Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008635

Physical Location & Seq

Genomic Coordinates Reverse (-)

5790388 .. 5797539

Gene Structure 7152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G078100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCAATAATACCTTCTGGAAGTACATGGGTTGCTCAATGGGGTATTCGTCCTCAGACTATGCTAAGGCCCTGTGCCATGAATAAGATGCTCACATCCCAATGCTGTGTTACAAGCAAAATAGGCTATTTGGGGGCACCGAGTTCAAGCTTCTTCTCTCGGGATTCCTTGAATGCTCTATTCTGTGCAGGCCCATCTCAAACTTCACATCGCAGTAGGGGAGCGAGATTCATAGTTAGAGCAGATTCTGATTTTTATTCTGTTCTTGGGGTCTCAAGAAATGCGAGTAAATCAGAAATCAAAAGTGCTTACCGGAAGCTTGCAAGAAGTTTTCACCCAGATGTAAACAAAGAACCAGGGGCAGAAACAAAATTCAAGGAAATTAGCAATGCATATGAGGTCTTGTCTGATGATGAAAAACGATCATTATATGACAAATATGGAGAGGCTGGACTTAAAGGTGCTGGTATGGGTACTGGGGATTTCAGCAATCCGTTTGATCTGTTTGAATCACTATTTGAGGGCATGGGCGGTATGGGTGGGATGGGCGGAATGGGTGGAATGGGGGGAAGAGGTTCTAGGAGTCGAGCGGTTGATGGACAAGACGAATATTATAATCTTGTCTTGAACTTCAAGGAAGCAGTTTTTGGGGTCGAAAAGGAGATTGAGATTAGCCGGTTGGAGAGCTGCGGGACTTGCAATGGTTCAGGTGCTAAACCAGGCACCAAGCCATCCAGATGCAGCACATGTGGTGGGCAAGGTCAGGTTGTTCAATCAGCAAGGACTCCTTTAGGTGTCTTCCAGCAGGTCATGACATGCTCTTCATGTGGTGGGTCTGGGGAAACATCCATCCCCTGCAACACTTGCTCTGGGGATAGTCGGGTGAGGAGGACGAAGCGGATCAGTCTTAAAGTTCCAGCTGGTGTGGACTCTGGAAGCCGTTTAAGAGTCCGAAATGAAGGTAATGCTGGAAGGCGGGGCGGGTCTCCTGGTGACCTATTTGTTATTATAGAAGTTATCCCAGACCCTGTCCTCAAACGGGATGATACCAACATTTTGTACACCTGCAAGGTGTCGTATATTGATGCAATTTTGGGGACTACAATTAAGGTTCCAACAGTTGACGGCATGGTTGATTTGAAGATTCCAGCTGGGACTCAACCAAACACGACCCTTGTGATGGCCAAGAAAGGTGTTCCTCTTTTAAACAAGAGCAACATGAGAGGTGATCAGCTGGTCCGTGTGCAGGTTGAAATCCCAAAGAGATTGAGCAATGATGAGAAGAAGCTCATCGAGGAACTTGCGAGTCTAAGCAAGGGCAAGGCCACAAGCCGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

447

Amino Acids

47.85

Weight (kDa)

9.34

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22360 AT4G39960 AT4G39960
fragaria_vesca	FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510 FvH4_6g30510
malus_domestica	MD09G1219300.v1.1 MD17G1202800.v1.1
prunus_persica	Prupe.3G078100_v2.0.a1 Prupe.3G078100_v2.0.a1
pyrus_communis	pycom17g20670
rosa_chinensis	RchiOBHm_Chr2g0136911
rosa_laevigata	RLG00000019588
rosa_multiflora	Rmu_ssc0000071.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107880
rosa_rugosa	Rorug02G0335200
rosa_samantha	Rh2AG385200 Rh2BG392300 Rh2CG372500 Rh2DG408500
rosa_wichuraiana	Rw2G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AarI	CACCTGC	1 cut(s)	1073
Acc36I	ACCTGC	3 cut(s)	796, 1073, 1237
AccB1I	GGYRCC	2 cut(s)	136, 722
AccBSI	CCGCTC	1 cut(s)	590
AciI	CCGC	7 cut(s)	531, 549, 590, 690, 898, 976, 981
AclWI	GGATC	1 cut(s)	908
AcoI	YGGCCR	1 cut(s)	1182
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	3 cut(s)	25, 475, 1061
AfiI	CCNNNNNNNGG	4 cut(s)	1039, 1180, 1246, 1332
AflIII	ACRYGT	1 cut(s)	746
AgsI	TTSAA	9 cut(s)	147, 172, 376, 509, 628, 634, 773, 1141, 1253
AjnI	CCWGG	3 cut(s)	355, 718, 988
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	7 cut(s)	150, 319, 687, 920, 1151, 1234, 1288
AluI	AGCT	7 cut(s)	150, 319, 687, 920, 1151, 1234, 1288
Alw26I	GTCTC	2 cut(s)	277, 990
AlwI	GGATC	1 cut(s)	908
AlwNI	CAGNNNCTG	2 cut(s)	248, 1028
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	4 cut(s)	68, 190, 1182, 1323
ApeKI	GCWGC	2 cut(s)	687, 741
ApoI	RAATTY	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	574
AspS9I	GGNCC	3 cut(s)	69, 191, 1237
AsuHPI	GGTGA	4 cut(s)	326, 895, 1004, 1238
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	1237
BaeGI	GKGCMC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	1184
BanI	GGYRCC	2 cut(s)	136, 722
BbsI	GAAGAC	1 cut(s)	790
BbvI	GCAGC	2 cut(s)	674, 753
BccI	CCATC	6 cut(s)	202, 538, 590, 739, 857, 1174
BceAI	ACGGC	2 cut(s)	924, 1141
BcgI	CGANNNNNNTGC	2 cut(s)	1283, 1317
BciT130I	CCWGG	3 cut(s)	357, 720, 990
BclI	TGATCA	1 cut(s)	1228
BcoDI	GTCTC	2 cut(s)	277, 990
BfaI	CTAG	1 cut(s)	579
BfuAI	ACCTGC	3 cut(s)	796, 1073, 1237
BisI	GCNGC	2 cut(s)	688, 742
BlsI	GCNGC	2 cut(s)	689, 743
Bme1390I	CCNGG	3 cut(s)	357, 720, 990
Bme18I	GGWCC	1 cut(s)	1237
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	69, 191, 1237
BmiI	GGNNCC	3 cut(s)	138, 724, 1113
BmrFI	CCNGG	3 cut(s)	357, 720, 990
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	3 cut(s)	78, 728, 1075
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	790
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	259
BsaI	GGTCTC	2 cut(s)	277, 990
BsaJI	CCNNGG	1 cut(s)	356
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	4 cut(s)	1039, 1180, 1246, 1332
Bse118I	RCCGGY	1 cut(s)	675
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	3 cut(s)	394, 706, 1279
BseBI	CCWGG	3 cut(s)	357, 720, 990
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	6 cut(s)	95, 549, 731, 845, 849, 1048
BseLI	CCNNNNNNNGG	4 cut(s)	1039, 1180, 1246, 1332
BseMI	GCAATG	3 cut(s)	394, 706, 1279
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	901
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	674, 753
BseYI	CCCAGC	1 cut(s)	1151
BsgI	GTGCAG	2 cut(s)	207, 1265
BshFI	GGCC	4 cut(s)	70, 192, 1184, 1325
BshNI	GGYRCC	2 cut(s)	136, 722
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	313, 676, 1333
BslFI	GGGAC	3 cut(s)	706, 1111, 1168
BslI	CCNNNNNNNGG	4 cut(s)	1039, 1180, 1246, 1332
BsmAI	GTCTC	2 cut(s)	277, 990
BsmFI	GGGAC	3 cut(s)	706, 1111, 1168
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	4 cut(s)	70, 192, 1184, 1325
Bso31I	GGTCTC	2 cut(s)	277, 990
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	1059
Bsp143I	GATC	4 cut(s)	422, 499, 900, 1228
BspACI	CCGC	7 cut(s)	531, 549, 590, 690, 898, 976, 981
BspANI	GGCC	4 cut(s)	70, 192, 1184, 1325
BspCNI	CTCAG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	3 cut(s)	138, 724, 1113
BspMI	ACCTGC	3 cut(s)	796, 1073, 1237
BspPI	GGATC	1 cut(s)	908
BspQI	GCTCTTC	1 cut(s)	826
BspT107I	GGYRCC	2 cut(s)	136, 722
BspTNI	GGTCTC	2 cut(s)	277, 990
BsrBI	CCGCTC	1 cut(s)	590
BsrDI	GCAATG	3 cut(s)	394, 706, 1279
BsrFI	RCCGGY	1 cut(s)	675
BsrGI	TGTACA	1 cut(s)	1059
BsrI	ACTGG	1 cut(s)	481
BssAI	RCCGGY	1 cut(s)	675
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	4 cut(s)	422, 499, 900, 1228
Bst2UI	CCWGG	3 cut(s)	357, 720, 990
Bst4CI	ACNGT	1 cut(s)	1120
Bst6I	CTCTTC	2 cut(s)	565, 826
BstAPI	GCANNNNNTGC	1 cut(s)	864
BstAUI	TGTACA	1 cut(s)	1059
BstC8I	GCNNGC	2 cut(s)	190, 321
BstDEI	CTNAG	3 cut(s)	54, 65, 1310
BstEII	GGTNACC	1 cut(s)	992
BstF5I	GGATG	6 cut(s)	95, 549, 731, 845, 849, 1048
BstKTI	GATC	4 cut(s)	425, 502, 903, 1231
BstMAI	GTCTC	2 cut(s)	277, 990
BstMBI	GATC	4 cut(s)	422, 499, 900, 1228
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 696, 864
BstNI	CCWGG	3 cut(s)	357, 720, 990
BstNSI	RCATGY	2 cut(s)	750, 819
BstPI	GGTNACC	1 cut(s)	992
BstSCI	CCNGG	3 cut(s)	355, 718, 988
BstSLI	GKGCMC	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	674, 753
BstV2I	GAAGAC	1 cut(s)	790
BsuRI	GGCC	4 cut(s)	70, 192, 1184, 1325
BtgZI	GCGATG	1 cut(s)	194
BtsCI	GGATG	6 cut(s)	95, 549, 731, 845, 849, 1048
BveI	ACCTGC	3 cut(s)	796, 1073, 1237
Cac8I	GCNNGC	2 cut(s)	190, 321
CaiI	CAGNNNCTG	2 cut(s)	248, 1028
CciI	TCATGA	1 cut(s)	810
Cfr10I	RCCGGY	1 cut(s)	675
Cfr13I	GGNCC	3 cut(s)	69, 191, 1237
Csp6I	GTAC	3 cut(s)	24, 474, 1060
CviAII	CATG	9 cut(s)	27, 79, 526, 747, 811, 816, 825, 1129, 1219
CviQI	GTAC	3 cut(s)	24, 474, 1060
DdeI	CTNAG	3 cut(s)	54, 65, 1310
DpnI	GATC	4 cut(s)	424, 501, 902, 1230
DpnII	GATC	4 cut(s)	422, 499, 900, 1228
DraI	TTTAAA	1 cut(s)	1206
EaeI	YGGCCR	1 cut(s)	1182
Eam1104I	CTCTTC	2 cut(s)	565, 826
EarI	CTCTTC	2 cut(s)	565, 826
EciI	GGCGGA	1 cut(s)	564
Eco31I	GGTCTC	2 cut(s)	277, 990
Eco47I	GGWCC	1 cut(s)	1237
Eco88I	CYCGRG	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	992
EcoO109I	RGGNCCY	1 cut(s)	69
EcoO65I	GGTNACC	1 cut(s)	992
EcoRII	CCWGG	3 cut(s)	355, 718, 988
EcoT22I	ATGCAT	1 cut(s)	394
FaeI	CATG	9 cut(s)	30, 82, 529, 750, 814, 819, 828, 1132, 1222
FalI	AAGNNNNNCTT	2 cut(s)	772, 804
FaqI	GGGAC	3 cut(s)	706, 1111, 1168
FatI	CATG	9 cut(s)	26, 78, 525, 746, 810, 815, 824, 1128, 1218
FauI	CCCGC	3 cut(s)	683, 969, 974
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	1228
Fnu4HI	GCNGC	2 cut(s)	688, 742
FokI	GGATG	6 cut(s)	82, 556, 718, 832, 836, 1055
Fsp4HI	GCNGC	2 cut(s)	688, 742
FspBI	CTAG	1 cut(s)	579
GluI	GCNGC	2 cut(s)	688, 742
GsaI	CCCAGC	1 cut(s)	1155
HaeIII	GGCC	4 cut(s)	70, 192, 1184, 1325
HapII	CCGG	3 cut(s)	313, 676, 1333
Hin1II	CATG	9 cut(s)	30, 82, 529, 750, 814, 819, 828, 1132, 1222
HincII	GTYRAC	1 cut(s)	1123
HindII	GTYRAC	1 cut(s)	1123
HindIII	AAGCTT	2 cut(s)	148, 317
HpaII	CCGG	3 cut(s)	313, 676, 1333
HphI	GGTGA	4 cut(s)	326, 895, 1004, 1238
Hpy166II	GTNNAC	4 cut(s)	346, 928, 1062, 1123
Hpy188I	TCNGA	5 cut(s)	57, 250, 295, 409, 953
Hpy188III	TCNNGA	7 cut(s)	18, 161, 276, 625, 735, 811, 933
Hpy8I	GTNNAC	4 cut(s)	346, 928, 1062, 1123
HpyAV	CCTTC	3 cut(s)	24, 953, 966
HpyCH4III	ACNGT	1 cut(s)	1120
HpyCH4V	TGCA	9 cut(s)	188, 323, 392, 699, 741, 858, 1068, 1088, 1246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 696, 864
HpyF3I	CTNAG	3 cut(s)	54, 65, 1310
Hsp92II	CATG	9 cut(s)	30, 82, 529, 750, 814, 819, 828, 1132, 1222
Ksp22I	TGATCA	1 cut(s)	1228
Kzo9I	GATC	4 cut(s)	422, 499, 900, 1228
LguI	GCTCTTC	1 cut(s)	826
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	2 cut(s)	674, 753
LweI	GCATC	3 cut(s)	78, 728, 1075
MaeI	CTAG	1 cut(s)	579
MaeIII	GTNAC	2 cut(s)	109, 992
MalI	GATC	4 cut(s)	424, 501, 902, 1230
MbiI	CCGCTC	1 cut(s)	590
MboI	GATC	4 cut(s)	422, 499, 900, 1228
MboII	GAAGA	6 cut(s)	145, 582, 790, 813, 1153, 1294
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	1184
MluCI	AATT	4 cut(s)	371, 381, 1089, 1104
MluNI	TGGCCA	1 cut(s)	1184
MlyI	GAGTC	6 cut(s)	592, 778, 923, 957, 1150, 1315
MmeI	TCCRAC	2 cut(s)	660, 1139
Mox20I	TGGCCA	1 cut(s)	1184
Mph1103I	ATGCAT	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	574
MscI	TGGCCA	1 cut(s)	1184
MseI	TTAA	5 cut(s)	456, 909, 944, 1107, 1205
MslI	CAYNNNNRTG	3 cut(s)	100, 339, 736
Msp20I	TGGCCA	1 cut(s)	1184
MspA1I	CMGCKG	3 cut(s)	920, 1151, 1234
MspI	CCGG	3 cut(s)	313, 676, 1333
MspR9I	CCNGG	3 cut(s)	357, 720, 990
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	3 cut(s)	357, 720, 990
MwoI	GCNNNNNNNGC	3 cut(s)	123, 696, 864
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	4 cut(s)	422, 499, 900, 1228
NlaIII	CATG	9 cut(s)	30, 82, 529, 750, 814, 819, 828, 1132, 1222
NlaIV	GGNNCC	3 cut(s)	138, 724, 1113
NmuCI	GTSAC	1 cut(s)	992
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	2 cut(s)	750, 819
PagI	TCATGA	1 cut(s)	810
PaqCI	CACCTGC	1 cut(s)	1073
PciI	ACATGT	1 cut(s)	746
PciSI	GCTCTTC	1 cut(s)	826
PctI	GAATGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	574
PfeI	GAWTC	5 cut(s)	164, 228, 245, 509, 1144
PflFI	GACNNNGTC	1 cut(s)	1028
PkrI	GCNGC	2 cut(s)	689, 743
PleI	GAGTC	6 cut(s)	591, 778, 923, 956, 1150, 1314
PpsI	GAGTC	6 cut(s)	591, 778, 923, 956, 1150, 1314
PscI	ACATGT	1 cut(s)	746
PsiI	TTATAA	1 cut(s)	615
Psp6I	CCWGG	3 cut(s)	355, 718, 988
PspEI	GGTNACC	1 cut(s)	992
PspFI	CCCAGC	1 cut(s)	1151
PspGI	CCWGG	3 cut(s)	355, 718, 988
PspN4I	GGNNCC	3 cut(s)	138, 724, 1113
PspPI	GGNCC	3 cut(s)	69, 191, 1237
PstNI	CAGNNNCTG	2 cut(s)	248, 1028
PsyI	GACNNNGTC	1 cut(s)	1028
PvuII	CAGCTG	3 cut(s)	920, 1151, 1234
RsaI	GTAC	3 cut(s)	25, 475, 1061
RsaNI	GTAC	3 cut(s)	24, 474, 1060
RseI	CAYNNNNRTG	3 cut(s)	100, 339, 736
SapI	GCTCTTC	1 cut(s)	826
SaqAI	TTAA	5 cut(s)	456, 909, 944, 1107, 1205
SatI	GCNGC	2 cut(s)	688, 742
Sau3AI	GATC	4 cut(s)	422, 499, 900, 1228
Sau96I	GGNCC	3 cut(s)	69, 191, 1237
SchI	GAGTC	6 cut(s)	592, 778, 923, 957, 1150, 1315
ScrFI	CCNGG	3 cut(s)	357, 720, 990
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	78, 728, 1075
SinI	GGWCC	1 cut(s)	1237
SmiMI	CAYNNNNRTG	3 cut(s)	100, 339, 736
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	4 cut(s)	371, 381, 1089, 1104
SsiI	CCGC	7 cut(s)	531, 549, 590, 690, 898, 976, 981
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	3 cut(s)	355, 718, 988
TaaI	ACNGT	1 cut(s)	1120
TaqI	TCGA	3 cut(s)	586, 654, 1293
TasI	AATT	4 cut(s)	371, 381, 1089, 1104
TatI	WGTACW	2 cut(s)	23, 1059
TfiI	GAWTC	5 cut(s)	164, 228, 245, 509, 1144
Tru1I	TTAA	5 cut(s)	456, 909, 944, 1107, 1205
Tru9I	TTAA	5 cut(s)	456, 909, 944, 1107, 1205
TseFI	GTSAC	1 cut(s)	992
TseI	GCWGC	2 cut(s)	687, 741
Tsp45I	GTSAC	1 cut(s)	992
TspDTI	ATGAA	5 cut(s)	95, 220, 429, 813, 972
TspGWI	ACGGA	2 cut(s)	483, 1229
Tth111I	GACNNNGTC	1 cut(s)	1028
VpaK11BI	GGWCC	1 cut(s)	1237
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	2 cut(s)	750, 819
XmnI	GAANNNNTTC	1 cut(s)	574
XspI	CTAG	1 cut(s)	579
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.