 135, 337, 484
BstHHI GCGC 2 cut(s) 406, 446
BstMAI GTCTC 3 cut(s) 74, 540, 931
BstMCI CGRYCG 2 cut(s) 214, 289
BstMWI GCNNNNNNNGC 3 cut(s) 332, 452, 553
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 839
BstPAI GACNNNNGTC 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 303, 501
BstSNI TACGTA 1 cut(s) 241
BstV2I GAAGAC 4 cut(s) 18, 100, 804, 833
BstX2I RGATCY 2 cut(s) 120, 591
BstYI RGATCY 2 cut(s) 120, 591
BsuRI GGCC 2 cut(s) 366, 389
BtgI CCRYGG 1 cut(s) 609
BtgZI GCGATG 1 cut(s) 341
BtsCI GGATG 3 cut(s) 135, 337, 484
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 3 cut(s) 112, 200, 894
Cac8I GCNNGC 1 cut(s) 364
CciI TCATGA 1 cut(s) 318
CfoI GCGC 2 cut(s) 406, 446
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 3 cut(s) 199, 247, 348
CseI GACGC 1 cut(s) 908
Csp6I GTAC 2 cut(s) 242, 868
CviAII CATG 7 cut(s) 319, 352, 610, 623, 836, 877, 943
CviQI GTAC 2 cut(s) 242, 868
DdeI CTNAG 5 cut(s) 292, 368, 531, 912, 933
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 491, 843
EarI CTCTTC 2 cut(s) 491, 843
Eco105I TACGTA 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 396, 609
Eco24I GRGCYC 1 cut(s) 503
Eco31I GGTCTC 1 cut(s) 74
Eco32I GATATC 1 cut(s) 960
Eco47I GGWCC 3 cut(s) 199, 247, 348
Eco57I CTGAAG 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 1 cut(s) 960
EcoT14I CCWWGG 2 cut(s) 396, 609
EcoT38I GRGCYC 1 cut(s) 503
ErhI CCWWGG 2 cut(s) 396, 609
FaeI CATG 7 cut(s) 322, 355, 613, 626, 839, 880, 946
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 2 cut(s) 212, 267
FatI CATG 7 cut(s) 318, 351, 609, 622, 835, 876, 942
FauI CCCGC 1 cut(s) 233
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 402, 513, 516, 554
FokI GGATG 3 cut(s) 122, 344, 491
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 4 cut(s) 402, 513, 516, 554
GlaI GCGC 2 cut(s) 405, 445
GluI GCNGC 4 cut(s) 402, 513, 516, 554
GsuI CTGGAG 2 cut(s) 479, 545
HaeIII GGCC 2 cut(s) 366, 389
HapII CCGG 4 cut(s) 245, 447, 503, 550
HgaI GACGC 1 cut(s) 908
HhaI GCGC 2 cut(s) 406, 446
Hin1II CATG 7 cut(s) 322, 355, 613, 626, 839, 880, 946
Hin6I GCGC 2 cut(s) 404, 444
HinP1I GCGC 2 cut(s) 404, 444
HinfI GANTC 7 cut(s) 266, 296, 470, 690, 907, 916, 939
HpaII CCGG 4 cut(s) 245, 447, 503, 550
HphI GGTGA 1 cut(s) 911
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 6 cut(s) 74, 88, 176, 295, 475, 915
Hpy188III TCNNGA 4 cut(s) 284, 319, 458, 647
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 2 cut(s) 101, 362
HpyAV CCTTC 4 cut(s) 173, 316, 549, 606
HpyCH4III ACNGT 6 cut(s) 106, 116, 215, 341, 358, 377
HpyCH4IV ACGT 3 cut(s) 21, 234, 240
HpyCH4V TGCA 2 cut(s) 676, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 452, 553
HpyF3I CTNAG 5 cut(s) 292, 368, 531, 912, 933
HpySE526I ACGT 3 cut(s) 21, 234, 240
Hsp92II CATG 7 cut(s) 322, 355, 613, 626, 839, 880, 946
HspAI GCGC 2 cut(s) 404, 444
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 3 cut(s) 159, 176, 552
LweI GCATC 2 cut(s) 322, 534
MaeII ACGT 3 cut(s) 21, 234, 240
MaeIII GTNAC 3 cut(s) 32, 41, 816
MbiI CCGCTC 1 cut(s) 291
MfeI CAATTG 1 cut(s) 809
MflI RGATCY 2 cut(s) 120, 591
MhlI GDGCHC 2 cut(s) 503, 808
MluCI AATT 2 cut(s) 764, 809
MlyI GAGTC 4 cut(s) 260, 305, 464, 933
MmeI TCCRAC 1 cut(s) 98
MseI TTAA 2 cut(s) 411, 843
MspI CCGG 4 cut(s) 245, 447, 503, 550
MspR9I CCNGG 2 cut(s) 305, 503
MunI CAATTG 1 cut(s) 809
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 3 cut(s) 332, 452, 553
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 1 cut(s) 609
NlaIII CATG 7 cut(s) 322, 355, 613, 626, 839, 880, 946
NlaIV GGNNCC 4 cut(s) 103, 122, 200, 593
NspI RCATGY 1 cut(s) 839
PagI TCATGA 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 491
PfeI GAWTC 3 cut(s) 690, 907, 916
PkrI GCNGC 4 cut(s) 403, 514, 517, 555
PleI GAGTC 4 cut(s) 260, 304, 464, 933
PpsI GAGTC 4 cut(s) 260, 304, 464, 933
Ppu21I YACGTR 2 cut(s) 22, 241
PshAI GACNNNNGTC 1 cut(s) 314
PshBI ATTAAT 1 cut(s) 843
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 4 cut(s) 103, 122, 200, 593
PspPI GGNCC 3 cut(s) 199, 247, 348
PsuI RGATCY 2 cut(s) 120, 591
RsaI GTAC 2 cut(s) 243, 869
RsaNI GTAC 2 cut(s) 242, 868
SapI GCTCTTC 1 cut(s) 491
SaqAI TTAA 2 cut(s) 411, 843
SatI GCNGC 4 cut(s) 402, 513, 516, 554
Sau96I GGNCC 3 cut(s) 199, 247, 348
SchI GAGTC 4 cut(s) 260, 305, 464, 933
ScrFI CCNGG 2 cut(s) 305, 503
SduI GDGCHC 2 cut(s) 503, 808
SfaNI GCATC 2 cut(s) 322, 534
SgrAI CRCCGGYG 1 cut(s) 446
SinI GGWCC 3 cut(s) 199, 247, 348
SnaBI TACGTA 1 cut(s) 241
Sse9I AATT 2 cut(s) 764, 809
SsiI CCGC 8 cut(s) 202, 226, 289, 401, 512, 515, 553, 581
StyD4I CCNGG 2 cut(s) 303, 501
StyI CCWWGG 2 cut(s) 396, 609
TaaI ACNGT 6 cut(s) 106, 116, 215, 341, 358, 377
TaiI ACGT 3 cut(s) 24, 237, 243
TaqI TCGA 3 cut(s) 210, 427, 542
TasI AATT 2 cut(s) 764, 809
TatI WGTACW 1 cut(s) 867
TauI GCSGC 4 cut(s) 404, 515, 518, 556
TfiI GAWTC 3 cut(s) 690, 907, 916
Tru1I TTAA 2 cut(s) 411, 843
Tru9I TTAA 2 cut(s) 411, 843
TscAI CASTG 3 cut(s) 119, 200, 901
TspDTI ATGAA 5 cut(s) 196, 335, 611, 861, 893
TspRI CASTG 3 cut(s) 119, 200, 901
VpaK11BI GGWCC 3 cut(s) 199, 247, 348
VspI ATTAAT 1 cut(s) 843
XceI RCATGY 1 cut(s) 839
XmiI GTMKAC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.