Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008635

Physical Location & Seq

Genomic Coordinates Reverse (-)

19094149 .. 19097820

Gene Structure 3672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20670.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCGAGTAAATCAGAAATTAAAAGCGCTTATCGGAAGCTTGCAAGAAGTTATCATCCAGATGTTAACAAAACCCGGGGCAGAAACAAAATTCAAGGAAATCAGTAATGCATATGAGGTCTTGTCTGATGATGAAAAACGATCACTATATGACAAGTATGGAGAGGCTGGAATTAAAGGTGCTGGTATGGGTACGGGGGATTTCAGCAACCCATTTGATCTGTTCGAGTCCCTATTTGAGGGCATGGGCGGTATGGGTGGGATGGGTGGTATGGGTGGGATGGGCGGAATGGGGGGCAGAGGTTCTAGGAGTCGAGCGGTTGATGGCCAGGATGAATATTATAATCTTGTGTTGAACTTCAAGGAAGCAGTTTTTGGGGTTGAAAAGGAGATTGAAATTAGCCGATTGGAGAGCTGCGGGACTTGCAATGGTTCTGGTGCTAAACCAGGCACCAAGGCATCCAGATGCAGCACATGTGGTGGGCAAGGTCAGGTTGTTCAATCAGCAAGGACTCCGTTAGGTGTCTTCCAACAGGTCATGACGTGCTCATCATGCGGTGGGACTGGGGAAACATCCATCCCTTGTAACACTTGCTCTGGGGATGGTCGGGTGAGGAGGACAAAGCGGATCAGTTTGAAGGTTCCTGCTGGTGTGGACTCTGGGAGCCGTTTAAGAGTCCGAAATGAAGGTAATGCTGGAAGGCGGGGTGGGTCTCCTGGTGACCTATTTGTTATTATAGATGTCATATCAGACCCTGTCCTCAAACGTGATGATACCAACATACTGTACACCTGCAAGGTATCCTATATAGATGCAATATTGGGGACTACGATTAAGGTTCCATCGGTGGATGGGATGGTTGATTTGAAGATTCCAGCTGGTACCCAACCGAACACAACCCTTGTGATGGCAAAGAAAGGTGTTCCCCTCTTAAACAAAAGCAACATGAGAGGTGATCAGCTCGTCCGCGTGCAGGTTGAAATCCCAAAGAGATTGAGCACTGATGAGAAGAAGCTCATCGAAGAACTTGCGAGTCTAAGCAAGGGCAAGGCTGCAAGCAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

356

Amino Acids

37.74

Weight (kDa)

9.12

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22360 AT4G39960 AT4G39960
fragaria_vesca	FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510
malus_domestica	MD09G1219300.v1.1 MD17G1202800.v1.1
prunus_persica	Prupe.3G078100_v2.0.a1 Prupe.3G078100_v2.0.a1
pyrus_communis	pycom17g20670
rosa_chinensis	RchiOBHm_Chr2g0136911
rosa_laevigata	RLG00000019588
rosa_multiflora	Rmu_ssc0000071.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107880
rosa_rugosa	Rorug02G0335200
rosa_samantha	Rh2AG385200 Rh2BG392300 Rh2CG372500 Rh2DG408500
rosa_wichuraiana	Rw2G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
AarI	CACCTGC	1 cut(s)	800
Acc36I	ACCTGC	2 cut(s)	800, 964
Acc65I	GGTACC	1 cut(s)	881
AccB1I	GGYRCC	2 cut(s)	449, 881
AccBSI	CCGCTC	1 cut(s)	317
AccII	CGCG	1 cut(s)	969
AciI	CCGC	8 cut(s)	249, 285, 317, 417, 555, 625, 703, 967
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	3 cut(s)	193, 788, 883
AfeI	AGCGCT	1 cut(s)	27
AfiI	CCNNNNNNNGG	3 cut(s)	238, 907, 973
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	9 cut(s)	94, 355, 361, 383, 395, 500, 637, 868, 980
AjiI	CACGTC	1 cut(s)	543
AjnI	CCWGG	3 cut(s)	327, 445, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AluBI	AGCT	5 cut(s)	39, 414, 878, 961, 1015
AluI	AGCT	5 cut(s)	39, 414, 878, 961, 1015
Alw21I	GWGCWC	2 cut(s)	548, 1001
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	755
Ama87I	CYCGRG	1 cut(s)	74
Aor51HI	AGCGCT	1 cut(s)	27
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	3 cut(s)	414, 468, 1052
ApoI	RAATTY	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	881
AspLEI	GCGC	1 cut(s)	28
AsuC2I	CCSGG	2 cut(s)	75, 76
AsuHPI	GGTGA	3 cut(s)	622, 731, 965
AvaI	CYCGRG	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	327
BanI	GGYRCC	2 cut(s)	449, 881
BbsI	GAAGAC	1 cut(s)	517
Bbv12I	GWGCWC	2 cut(s)	548, 1001
BbvI	GCAGC	3 cut(s)	401, 480, 1039
BccI	CCATC	9 cut(s)	256, 274, 317, 584, 596, 845, 850, 850, 901
BceAI	ACGGC	1 cut(s)	651
BcgI	CGANNNNNNTGC	2 cut(s)	1010, 1044
BciT130I	CCWGG	3 cut(s)	329, 447, 717
BciVI	GTATCC	1 cut(s)	811
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	2 cut(s)	75, 76
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	2 cut(s)	800, 964
BfuI	GTATCC	1 cut(s)	811
BisI	GCNGC	3 cut(s)	415, 469, 1053
BlsI	GCNGC	3 cut(s)	416, 470, 1054
Bme1390I	CCNGG	5 cut(s)	75, 76, 329, 447, 717
BmeT110I	CYCGRG	1 cut(s)	74
BmgBI	CACGTC	1 cut(s)	543
BmiI	GGNNCC	5 cut(s)	451, 642, 665, 840, 883
BmrFI	CCNGG	5 cut(s)	75, 76, 329, 447, 717
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	3 cut(s)	455, 467, 802
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	517
BpuMI	CCSGG	2 cut(s)	75, 76
BsaI	GGTCTC	1 cut(s)	717
BsaJI	CCNNGG	3 cut(s)	74, 75, 453
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 907, 973
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	433
BseBI	CCWGG	3 cut(s)	329, 447, 717
BseDI	CCNNGG	3 cut(s)	74, 75, 453
BseLI	CCNNNNNNNGG	3 cut(s)	238, 907, 973
BseMI	GCAATG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	628
BseXI	GCAGC	3 cut(s)	401, 480, 1039
BsgI	GTGCAG	1 cut(s)	992
Bsh1236I	CGCG	1 cut(s)	969
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	2 cut(s)	449, 881
BsiHKAI	GWGCWC	2 cut(s)	548, 1001
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	4 cut(s)	214, 433, 574, 838
BslI	CCNNNNNNNGG	3 cut(s)	238, 907, 973
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	4 cut(s)	214, 433, 574, 838
BsnI	GGCC	1 cut(s)	327
Bso31I	GGTCTC	1 cut(s)	717
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	548, 1001
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	4 cut(s)	140, 217, 627, 955
BspACI	CCGC	8 cut(s)	249, 285, 317, 417, 555, 625, 703, 967
BspANI	GGCC	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	969
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	5 cut(s)	451, 642, 665, 840, 883
BspMI	ACCTGC	2 cut(s)	800, 964
BspPI	GGATC	1 cut(s)	635
BspT107I	GGYRCC	2 cut(s)	449, 881
BspTNI	GGTCTC	1 cut(s)	717
BsrBI	CCGCTC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	3 cut(s)	74, 75, 453
BssMI	GATC	4 cut(s)	140, 217, 627, 955
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	3 cut(s)	329, 447, 717
Bst4CI	ACNGT	1 cut(s)	786
BstAUI	TGTACA	1 cut(s)	786
BstC8I	GCNNGC	3 cut(s)	41, 971, 1057
BstDEI	CTNAG	1 cut(s)	1037
BstEII	GGTNACC	1 cut(s)	719
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstFNI	CGCG	1 cut(s)	969
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	4 cut(s)	143, 220, 630, 958
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	4 cut(s)	140, 217, 627, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	423, 552
BstNI	CCWGG	3 cut(s)	329, 447, 717
BstNSI	RCATGY	1 cut(s)	477
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	5 cut(s)	73, 74, 327, 445, 715
BstUI	CGCG	1 cut(s)	969
BstV1I	GCAGC	3 cut(s)	401, 480, 1039
BstV2I	GAAGAC	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	999
BveI	ACCTGC	2 cut(s)	800, 964
Cac8I	GCNNGC	3 cut(s)	41, 971, 1057
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	28
Cfr9I	CCCGGG	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	192, 787, 882
CviAII	CATG	5 cut(s)	244, 474, 538, 552, 946
CviQI	GTAC	3 cut(s)	192, 787, 882
DdeI	CTNAG	1 cut(s)	1037
DpnI	GATC	4 cut(s)	142, 219, 629, 957
DpnII	GATC	4 cut(s)	140, 217, 627, 955
EaeI	YGGCCR	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	717
Eco47III	AGCGCT	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	719
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	719
EcoRII	CCWGG	3 cut(s)	327, 445, 715
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	5 cut(s)	247, 477, 541, 555, 949
FaqI	GGGAC	4 cut(s)	214, 433, 574, 838
FatI	CATG	5 cut(s)	243, 473, 537, 551, 945
FauI	CCCGC	2 cut(s)	410, 696
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	955
Fnu4HI	GCNGC	3 cut(s)	415, 469, 1053
Fsp4HI	GCNGC	3 cut(s)	415, 469, 1053
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	415, 469, 1053
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	5 cut(s)	247, 477, 541, 555, 949
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	7 cut(s)	227, 310, 511, 656, 675, 871, 1033
HpaI	GTTAAC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	622, 731, 965
Hpy166II	GTNNAC	3 cut(s)	66, 655, 789
Hpy188I	TCNGA	5 cut(s)	15, 35, 127, 680, 751
Hpy188III	TCNNGA	3 cut(s)	58, 462, 538
Hpy8I	GTNNAC	3 cut(s)	66, 655, 789
HpyAV	CCTTC	3 cut(s)	631, 680, 693
HpyCH4III	ACNGT	1 cut(s)	786
HpyCH4IV	ACGT	2 cut(s)	542, 766
HpyCH4V	TGCA	8 cut(s)	43, 110, 426, 468, 795, 815, 973, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	423, 552
HpyF3I	CTNAG	1 cut(s)	1037
HpySE526I	ACGT	2 cut(s)	542, 766
Hsp92II	CATG	5 cut(s)	247, 477, 541, 555, 949
HspAI	GCGC	1 cut(s)	26
KpnI	GGTACC	1 cut(s)	885
Ksp22I	TGATCA	1 cut(s)	955
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	140, 217, 627, 955
LmnI	GCTCC	1 cut(s)	663
Lsp1109I	GCAGC	3 cut(s)	401, 480, 1039
LweI	GCATC	3 cut(s)	455, 467, 802
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	542, 766
MaeIII	GTNAC	2 cut(s)	584, 719
MalI	GATC	4 cut(s)	142, 219, 629, 957
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	4 cut(s)	140, 217, 627, 955
MboII	GAAGA	4 cut(s)	517, 880, 1021, 1034
MhlI	GDGCHC	2 cut(s)	548, 1001
MlsI	TGGCCA	1 cut(s)	327
MluCI	AATT	4 cut(s)	17, 89, 171, 396
MluNI	TGGCCA	1 cut(s)	327
MlyI	GAGTC	6 cut(s)	236, 319, 505, 650, 684, 1042
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	9 cut(s)	109, 157, 232, 293, 606, 609, 770, 938, 944
Mox20I	TGGCCA	1 cut(s)	327
Mph1103I	ATGCAT	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	327
MseI	TTAA	6 cut(s)	20, 65, 174, 671, 834, 932
MslI	CAYNNNNRTG	2 cut(s)	59, 463
Msp20I	TGGCCA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	5 cut(s)	75, 76, 329, 447, 717
MvaI	CCWGG	3 cut(s)	329, 447, 717
MvnI	CGCG	1 cut(s)	969
MwoI	GCNNNNNNNGC	2 cut(s)	423, 552
NciI	CCSGG	2 cut(s)	75, 76
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	4 cut(s)	140, 217, 627, 955
NlaIII	CATG	5 cut(s)	247, 477, 541, 555, 949
NlaIV	GGNNCC	5 cut(s)	451, 642, 665, 840, 883
NmuCI	GTSAC	1 cut(s)	719
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	477
PagI	TCATGA	1 cut(s)	537
PaqCI	CACCTGC	1 cut(s)	800
PciI	ACATGT	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	871
PflFI	GACNNNGTC	1 cut(s)	755
PkrI	GCNGC	3 cut(s)	416, 470, 1054
PleI	GAGTC	6 cut(s)	235, 318, 505, 650, 683, 1041
PpsI	GAGTC	6 cut(s)	235, 318, 505, 650, 683, 1041
PscI	ACATGT	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	342
Psp6I	CCWGG	3 cut(s)	327, 445, 715
PspEI	GGTNACC	1 cut(s)	719
PspGI	CCWGG	3 cut(s)	327, 445, 715
PspN4I	GGNNCC	5 cut(s)	451, 642, 665, 840, 883
PstNI	CAGNNNCTG	1 cut(s)	755
PsyI	GACNNNGTC	1 cut(s)	755
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	3 cut(s)	193, 788, 883
RsaNI	GTAC	3 cut(s)	192, 787, 882
RseI	CAYNNNNRTG	2 cut(s)	59, 463
SaqAI	TTAA	6 cut(s)	20, 65, 174, 671, 834, 932
SatI	GCNGC	3 cut(s)	415, 469, 1053
Sau3AI	GATC	4 cut(s)	140, 217, 627, 955
SchI	GAGTC	6 cut(s)	236, 319, 505, 650, 684, 1042
ScrFI	CCNGG	5 cut(s)	75, 76, 329, 447, 717
SduI	GDGCHC	2 cut(s)	548, 1001
SfaNI	GCATC	3 cut(s)	455, 467, 802
SmaI	CCCGGG	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	59, 463
Sse9I	AATT	4 cut(s)	17, 89, 171, 396
SsiI	CCGC	8 cut(s)	249, 285, 317, 417, 555, 625, 703, 967
SspI	AATATT	2 cut(s)	338, 819
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	5 cut(s)	73, 74, 327, 445, 715
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	786
TaiI	ACGT	2 cut(s)	545, 769
TaqI	TCGA	3 cut(s)	225, 313, 1020
TasI	AATT	4 cut(s)	17, 89, 171, 396
TatI	WGTACW	1 cut(s)	786
TfiI	GAWTC	1 cut(s)	871
Tru1I	TTAA	6 cut(s)	20, 65, 174, 671, 834, 932
Tru9I	TTAA	6 cut(s)	20, 65, 174, 671, 834, 932
TscAI	CASTG	1 cut(s)	1006
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	3 cut(s)	414, 468, 1052
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	3 cut(s)	147, 348, 699
TspGWI	ACGGA	1 cut(s)	504
TspMI	CCCGGG	1 cut(s)	74
TspRI	CASTG	1 cut(s)	1006
Tth111I	GACNNNGTC	1 cut(s)	755
XagI	CCTNNNNNAGG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	1 cut(s)	477
XmaI	CCCGGG	1 cut(s)	74
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.