Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008635

Physical Location & Seq

Genomic Coordinates Forward (+)

18533734 .. 18536618

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGCTCTTATACAATTTGGAAGTTCATGTGTTGCTCAATGGGGGATTCTTCGTCCTCGGTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAGACAATTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGGGCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCCTAATACACATTCTCGTAGAGGAGCTCGCTTCACTGTTAGAGCTGATACTGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATGTGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCTTATCAGATGATGAGAAAAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCGCTGGAATGGGAGGCATGGGGGATTATAGTAATCCGTTTGATCTATTTGAGTCATTATTCGAAGGAATGGGTGGGATGGGAGGAATGGGCGGTGGAATGGGTAGTAGAGGTTCAAGGAGCAGAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTTTCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGCAATGGTTCTGGAGCTAAAGCGGGAACCAAACCAACCAAATGCAAAACATGTGGCGGGCAAGGACAGGTGGTAGCATCAACGAGGACACCACTCGGTGTATTCCAACAAGTGATGACTTGCTCTCCGTGTAACGGAACTGGGGAGATATCAAAACCGTGTGGTGCATGCTCAGGAGATGGACGTGTGAGAAGGACAAAGCGGATTAGTCTTAAAGTTCCTGCGGGTGTGGATTCTGGAAGTAGGTTAAGAGTGAGGGGAGAAGGGAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCGGTTATTGAGGTTATTCCAGATCCGGTTTTGAAGCGTGATGATACAAATATACTTTATACGTGTAAGATATCGTATGTAGATGCCATATTGGGGACGACTTTGAAGGTACCAACAGTGGATGGAGAGGTGGATTTGAAAGTACCGGCAGGGACACAACCAAGCACGACATTGGTGATGGCTAAAAAAGGAGTTCCGGTTTTGAATAAGAGCAAGATGAGAGGTGATCAGTTAGTGAGAGTGCAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGATGCTTGTTGAGGAGCTGGCTGATATGAGCAAGAACAAGGTAGCTAATAGCAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

447

Amino Acids

48.03

Weight (kDa)

9.22

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	85 - 146	2.2e-27	DnaJ domain
DnaJ_C	PF01556	205 - 420	3.9e-45	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	230 - 293	1.4e-14	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22360 AT4G39960 AT4G39960
fragaria_vesca	FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510
malus_domestica	MD09G1219300.v1.1 MD17G1202800.v1.1
prunus_persica	Prupe.3G078100_v2.0.a1 Prupe.3G078100_v2.0.a1
pyrus_communis	pycom17g20670
rosa_chinensis	RchiOBHm_Chr2g0136911
rosa_laevigata	RLG00000019588
rosa_multiflora	Rmu_ssc0000071.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107880
rosa_rugosa	Rorug02G0335200
rosa_samantha	Rh2AG385200 Rh2BG392300 Rh2CG372500 Rh2DG408500
rosa_wichuraiana	Rw2G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1111
AccB1I	GGYRCC	1 cut(s)	1111
AciI	CCGC	7 cut(s)	555, 641, 719, 753, 898, 920, 1004
AclWI	GGATC	2 cut(s)	991, 1019
AcsI	RAATTY	2 cut(s)	374, 628
AdeI	CACNNNGTG	1 cut(s)	794
AfaI	GTAC	2 cut(s)	1113, 1146
AfeI	AGCGCT	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	830, 1095
AflIII	ACRYGT	3 cut(s)	746, 880, 1064
AgsI	TTSAA	8 cut(s)	144, 579, 628, 634, 1036, 1108, 1141, 1207
AjiI	CACGTC	1 cut(s)	881
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	102, 280
AlwI	GGATC	2 cut(s)	991, 1019
Aor51HI	AGCGCT	1 cut(s)	310
ApoI	RAATTY	2 cut(s)	374, 628
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
Asp718I	GGTACC	1 cut(s)	1111
AspLEI	GCGC	2 cut(s)	311, 467
AsuC2I	CCSGG	1 cut(s)	990
AsuHPI	GGTGA	5 cut(s)	92, 611, 978, 1189, 1238
AsuII	TTCGAA	1 cut(s)	525
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BanI	GGYRCC	1 cut(s)	1111
BanII	GRGCYC	2 cut(s)	170, 229
Bbv12I	GWGCWC	1 cut(s)	229
BccI	CCATC	5 cut(s)	535, 590, 869, 1118, 1174
BcgI	CGANNNNNNTGC	2 cut(s)	574, 608
BclI	TGATCA	1 cut(s)	1228
BcnI	CCSGG	1 cut(s)	990
BcoDI	GTCTC	2 cut(s)	102, 280
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	2 cut(s)	312, 468
BglII	AGATCT	3 cut(s)	402, 425, 994
Bme1390I	CCNGG	1 cut(s)	990
BmgBI	CACGTC	1 cut(s)	881
BmiI	GGNNCC	2 cut(s)	724, 1113
BmrFI	CCNGG	1 cut(s)	990
BmrI	ACTGGG	1 cut(s)	846
BmsI	GCATC	5 cut(s)	123, 346, 782, 1075, 1275
BmuI	ACTGGG	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	599, 631
BpmI	CTGGAG	1 cut(s)	729
Bpu10I	CCTNAGC	1 cut(s)	868
Bpu14I	TTCGAA	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	990
Bsa29I	ATCGAT	1 cut(s)	594
BsaAI	YACGTR	1 cut(s)	1065
BsaJI	CCNNGG	2 cut(s)	56, 268
BsaWI	WCCGGW	2 cut(s)	1027, 1198
BsaXI	ACNNNNNCTCC	4 cut(s)	805, 835, 1185, 1215
Bsc4I	CCNNNNNNNGG	2 cut(s)	830, 1095
Bse118I	RCCGGY	1 cut(s)	1147
Bse1I	ACTGG	1 cut(s)	841
Bse3DI	GCAATG	1 cut(s)	706
BseCI	ATCGAT	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	56, 268
BseGI	GGATG	4 cut(s)	337, 361, 546, 1129
BseLI	CCNNNNNNNGG	2 cut(s)	830, 1095
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	2 cut(s)	288, 882
BseNI	ACTGG	1 cut(s)	841
BseRI	GAGGAG	2 cut(s)	237, 1310
BseYI	CCCAGC	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	1111
BshVI	ATCGAT	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	989, 1028, 1148, 1199
BslFI	GGGAC	3 cut(s)	706, 1111, 1168
BslI	CCNNNNNNNGG	2 cut(s)	830, 1095
BsmAI	GTCTC	2 cut(s)	102, 280
BsmFI	GGGAC	3 cut(s)	706, 1111, 1168
BsmI	GAATGC	1 cut(s)	970
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	170, 229
Bsp143I	GATC	7 cut(s)	402, 425, 505, 983, 994, 1024, 1228
BspACI	CCGC	7 cut(s)	555, 641, 719, 753, 898, 920, 1004
BspCNI	CTCAG	2 cut(s)	289, 881
BspDI	ATCGAT	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	724, 1113
BspPI	GGATC	2 cut(s)	991, 1019
BspT104I	TTCGAA	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	1111
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	1147
BsrI	ACTGG	1 cut(s)	841
BssAI	RCCGGY	1 cut(s)	1147
BssECI	CCNNGG	2 cut(s)	56, 268
BssMI	GATC	7 cut(s)	402, 425, 505, 983, 994, 1024, 1228
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	3 cut(s)	238, 855, 1120
Bst6I	CTCTTC	1 cut(s)	1272
BstBAI	YACGTR	1 cut(s)	1065
BstBI	TTCGAA	1 cut(s)	525
BstC8I	GCNNGC	5 cut(s)	229, 324, 755, 865, 1302
BstDEI	CTNAG	3 cut(s)	297, 868, 1260
BstF5I	GGATG	4 cut(s)	337, 361, 546, 1129
BstH2I	RGCGCY	2 cut(s)	312, 468
BstHHI	GCGC	2 cut(s)	311, 467
BstKTI	GATC	7 cut(s)	405, 428, 508, 986, 997, 1027, 1231
BstMAI	GTCTC	2 cut(s)	102, 280
BstMBI	GATC	7 cut(s)	402, 425, 505, 983, 994, 1024, 1228
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 293
BstNSI	RCATGY	2 cut(s)	750, 867
BstSCI	CCNGG	1 cut(s)	988
BstX2I	RGATCY	4 cut(s)	402, 425, 994, 1024
BstYI	RGATCY	4 cut(s)	402, 425, 994, 1024
Bsu15I	ATCGAT	1 cut(s)	594
BsuTUI	ATCGAT	1 cut(s)	594
BtrI	CACGTC	1 cut(s)	881
BtsCI	GGATG	4 cut(s)	337, 361, 546, 1129
BtsIMutI	CAGTG	2 cut(s)	234, 1125
Cac8I	GCNNGC	5 cut(s)	229, 324, 755, 865, 1302
CfoI	GCGC	2 cut(s)	311, 467
Cfr10I	RCCGGY	1 cut(s)	1147
ClaI	ATCGAT	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	1112, 1145
CspCI	CAANNNNNGTGG	2 cut(s)	730, 765
CviAII	CATG	4 cut(s)	27, 481, 747, 864
CviQI	GTAC	2 cut(s)	1112, 1145
DdeI	CTNAG	3 cut(s)	297, 868, 1260
DpnI	GATC	7 cut(s)	404, 427, 507, 985, 996, 1026, 1230
DpnII	GATC	7 cut(s)	402, 425, 505, 983, 994, 1024, 1228
DraI	TTTAAA	1 cut(s)	379
DraIII	CACNNNGTG	1 cut(s)	794
Eam1104I	CTCTTC	1 cut(s)	1272
EarI	CTCTTC	1 cut(s)	1272
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	170, 229
Eco32I	GATATC	3 cut(s)	672, 846, 1074
Eco47III	AGCGCT	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	227
EcoRV	GATATC	3 cut(s)	672, 846, 1074
EcoT14I	CCWWGG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	2 cut(s)	170, 229
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	4 cut(s)	30, 484, 750, 867
FaqI	GGGAC	3 cut(s)	706, 1111, 1168
FatI	CATG	4 cut(s)	26, 480, 746, 863
FauI	CCCGC	3 cut(s)	712, 746, 913
FauNDI	CATATG	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	1228
FokI	GGATG	4 cut(s)	324, 368, 553, 1136
FriOI	GRGCYC	2 cut(s)	170, 229
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	2 cut(s)	310, 466
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	729
HaeII	RGCGCY	2 cut(s)	312, 468
HapII	CCGG	4 cut(s)	989, 1028, 1148, 1199
HhaI	GCGC	2 cut(s)	311, 467
Hin1II	CATG	4 cut(s)	30, 484, 750, 867
Hin6I	GCGC	2 cut(s)	309, 465
HinP1I	GCGC	2 cut(s)	309, 465
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	6 cut(s)	46, 95, 273, 515, 929, 1255
HpaII	CCGG	4 cut(s)	989, 1028, 1148, 1199
HphI	GGTGA	5 cut(s)	92, 611, 978, 1189, 1238
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	318, 412
Hpy188III	TCNNGA	7 cut(s)	277, 341, 625, 708, 870, 933, 1022
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	5 cut(s)	187, 521, 882, 953, 1102
HpyCH4III	ACNGT	3 cut(s)	238, 855, 1120
HpyCH4IV	ACGT	2 cut(s)	880, 1064
HpyCH4V	TGCA	9 cut(s)	114, 161, 287, 395, 699, 741, 863, 968, 1246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 293
HpyF3I	CTNAG	3 cut(s)	297, 868, 1260
HpySE526I	ACGT	2 cut(s)	880, 1064
Hsp92II	CATG	4 cut(s)	30, 484, 750, 867
HspAI	GCGC	2 cut(s)	309, 465
KpnI	GGTACC	1 cut(s)	1115
Ksp22I	TGATCA	1 cut(s)	1228
Kzo9I	GATC	7 cut(s)	402, 425, 505, 983, 994, 1024, 1228
LmnI	GCTCC	5 cut(s)	137, 224, 582, 710, 1297
LweI	GCATC	5 cut(s)	123, 346, 782, 1075, 1275
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	2 cut(s)	880, 1064
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	7 cut(s)	404, 427, 507, 985, 996, 1026, 1230
MboI	GATC	7 cut(s)	402, 425, 505, 983, 994, 1024, 1228
MboII	GAAGA	5 cut(s)	41, 380, 614, 1289, 1294
MfeI	CAATTG	1 cut(s)	109
MflI	RGATCY	4 cut(s)	402, 425, 994, 1024
MhlI	GDGCHC	2 cut(s)	170, 229
MluCI	AATT	6 cut(s)	14, 109, 127, 374, 628, 663
MlyI	GAGTC	3 cut(s)	104, 282, 524
MmeI	TCCRAC	1 cut(s)	826
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	6 cut(s)	69, 303, 378, 459, 909, 944
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	4 cut(s)	989, 1028, 1148, 1199
MspR9I	CCNGG	1 cut(s)	990
MunI	CAATTG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	970
MwoI	GCNNNNNNNGC	2 cut(s)	71, 293
NciI	CCSGG	1 cut(s)	990
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	7 cut(s)	402, 425, 505, 983, 994, 1024, 1228
NlaIII	CATG	4 cut(s)	30, 484, 750, 867
NlaIV	GGNNCC	2 cut(s)	724, 1113
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	2 cut(s)	750, 867
NspV	TTCGAA	1 cut(s)	525
PaeI	GCATGC	1 cut(s)	867
PciI	ACATGT	1 cut(s)	746
PctI	GAATGC	1 cut(s)	970
PfeI	GAWTC	3 cut(s)	46, 929, 1255
PleI	GAGTC	3 cut(s)	103, 281, 523
PpsI	GAGTC	3 cut(s)	103, 281, 523
Ppu21I	YACGTR	1 cut(s)	1065
PscI	ACATGT	1 cut(s)	746
Psp124BI	GAGCTC	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	724, 1113
PsrI	GAACNNNNNNTAC	2 cut(s)	559, 591
PsuI	RGATCY	4 cut(s)	402, 425, 994, 1024
RsaI	GTAC	2 cut(s)	1113, 1146
RsaNI	GTAC	2 cut(s)	1112, 1145
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	6 cut(s)	69, 303, 378, 459, 909, 944
Sau3AI	GATC	7 cut(s)	402, 425, 505, 983, 994, 1024, 1228
SchI	GAGTC	3 cut(s)	104, 282, 524
ScrFI	CCNGG	1 cut(s)	990
SduI	GDGCHC	2 cut(s)	170, 229
SfaNI	GCATC	5 cut(s)	123, 346, 782, 1075, 1275
SfuI	TTCGAA	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	342
SphI	GCATGC	1 cut(s)	867
Sse9I	AATT	6 cut(s)	14, 109, 127, 374, 628, 663
SsiI	CCGC	7 cut(s)	555, 641, 719, 753, 898, 920, 1004
SspMI	CTAG	1 cut(s)	327
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	988
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	238, 855, 1120
TaiI	ACGT	2 cut(s)	883, 1067
TaqI	TCGA	4 cut(s)	149, 278, 525, 594
TasI	AATT	6 cut(s)	14, 109, 127, 374, 628, 663
TfiI	GAWTC	3 cut(s)	46, 929, 1255
Tru1I	TTAA	6 cut(s)	69, 303, 378, 459, 909, 944
Tru9I	TTAA	6 cut(s)	69, 303, 378, 459, 909, 944
TscAI	CASTG	2 cut(s)	241, 1125
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	3 cut(s)	489, 813, 846
TspRI	CASTG	2 cut(s)	241, 1125
XapI	RAATTY	2 cut(s)	374, 628
XceI	RCATGY	2 cut(s)	750, 867
XspI	CTAG	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.