Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008635

Physical Location & Seq

Genomic Coordinates Reverse (-)

31906022 .. 31912723

Gene Structure 6702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGTCCAGGGGATTTCAGCAATCCATTTGACCTGTTTGAGTCACTGTTCGAGGGCATGGGAGGTATGGGGTCCAGAGGTGGTGCTGGTTCTAGGAATAGAGCGGTTGATGGCCAGGACGAGTATTATAGTCTTGTCTTGAACTTCAAAGAAGCAGTTTTTGGTGTTGAAAAAGAGATTGAAATAAGTCGATTGGAGACCTGTGGAACTTGCAACGGTTCAGGTGCTAAAGCAGGAACCAAGCCCTCCAGATGCAGCACATGTGGTGGGCAAGGGCAGGTTGTTCAATCAGCAAGGACTCCTTTGGGTGTCTTCCAGCAAGTAATGACTTGCTCTTCCTGTGGCGGAACTGGGGAAATATCCACCCCCTGCAACACTTGCTCTGGGGATGGTCGTGTGAGGAGGACAAAGCGAATCAGTCTGAAAGTTCCAGCTGGTGTGGATGTAGGCAGCCGTTTAAGAGTTCGAAATGAAGGCAATGCTGGAAAGCGAGGCGGGTCTCCCGGTGACCTATTTGTTATTATAGAAGTTATCCCAGACCCTGTCCTCAAACGCGATGATACCAACATTATGTACTCCTGCAAGGTGTCCTATATTGATGCAATTTTGGGGACTACAATTAAGGTTCCAACAGTTGATGGCATGGTTGATTTGAAGATTCCAGCAGGGACTCAACCAAACACGACCCTTGTGATGGCAAAGAAAGGTGTTCCCCTCTTAAACAAAAGCAACATGAGAGGTGATCAGCTGGTGCGAGTGCAGGTTGAAATCCCAAAGAGATTAAGCAGTGATGAAAAGAAGCTCATCGAGGAACTTGCGAATCTGAGCAAGGGAAAGGCTGCAAGCAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

284

Amino Acids

30.17

Weight (kDa)

9.14

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	43 - 258	1.7e-45	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	68 - 131	2.9e-15	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22360 AT4G39960 AT4G39960
fragaria_vesca	FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510
malus_domestica	MD09G1219300.v1.1 MD17G1202800.v1.1
prunus_persica	Prupe.3G078100_v2.0.a1 Prupe.3G078100_v2.0.a1
pyrus_communis	pycom17g20670
rosa_chinensis	RchiOBHm_Chr2g0136911
rosa_laevigata	RLG00000019588
rosa_multiflora	Rmu_ssc0000071.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107880
rosa_rugosa	Rorug02G0335200
rosa_samantha	Rh2AG385200 Rh2BG392300 Rh2CG372500 Rh2DG408500
rosa_wichuraiana	Rw2G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	268, 751
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	555
AciI	CCGC	3 cut(s)	104, 345, 495
AcoI	YGGCCR	1 cut(s)	112
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	1 cut(s)	694
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	7 cut(s)	142, 148, 170, 182, 287, 655, 767
AjnI	CCWGG	2 cut(s)	7, 114
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AluBI	AGCT	3 cut(s)	434, 748, 802
AluI	AGCT	3 cut(s)	434, 748, 802
Alw26I	GTCTC	2 cut(s)	191, 504
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	255, 450, 839
AspS9I	GGNCC	2 cut(s)	5, 72
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	518, 752
AsuII	TTCGAA	1 cut(s)	466
AvaII	GGWCC	2 cut(s)	5, 72
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	267, 462, 826
BccI	CCATC	4 cut(s)	104, 383, 632, 688
BceAI	ACGGC	1 cut(s)	438
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	2 cut(s)	9, 116
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	191, 504
BfaI	CTAG	1 cut(s)	93
BfuAI	ACCTGC	2 cut(s)	268, 751
BisI	GCNGC	3 cut(s)	256, 451, 840
BlsI	GCNGC	3 cut(s)	257, 452, 841
Bme1390I	CCNGG	3 cut(s)	9, 116, 504
Bme18I	GGWCC	2 cut(s)	5, 72
BmgT120I	GGNCC	2 cut(s)	5, 72
BmiI	GGNNCC	4 cut(s)	6, 73, 238, 627
BmrFI	CCNGG	3 cut(s)	9, 116, 504
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	242, 589
BmuI	ACTGGG	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	466
BpuMI	CCSGG	1 cut(s)	504
BsaI	GGTCTC	2 cut(s)	191, 504
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	2 cut(s)	9, 116
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	394, 448
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	815
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	415
BseXI	GCAGC	3 cut(s)	267, 462, 826
BsgI	GTGCAG	1 cut(s)	779
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	625, 682
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	2 cut(s)	191, 504
BsmFI	GGGAC	2 cut(s)	625, 682
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	2 cut(s)	191, 504
Bsp119I	TTCGAA	1 cut(s)	466
Bsp143I	GATC	1 cut(s)	742
BspACI	CCGC	3 cut(s)	104, 345, 495
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	816
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	4 cut(s)	6, 73, 238, 627
BspMI	ACCTGC	2 cut(s)	268, 751
BspQI	GCTCTTC	1 cut(s)	340
BspT104I	TTCGAA	1 cut(s)	466
BspTNI	GGTCTC	2 cut(s)	191, 504
BsrBI	CCGCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	742
Bst2UI	CCWGG	2 cut(s)	9, 116
Bst4CI	ACNGT	3 cut(s)	48, 218, 634
Bst6I	CTCTTC	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	1 cut(s)	824
BstEII	GGTNACC	1 cut(s)	506
BstF5I	GGATG	2 cut(s)	394, 448
BstFNI	CGCG	1 cut(s)	555
BstKTI	GATC	1 cut(s)	745
BstMAI	GTCTC	2 cut(s)	191, 504
BstMBI	GATC	1 cut(s)	742
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	2 cut(s)	9, 116
BstNSI	RCATGY	1 cut(s)	264
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	3 cut(s)	7, 114, 502
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	267, 462, 826
BstV2I	GAAGAC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	2 cut(s)	394, 448
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	2 cut(s)	44, 793
BveI	ACCTGC	2 cut(s)	268, 751
Cac8I	GCNNGC	1 cut(s)	844
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	5, 72
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	4 cut(s)	58, 261, 643, 733
CviJI	RGCY	7 cut(s)	114, 244, 434, 453, 748, 802, 839
CviKI_1	RGCY	7 cut(s)	114, 244, 434, 453, 748, 802, 839
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	1 cut(s)	824
DpnI	GATC	1 cut(s)	744
DpnII	GATC	1 cut(s)	742
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	360
Eco31I	GGTCTC	2 cut(s)	191, 504
Eco47I	GGWCC	2 cut(s)	5, 72
Eco91I	GGTNACC	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	7, 114
FaeI	CATG	4 cut(s)	61, 264, 646, 736
FaiI	YATR	9 cut(s)	59, 68, 129, 262, 524, 572, 594, 644, 734
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	2 cut(s)	625, 682
FatI	CATG	4 cut(s)	57, 260, 642, 732
FauI	CCCGC	1 cut(s)	488
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	256, 451, 840
FokI	GGATG	2 cut(s)	401, 455
Fsp4HI	GCNGC	3 cut(s)	256, 451, 840
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	3 cut(s)	256, 451, 840
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	504
Hin1II	CATG	4 cut(s)	61, 264, 646, 736
HinfI	GANTC	6 cut(s)	41, 298, 414, 658, 670, 820
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	2 cut(s)	518, 752
Hpy188I	TCNGA	2 cut(s)	423, 825
Hpy188III	TCNNGA	3 cut(s)	75, 139, 249
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	3 cut(s)	48, 218, 634
HpyCH4V	TGCA	7 cut(s)	213, 255, 372, 582, 602, 760, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	1 cut(s)	824
Hsp92II	CATG	4 cut(s)	61, 264, 646, 736
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	1 cut(s)	742
LguI	GCTCTTC	1 cut(s)	340
Lsp1109I	GCAGC	3 cut(s)	267, 462, 826
LweI	GCATC	2 cut(s)	242, 589
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	42, 506
MalI	GATC	1 cut(s)	744
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	742
MboII	GAAGA	3 cut(s)	304, 327, 667
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	2 cut(s)	603, 618
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	3 cut(s)	50, 292, 664
MmeI	TCCRAC	1 cut(s)	653
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	4 cut(s)	458, 621, 719, 782
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	2 cut(s)	434, 748
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	3 cut(s)	9, 116, 504
MvaI	CCWGG	2 cut(s)	9, 116
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	1 cut(s)	378
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	1 cut(s)	742
NlaIII	CATG	4 cut(s)	61, 264, 646, 736
NlaIV	GGNNCC	4 cut(s)	6, 73, 238, 627
NmuCI	GTSAC	2 cut(s)	42, 506
NspI	RCATGY	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	466
PciI	ACATGT	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	340
PfeI	GAWTC	3 cut(s)	414, 658, 820
PflFI	GACNNNGTC	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	257, 452, 841
PleI	GAGTC	3 cut(s)	49, 292, 664
PpsI	GAGTC	3 cut(s)	49, 292, 664
PscI	ACATGT	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	7, 114
PspEI	GGTNACC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	7, 114
PspN4I	GGNNCC	4 cut(s)	6, 73, 238, 627
PspPI	GGNCC	2 cut(s)	5, 72
PstNI	CAGNNNCTG	1 cut(s)	542
PsyI	GACNNNGTC	1 cut(s)	542
PvuII	CAGCTG	2 cut(s)	434, 748
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SapI	GCTCTTC	1 cut(s)	340
SaqAI	TTAA	4 cut(s)	458, 621, 719, 782
SatI	GCNGC	3 cut(s)	256, 451, 840
Sau3AI	GATC	1 cut(s)	742
Sau96I	GGNCC	2 cut(s)	5, 72
SchI	GAGTC	3 cut(s)	50, 292, 664
ScrFI	CCNGG	3 cut(s)	9, 116, 504
SfaNI	GCATC	2 cut(s)	242, 589
SfuI	TTCGAA	1 cut(s)	466
SinI	GGWCC	2 cut(s)	5, 72
Sse9I	AATT	2 cut(s)	603, 618
SsiI	CCGC	3 cut(s)	104, 345, 495
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	3 cut(s)	7, 114, 502
TaaI	ACNGT	3 cut(s)	48, 218, 634
TaqI	TCGA	4 cut(s)	51, 190, 466, 807
TasI	AATT	2 cut(s)	603, 618
TatI	WGTACW	1 cut(s)	573
TfiI	GAWTC	3 cut(s)	414, 658, 820
Tru1I	TTAA	4 cut(s)	458, 621, 719, 782
Tru9I	TTAA	4 cut(s)	458, 621, 719, 782
TscAI	CASTG	2 cut(s)	51, 793
TseFI	GTSAC	2 cut(s)	42, 506
TseI	GCWGC	3 cut(s)	255, 450, 839
Tsp45I	GTSAC	2 cut(s)	42, 506
TspDTI	ATGAA	2 cut(s)	486, 807
TspRI	CASTG	2 cut(s)	51, 793
Tth111I	GACNNNGTC	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	5, 72
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.