Rmu_co8372391.1_g000001

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8372391.1
OG0015316
Physical Location & Seq
Forward (+)
72 .. 737
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8372391.1_g000001.1.cds

Sequence Viewer

Length: 666 bp
atgccgatgtgcttcagcttgatcgcttcgcgcgactcctgcttccgctactctttctcctccgccggcctcaagtccaccaccaccgatctcggcgaaggcaccatcatccacagctgggtccccaaacacccctccccatccaaacccaccctcctcctcatacatggcatcggcgccaacgcaatgtggcagtggcacgagttcatcacccctctcacttcccgcttcaacctctacgtccccgacctcattttcttcggggactcctattcgtcccgcagtgaacgctccgagacttttcaggcccagtgcgttatgggcctcatggaggcccatggcgtcaggggaaaaatgtacgtagccgggatcagctacggcgggttcgtggcctatagcatggcggctcagtatggggagaggattgagaggttggtgttgtgttgcgctggagtttgtgccgaggagaaggatatggagaaagggatgtttcaggtgaagagtgtggaggaggcagtgagtatattgctgccgcagagggcggcacaggtgaggcagttgatgaagatctcgttttacaagccggcgaccaatgtgccctcttgttttctcaacgattttattgaggtaatattattcataattccttcgttcagattgatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_4 Abhydrolase_6

Protein Analysis

221

Amino Acids

24.74

Weight (kDa)

7.6

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39955
fragaria_vesca FvH4_1g20610
malus_domestica MD01G1032400.v1.1
prunus_persica Prupe.6G189600_v2.0.a1
pyrus_communis pycom01g05960
rosa_chinensis RchiOBHm_Chr2g0113041
rosa_laevigata RLG00000018032
rosa_multiflora Rmu_co8372391.1_g000001 Rmu_sc0002351.1_g000106
rosa_roxburghii Rroxscaffold_2G00130920
rosa_rugosa Rorug02G0183400
rosa_samantha Rh2AG238600 Rh2BG252400 Rh2CG242600 Rh2DG246600
rosa_wichuraiana Rw2G018710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 101, 176
AccII CGCG 2 cut(s) 31, 33
AciI CCGC 8 cut(s) 46, 63, 226, 280, 381, 404, 533, 542
AclWI GGATC 1 cut(s) 377
AcyI GRCGYC 2 cut(s) 177, 342
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 118, 331
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 3 cut(s) 18, 117, 375
AluI AGCT 3 cut(s) 18, 117, 375
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 377
AoxI GGCC 5 cut(s) 67, 306, 322, 333, 390
ApeKI GCWGC 1 cut(s) 529
AspLEI GCGC 3 cut(s) 33, 179, 449
AspS9I GGNCC 4 cut(s) 121, 307, 322, 334
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 3 cut(s) 202, 508, 562
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 600
BanI GGYRCC 2 cut(s) 101, 176
BauI CACGAG 1 cut(s) 200
BbvI GCAGC 1 cut(s) 516
BccI CCATC 2 cut(s) 113, 148
BceAI ACGGC 1 cut(s) 394
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BcnI CCSGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 394
BfoI RGCGCY 1 cut(s) 180
BglII AGATCT 1 cut(s) 567
BisI GCNGC 4 cut(s) 405, 530, 533, 543
BlsI GCNGC 4 cut(s) 406, 531, 534, 544
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 4 cut(s) 121, 307, 322, 334
BmiI GGNNCC 4 cut(s) 103, 122, 123, 178
BmrFI CCNGG 1 cut(s) 367
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 367
BsaAI YACGTR 1 cut(s) 361
BsaBI GATNNNNATC 1 cut(s) 566
BsaHI GRCGYC 2 cut(s) 177, 342
BsaJI CCNNGG 2 cut(s) 337, 462
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 138, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 331
Bse118I RCCGGY 2 cut(s) 65, 583
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 337, 462
BseGI GGATG 3 cut(s) 108, 140, 492
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 2 cut(s) 118, 331
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 5 cut(s) 49, 146, 149, 479, 524
BseSI GKGCMC 1 cut(s) 600
BseXI GCAGC 1 cut(s) 516
BseYI CCCAGC 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 31, 33
BshFI GGCC 5 cut(s) 69, 308, 324, 335, 392
BshNI GGYRCC 2 cut(s) 101, 176
BsiSI CCGG 3 cut(s) 66, 366, 584
BslFI GGGAC 4 cut(s) 107, 227, 262, 278
BslI CCNNNNNNNGG 2 cut(s) 118, 331
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 4 cut(s) 107, 227, 262, 278
BsnI GGCC 5 cut(s) 69, 308, 324, 335, 392
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 4 cut(s) 21, 88, 369, 567
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 8 cut(s) 46, 63, 226, 280, 381, 404, 533, 542
BspANI GGCC 5 cut(s) 69, 308, 324, 335, 392
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 2 cut(s) 31, 33
BspLI GGNNCC 4 cut(s) 103, 122, 123, 178
BspPI GGATC 1 cut(s) 377
BspT107I GGYRCC 2 cut(s) 101, 176
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 2 cut(s) 65, 583
BsrI ACTGG 1 cut(s) 310
BssAI RCCGGY 2 cut(s) 65, 583
BssECI CCNNGG 2 cut(s) 337, 462
BssMI GATC 4 cut(s) 21, 88, 369, 567
BssNI GRCGYC 2 cut(s) 177, 342
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 337
Bst2BI CACGAG 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 494
BstACI GRCGYC 2 cut(s) 177, 342
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 67, 585
BstDEI CTNAG 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 337
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 3 cut(s) 108, 140, 492
BstFNI CGCG 2 cut(s) 31, 33
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 3 cut(s) 33, 179, 449
BstKTI GATC 4 cut(s) 24, 91, 372, 570
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 4 cut(s) 21, 88, 369, 567
BstMWI GCNNNNNNNGC 3 cut(s) 39, 288, 321
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 394
BstSLI GKGCMC 1 cut(s) 600
BstSNI TACGTA 1 cut(s) 361
BstUI CGCG 2 cut(s) 31, 33
BstV1I GCAGC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
BsuRI GGCC 5 cut(s) 69, 308, 324, 335, 392
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 3 cut(s) 108, 140, 492
BtsI GCAGTG 3 cut(s) 200, 289, 522
BtsIMutI CAGTG 4 cut(s) 200, 289, 317, 522
Cac8I GCNNGC 2 cut(s) 67, 585
CfoI GCGC 3 cut(s) 33, 179, 449
Cfr10I RCCGGY 2 cut(s) 65, 583
Cfr13I GGNCC 4 cut(s) 121, 307, 322, 334
CseI GACGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 358
CviAII CATG 4 cut(s) 167, 328, 338, 400
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 408
DinI GGCGCC 1 cut(s) 178
DpnI GATC 4 cut(s) 23, 90, 371, 569
DpnII GATC 4 cut(s) 21, 88, 369, 567
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
EciI GGCGGA 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 337
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 4 cut(s) 170, 331, 341, 403
FaqI GGGAC 4 cut(s) 107, 227, 262, 278
FatI CATG 4 cut(s) 166, 327, 337, 399
FauI CCCGC 3 cut(s) 233, 287, 374
Fnu4HI GCNGC 4 cut(s) 405, 530, 533, 543
FokI GGATG 3 cut(s) 95, 127, 499
Fsp4HI GCNGC 4 cut(s) 405, 530, 533, 543
GlaI GCGC 3 cut(s) 32, 178, 448
GluI GCNGC 4 cut(s) 405, 530, 533, 543
GsaI CCCAGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 5 cut(s) 69, 308, 324, 335, 392
HapII CCGG 3 cut(s) 66, 366, 584
HgaI GACGC 1 cut(s) 331
HhaI GCGC 3 cut(s) 33, 179, 449
Hin1I GRCGYC 2 cut(s) 177, 342
Hin1II CATG 4 cut(s) 170, 331, 341, 403
Hin6I GCGC 3 cut(s) 31, 177, 447
HinP1I GCGC 3 cut(s) 31, 177, 447
HinfI GANTC 2 cut(s) 35, 266
HpaII CCGG 3 cut(s) 66, 366, 584
HphI GGTGA 3 cut(s) 202, 508, 562
Hpy166II GTNNAC 2 cut(s) 78, 287
Hpy188I TCNGA 2 cut(s) 295, 656
Hpy8I GTNNAC 2 cut(s) 78, 287
HpyAV CCTTC 3 cut(s) 92, 463, 657
HpyCH4IV ACGT 2 cut(s) 240, 360
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 288, 321
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 2 cut(s) 240, 360
Hsp92I GRCGYC 2 cut(s) 177, 342
Hsp92II CATG 4 cut(s) 170, 331, 341, 403
HspAI GCGC 3 cut(s) 31, 177, 447
KasI GGCGCC 1 cut(s) 176
KflI GGGWCCC 1 cut(s) 121
KroI GCCGGC 2 cut(s) 65, 583
KroNI GCCGGC 2 cut(s) 67, 585
Kzo9I GATC 4 cut(s) 21, 88, 369, 567
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 1 cut(s) 516
LweI GCATC 1 cut(s) 180
MaeII ACGT 2 cut(s) 240, 360
MalI GATC 4 cut(s) 23, 90, 371, 569
MboI GATC 4 cut(s) 21, 88, 369, 567
MboII GAAGA 3 cut(s) 250, 511, 577
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 1 cut(s) 642
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 2 cut(s) 29, 260
MroNI GCCGGC 2 cut(s) 65, 583
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 3 cut(s) 66, 366, 584
MspR9I CCNGG 1 cut(s) 367
MvnI CGCG 2 cut(s) 31, 33
MwoI GCNNNNNNNGC 3 cut(s) 39, 288, 321
NaeI GCCGGC 2 cut(s) 67, 585
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 1 cut(s) 367
NcoI CCATGG 1 cut(s) 337
NdeII GATC 4 cut(s) 21, 88, 369, 567
NgoMIV GCCGGC 2 cut(s) 65, 583
NlaIII CATG 4 cut(s) 170, 331, 341, 403
NlaIV GGNNCC 4 cut(s) 103, 122, 123, 178
NmeAIII GCCGAG 2 cut(s) 72, 487
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 384
PdiI GCCGGC 2 cut(s) 67, 585
PkrI GCNGC 4 cut(s) 406, 531, 534, 544
PleI GAGTC 2 cut(s) 29, 260
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 2 cut(s) 29, 260
Ppu21I YACGTR 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 117
PspN4I GGNNCC 4 cut(s) 103, 122, 123, 178
PspPI GGNCC 4 cut(s) 121, 307, 322, 334
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 567
PvuII CAGCTG 1 cut(s) 117
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SatI GCNGC 4 cut(s) 405, 530, 533, 543
Sau3AI GATC 4 cut(s) 21, 88, 369, 567
Sau96I GGNCC 4 cut(s) 121, 307, 322, 334
SchI GAGTC 2 cut(s) 29, 260
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 394
SfoI GGCGCC 1 cut(s) 178
SinI GGWCC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SnaBI TACGTA 1 cut(s) 361
Sse9I AATT 1 cut(s) 642
SsiI CCGC 8 cut(s) 46, 63, 226, 280, 381, 404, 533, 542
SspDI GGCGCC 1 cut(s) 176
SspI AATATT 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 337
TaiI ACGT 2 cut(s) 243, 363
TasI AATT 1 cut(s) 642
TauI GCSGC 3 cut(s) 407, 535, 545
TscAI CASTG 4 cut(s) 200, 289, 317, 522
TseI GCWGC 1 cut(s) 529
TspDTI ATGAA 3 cut(s) 196, 578, 628
TspRI CASTG 4 cut(s) 200, 289, 317, 522
VpaK11BI GGWCC 1 cut(s) 121
XagI CCTNNNNNAGG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.