Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008635

Physical Location & Seq

Genomic Coordinates Reverse (-)

41710764 .. 41714363

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGTTACCTATCCAAAGCTGCAGCTGCTGCTGCTGCTCTGTTTTTAACTCTGCTTCTGGTTTCCCACCAAACAAAAGCAGAGGATTTCAATTCCTTGTTCAACAATAACAATGCTACAAACTCAGACGAAGTAGTAGCTAGAAACCTTGCAGGAGTTACATGCAACTGGTTCAGAGGTTCATGGGTTTACGACGCTTCCCATTATCCTCCCTACGATTCCAACTGTCCCTTCATAGATCCAGAGTTCAACTGCCAAAAGTATGGCCGCCCCGATAAATCTTACCTCAAATATCGATGGCAGCCCTTTTCTTGTTCACTGCCCAGGTTTAATGGATTGAATATGTTACAGAAATGGAGGGGGAAGAAGATTATGTTTGTGGGTGATTCACTGAGTTTGAACCAGTGGCAATCCCTAACATGTATGCTTCATTCTTGGGTACCAAATTCCAAGTACATTTTCACCCCATTAAGAAATGGCATAGCGTCGGTCACATTCCAGGACTATGGTGTTCAGATACTACTATACCACACAACGTACCTGGTGGATCTTGACAGCGGGAAGGTTGGAAGAGTCTTGAAGCTCGACTCCATCAGGGGCGGTAACGCCTGGAAAGGCATGGACGTCCTGATCTTCGACACGTGGCATTGGTGGACTCACACCGGAAGAACCCAACCATGGGACTATATACAAGATGGGGGTAGATTGTACAAGGATATGAACCGTCTGGTGGCTTTTTACAAAGGACTAACCACTTGGGGTAGATGGATTGATCGGAATGTTAATCCTTCCAAAACCAAGGTCTTCTTCCAAGGCATCTCTCCAATTCATTACGAGGGCAAGGATTGGAGTCAACCATCAAGGTCATGCAAAGGTGAAACACAACCATACTCAGGCAGAAGCTACCCAGCAGGGATACCCCAAGCATGGGTAGTTGTTAACAAAGTGTTGAGTAGGATTAAGAAACCAGTTTATCTTCTTGACATTACATCCCTGTCACAACTGCGTAAAGAAGCACACCCTTCTGTTTATAGCGGCGAGCATTCCGGCACAGACTGCAGCCATTGGTGTCTTCCGGGGCTGCCGGATACTTGGAATGACTTGCTATATGGGGCTCTATTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

375

Amino Acids

42.88

Weight (kDa)

9.16

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	54 - 106	6.3e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	107 - 370	3.5e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22360 AT4G39960 AT4G39960
fragaria_vesca	FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510
malus_domestica	MD09G1219300.v1.1 MD17G1202800.v1.1
prunus_persica	Prupe.3G078100_v2.0.a1 Prupe.3G078100_v2.0.a1
pyrus_communis	pycom17g20670
rosa_chinensis	RchiOBHm_Chr2g0136911
rosa_laevigata	RLG00000019588
rosa_multiflora	Rmu_ssc0000071.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107880
rosa_rugosa	Rorug02G0335200
rosa_samantha	Rh2AG385200 Rh2BG392300 Rh2CG372500 Rh2DG408500
rosa_wichuraiana	Rw2G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	627
Acc65I	GGTACC	1 cut(s)	439
AccB1I	GGYRCC	1 cut(s)	439
AciI	CCGC	4 cut(s)	268, 558, 600, 1035
AclWI	GGATC	2 cut(s)	233, 555
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	445
AcvI	CACGTG	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	624
AfaI	GTAC	4 cut(s)	441, 455, 539, 710
AfiI	CCNNNNNNNGG	6 cut(s)	678, 679, 730, 893, 927, 928
AflIII	ACRYGT	2 cut(s)	419, 639
AgsI	TTSAA	6 cut(s)	91, 103, 250, 340, 400, 580
AjnI	CCWGG	4 cut(s)	323, 498, 540, 608
AjuI	GAANNNNNNNTTGG	6 cut(s)	215, 247, 443, 475, 791, 823
AluBI	AGCT	5 cut(s)	20, 26, 140, 583, 903
AluI	AGCT	5 cut(s)	20, 26, 140, 583, 903
AlwI	GGATC	2 cut(s)	233, 555
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	9 cut(s)	20, 23, 26, 29, 32, 35, 301, 1059, 1081
ApoI	RAATTY	1 cut(s)	445
ArsI	GACNNNNNNTTYG	2 cut(s)	786, 818
Asp718I	GGTACC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	1077
AsuHPI	GGTGA	3 cut(s)	395, 454, 887
BanI	GGYRCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	1117
BbrPI	CACGTG	1 cut(s)	642
BbsI	GAAGAC	2 cut(s)	796, 1064
BbvI	GCAGC	9 cut(s)	7, 13, 16, 19, 22, 35, 313, 1068, 1071
BccI	CCATC	5 cut(s)	291, 599, 689, 759, 865
BciT130I	CCWGG	4 cut(s)	325, 500, 542, 610
BciVI	GTATCC	2 cut(s)	909, 1081
BcnI	CCSGG	1 cut(s)	1077
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	2 cut(s)	21, 1057
BfuI	GTATCC	2 cut(s)	909, 1081
Bme1390I	CCNGG	5 cut(s)	325, 500, 542, 610, 1077
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	5 cut(s)	325, 500, 542, 610, 1077
BmsI	GCATC	1 cut(s)	825
BpiI	GAAGAC	2 cut(s)	796, 1064
BpuMI	CCSGG	1 cut(s)	1077
Bsa29I	ATCGAT	1 cut(s)	295
BsaAI	YACGTR	1 cut(s)	642
BsaHI	GRCGYC	1 cut(s)	624
BsaJI	CCNNGG	5 cut(s)	323, 677, 798, 811, 1076
BsaWI	WCCGGW	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	6 cut(s)	678, 679, 730, 893, 927, 928
Bse1I	ACTGG	3 cut(s)	173, 403, 968
BseBI	CCWGG	4 cut(s)	325, 500, 542, 610
BseCI	ATCGAT	1 cut(s)	295
BseDI	CCNNGG	5 cut(s)	323, 677, 798, 811, 1076
BseGI	GGATG	1 cut(s)	989
BseLI	CCNNNNNNNGG	6 cut(s)	678, 679, 730, 893, 927, 928
BseMII	CTCAG	3 cut(s)	138, 383, 906
BseNI	ACTGG	3 cut(s)	173, 403, 968
BseXI	GCAGC	9 cut(s)	7, 13, 16, 19, 22, 35, 313, 1068, 1071
BseYI	CCCAGC	1 cut(s)	907
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	295
BsiSI	CCGG	4 cut(s)	663, 1047, 1076, 1085
BslFI	GGGAC	2 cut(s)	213, 695
BslI	CCNNNNNNNGG	6 cut(s)	678, 679, 730, 893, 927, 928
BsmFI	GGGAC	2 cut(s)	213, 695
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	1117
Bsp1407I	TGTACA	1 cut(s)	708
Bsp143I	GATC	4 cut(s)	238, 547, 630, 772
Bsp19I	CCATGG	1 cut(s)	677
BspACI	CCGC	4 cut(s)	268, 558, 600, 1035
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	3 cut(s)	137, 384, 905
BspDI	ATCGAT	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	441
BspMAI	CTGCAG	2 cut(s)	25, 1061
BspPI	GGATC	2 cut(s)	233, 555
BspT107I	GGYRCC	1 cut(s)	439
BsrGI	TGTACA	1 cut(s)	708
BsrI	ACTGG	3 cut(s)	173, 403, 968
BssECI	CCNNGG	5 cut(s)	323, 677, 798, 811, 1076
BssMI	GATC	4 cut(s)	238, 547, 630, 772
BssNI	GRCGYC	1 cut(s)	624
BssT1I	CCWWGG	3 cut(s)	677, 798, 811
Bst2UI	CCWGG	4 cut(s)	325, 500, 542, 610
Bst4CI	ACNGT	2 cut(s)	227, 725
Bst6I	CTCTTC	1 cut(s)	565
BstACI	GRCGYC	1 cut(s)	624
BstAPI	GCANNNNNTGC	2 cut(s)	29, 1056
BstAUI	TGTACA	1 cut(s)	708
BstBAI	YACGTR	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	1040
BstDEI	CTNAG	3 cut(s)	124, 392, 892
BstDSI	CCRYGG	1 cut(s)	677
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	989
BstKTI	GATC	4 cut(s)	241, 550, 633, 775
BstMBI	GATC	4 cut(s)	238, 547, 630, 772
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 29, 32, 35, 1056
BstNI	CCWGG	4 cut(s)	325, 500, 542, 610
BstNSI	RCATGY	2 cut(s)	165, 423
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	5 cut(s)	323, 498, 540, 608, 1075
BstSFI	CTRYAG	2 cut(s)	21, 1057
BstV1I	GCAGC	9 cut(s)	7, 13, 16, 19, 22, 35, 313, 1068, 1071
BstV2I	GAAGAC	2 cut(s)	796, 1064
BstX2I	RGATCY	2 cut(s)	238, 547
BstXI	CCANNNNNNTGG	2 cut(s)	263, 506
BstYI	RGATCY	2 cut(s)	238, 547
Bsu15I	ATCGAT	1 cut(s)	295
BsuI	GTATCC	2 cut(s)	909, 1081
BsuRI	GGCC	1 cut(s)	267
BsuTUI	ATCGAT	1 cut(s)	295
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	1 cut(s)	989
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	3 cut(s)	317, 389, 410
Cac8I	GCNNGC	1 cut(s)	1040
CaiI	CAGNNNCTG	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	295
CseI	GACGC	2 cut(s)	203, 474
CsiI	ACCWGGT	1 cut(s)	540
Csp6I	GTAC	4 cut(s)	440, 454, 538, 709
CviAII	CATG	7 cut(s)	162, 183, 420, 619, 678, 867, 927
CviQI	GTAC	4 cut(s)	440, 454, 538, 709
DdeI	CTNAG	3 cut(s)	124, 392, 892
DpnI	GATC	4 cut(s)	240, 549, 632, 774
DpnII	GATC	4 cut(s)	238, 547, 630, 772
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco130I	CCWWGG	3 cut(s)	677, 798, 811
Eco24I	GRGCYC	1 cut(s)	1117
Eco72I	CACGTG	1 cut(s)	642
Eco91I	GGTNACC	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	4 cut(s)	323, 498, 540, 608
EcoT14I	CCWWGG	3 cut(s)	677, 798, 811
EcoT38I	GRGCYC	1 cut(s)	1117
ErhI	CCWWGG	3 cut(s)	677, 798, 811
FaeI	CATG	7 cut(s)	165, 186, 423, 622, 681, 870, 930
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	2 cut(s)	213, 695
FatI	CATG	7 cut(s)	161, 182, 419, 618, 677, 866, 926
FauI	CCCGC	1 cut(s)	551
FokI	GGATG	1 cut(s)	976
FriOI	GRGCYC	1 cut(s)	1117
FspBI	CTAG	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	911
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	4 cut(s)	663, 1047, 1076, 1085
HgaI	GACGC	2 cut(s)	203, 474
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	7 cut(s)	165, 186, 423, 622, 681, 870, 930
HincII	GTYRAC	2 cut(s)	854, 940
HindII	GTYRAC	2 cut(s)	854, 940
HinfI	GANTC	6 cut(s)	218, 386, 573, 587, 655, 850
HpaI	GTTAAC	1 cut(s)	940
HpaII	CCGG	4 cut(s)	663, 1047, 1076, 1085
HphI	GGTGA	3 cut(s)	395, 454, 887
Hpy166II	GTNNAC	5 cut(s)	190, 317, 654, 854, 940
Hpy188I	TCNGA	4 cut(s)	127, 176, 516, 777
Hpy188III	TCNNGA	5 cut(s)	242, 551, 577, 628, 980
Hpy8I	GTNNAC	5 cut(s)	190, 317, 654, 854, 940
Hpy99I	CGWCG	2 cut(s)	197, 490
HpyAV	CCTTC	4 cut(s)	241, 556, 798, 1032
HpyCH4III	ACNGT	2 cut(s)	227, 725
HpyCH4IV	ACGT	3 cut(s)	536, 624, 641
HpyCH4V	TGCA	5 cut(s)	23, 152, 165, 870, 1059
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 29, 32, 35, 1056
HpyF3I	CTNAG	3 cut(s)	124, 392, 892
HpySE526I	ACGT	3 cut(s)	536, 624, 641
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	7 cut(s)	165, 186, 423, 622, 681, 870, 930
KpnI	GGTACC	1 cut(s)	443
KspAI	GTTAAC	1 cut(s)	940
Kzo9I	GATC	4 cut(s)	238, 547, 630, 772
Lsp1109I	GCAGC	9 cut(s)	7, 13, 16, 19, 22, 35, 313, 1068, 1071
LweI	GCATC	1 cut(s)	825
MabI	ACCWGGT	1 cut(s)	540
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	3 cut(s)	536, 624, 641
MaeIII	GTNAC	6 cut(s)	5, 157, 345, 490, 602, 996
MalI	GATC	4 cut(s)	240, 549, 632, 774
MboI	GATC	4 cut(s)	238, 547, 630, 772
MboII	GAAGA	9 cut(s)	376, 379, 582, 625, 678, 796, 799, 968, 1064
MflI	RGATCY	2 cut(s)	238, 547
MhlI	GDGCHC	1 cut(s)	1117
MluCI	AATT	3 cut(s)	91, 445, 825
MlyI	GAGTC	4 cut(s)	581, 582, 649, 859
MmeI	TCCRAC	2 cut(s)	246, 547
MnlI	CCTC	6 cut(s)	76, 170, 219, 296, 351, 829
MseI	TTAA	6 cut(s)	47, 330, 470, 783, 939, 960
MspA1I	CMGCKG	2 cut(s)	26, 558
MspI	CCGG	4 cut(s)	663, 1047, 1076, 1085
MspR9I	CCNGG	5 cut(s)	325, 500, 542, 610, 1077
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	4 cut(s)	325, 500, 542, 610
MwoI	GCNNNNNNNGC	5 cut(s)	26, 29, 32, 35, 1056
NciI	CCSGG	1 cut(s)	1077
NcoI	CCATGG	1 cut(s)	677
NdeII	GATC	4 cut(s)	238, 547, 630, 772
NlaIII	CATG	7 cut(s)	165, 186, 423, 622, 681, 870, 930
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	2 cut(s)	490, 996
NspI	RCATGY	2 cut(s)	165, 423
PciI	ACATGT	1 cut(s)	419
PctI	GAATGC	1 cut(s)	1042
PfeI	GAWTC	2 cut(s)	218, 386
PfoI	TCCNGGA	1 cut(s)	498
PleI	GAGTC	4 cut(s)	581, 581, 649, 858
PmaCI	CACGTG	1 cut(s)	642
PmlI	CACGTG	1 cut(s)	642
PpsI	GAGTC	4 cut(s)	581, 581, 649, 858
Ppu21I	YACGTR	1 cut(s)	642
PscI	ACATGT	1 cut(s)	419
Psp6I	CCWGG	4 cut(s)	323, 498, 540, 608
PspCI	CACGTG	1 cut(s)	642
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	907
PspGI	CCWGG	4 cut(s)	323, 498, 540, 608
PspN4I	GGNNCC	1 cut(s)	441
PstI	CTGCAG	2 cut(s)	25, 1061
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	238, 547
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	4 cut(s)	441, 455, 539, 710
RsaNI	GTAC	4 cut(s)	440, 454, 538, 709
SaqAI	TTAA	6 cut(s)	47, 330, 470, 783, 939, 960
Sau3AI	GATC	4 cut(s)	238, 547, 630, 772
SchI	GAGTC	4 cut(s)	581, 582, 649, 859
ScrFI	CCNGG	5 cut(s)	325, 500, 542, 610, 1077
SduI	GDGCHC	1 cut(s)	1117
SexAI	ACCWGGT	1 cut(s)	540
SfaNI	GCATC	1 cut(s)	825
SfcI	CTRYAG	2 cut(s)	21, 1057
Sse9I	AATT	3 cut(s)	91, 445, 825
SsiI	CCGC	4 cut(s)	268, 558, 600, 1035
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	5 cut(s)	323, 498, 540, 608, 1075
StyI	CCWWGG	3 cut(s)	677, 798, 811
TaaI	ACNGT	2 cut(s)	227, 725
TaiI	ACGT	3 cut(s)	539, 627, 644
TaqI	TCGA	3 cut(s)	295, 585, 636
TaqII	GACCGA	1 cut(s)	478
TasI	AATT	3 cut(s)	91, 445, 825
TatI	WGTACW	2 cut(s)	453, 708
TauI	GCSGC	2 cut(s)	270, 1038
TfiI	GAWTC	2 cut(s)	218, 386
Tru1I	TTAA	6 cut(s)	47, 330, 470, 783, 939, 960
Tru9I	TTAA	6 cut(s)	47, 330, 470, 783, 939, 960
TscAI	CASTG	3 cut(s)	324, 396, 410
TseFI	GTSAC	2 cut(s)	490, 996
TseI	GCWGC	9 cut(s)	20, 23, 26, 29, 32, 35, 301, 1059, 1081
Tsp45I	GTSAC	2 cut(s)	490, 996
TspDTI	ATGAA	5 cut(s)	171, 223, 419, 734, 818
TspRI	CASTG	3 cut(s)	324, 396, 410
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	2 cut(s)	165, 423
XspI	CTAG	1 cut(s)	141
ZraI	GACGTC	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.