AT4G40080

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015501
Physical Location & Seq
Forward (+)
18579314 .. 18580717
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G40080.1

Sequence Viewer

Length: 1098 bp
ATGGGAAGAATAACAAGTTTTGCAGATCTAATAGGTAGAATCAAAGACAAAGCTTCTCAAAGCAAAGCTGCTTTAGTATCATCAAACACTAAAAGCAAAACTCTCTCTTTCCATCTCTCTGTCCTCCGTGCCACTACTCATGACCCTTCAACGCCGCCGGGGAATCGTCACCTCGCCGTTATTCTCTCCGCCGGTACTGGCTCACGAGCCACCGCTTCTTCAGCTGTCGAATCCATAATGGAACGTCTTCACACCACCGGAGATGCTTGCGTAGCTCTCAAGTCTTTGATCATTATCCATCACATCGTCAAACACGGTCGTTTCATCCTCCAAGATCAGCTCTCTGTATTTCCAGCTTCCGGTGGTCGGAATTATCTGAAACTTTCTGCTTTTAGAGATGAGAAATCTCCTTTGATGTGGGAGCTTTCTTCTTGGGTCCGATGGTACGCTTTATATCTTGAGCATCTATTATCAACTTCAAGAATCATGGGATTTTTCATATCTTCAACATCGAGTACAATTCACAAAGAGGAATACGAAGAAATGGTTTCTTCTCTTACCAACTCTGATCTGCTTCGTGAGATCGATGCTCTCGTTGGTCTACTAGAAGAAGCATGTAAAATTCCGGATCTACCCTTCTCCGGTGGGAAATCCCTCGCAGACAAAATCACTCAGTTGGTAGGAGAAGACTACGTGTCTTCGATCAACGAGCTTTACACGAGATTCAACGAGTTTAAAGAACGATCCAACACTTTGAGCTTTGGAGATACGATCGAGCTTGTCTGTGCTTTGAAGCGGCTCGAGAGTTGTAAAGAGAGGTTGTCTGAAATCTGCCATGGGAATTGGAAGAGAGGTTGGATTGATGGGTTCTGGGGTTTGGTTCTTGAGGTCAAGGGTATTATTGGTAATTTAGAGGATAATTATGGGCAGATTGAGAAATCGATTGTTGGGTTTGGGAAGAGGGATAAAGGATACGAATCGGCTCGGTTTACTGATCGGTTAATTATCGGTTATAGTAATCCTGTTCGGTTTTCTTCGGGTAGATTTTCGAATGTTGATCGGTTTAATTTTCCGGTTTCTGGTCGAGTGTTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

365

Amino Acids

40.7

Weight (kDa)

8.63

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 40 - 205 7.3e-16 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40080
fragaria_vesca FvH4_1g20100
malus_domestica MD15G1316600.v1.1
prunus_persica Prupe.6G195400_v2.0.a1
pyrus_communis pycom15g27940
rosa_chinensis RchiOBHm_Chr2g0112101
rosa_laevigata RLG00000017950
rosa_multiflora Rmu_sc0000360.1_g000002 Rmu_sc0001294.1_g000002
rosa_roxburghii Rroxscaffold_2G00131790
rosa_rugosa Rorug02G0178400
rosa_samantha Rh2AG230400 Rh2BG243600 Rh2CG234900 Rh2DG238400
rosa_wichuraiana Rw2G017850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 601
AccIII TCCGGA 1 cut(s) 625
AciI CCGC 4 cut(s) 155, 189, 213, 796
AclWI GGATC 2 cut(s) 636, 738
AcsI RAATTY 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 3 cut(s) 196, 446, 517
AfiI CCNNNNNNNGG 4 cut(s) 359, 366, 641, 1079
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 5 cut(s) 150, 480, 507, 727, 793
AhdI GACNNNNNGTC 1 cut(s) 694
AlwI GGATC 2 cut(s) 636, 738
Ama87I CYCGRG 1 cut(s) 800
Aor13HI TCCGGA 1 cut(s) 625
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 621
Asp700I GAANNNNTTC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 161
AsuII TTCGAA 1 cut(s) 1049
AvaI CYCGRG 1 cut(s) 800
AvaII GGWCC 1 cut(s) 436
BauI CACGAG 2 cut(s) 204, 718
BbsI GAAGAC 3 cut(s) 239, 690, 693
BbvI GCAGC 1 cut(s) 55
BccI CCATC 4 cut(s) 120, 306, 435, 857
BceAI ACGGC 1 cut(s) 161
BciVI GTATCC 1 cut(s) 965
BclI TGATCA 1 cut(s) 288
BcnI CCSGG 1 cut(s) 159
BfaI CTAG 1 cut(s) 605
BfuI GTATCC 1 cut(s) 965
BglII AGATCT 1 cut(s) 25
BisI GCNGC 3 cut(s) 69, 155, 797
BlsI GCNGC 3 cut(s) 70, 156, 798
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 436
BmeRI GACNNNNNGTC 1 cut(s) 694
BmeT110I CYCGRG 1 cut(s) 800
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 3 cut(s) 253, 472, 577
BpiI GAAGAC 3 cut(s) 239, 690, 693
Bpu14I TTCGAA 1 cut(s) 1049
BpuEI CTTGAG 3 cut(s) 263, 479, 905
BpuMI CCSGG 1 cut(s) 159
Bsa29I ATCGAT 2 cut(s) 585, 941
BsaAI YACGTR 1 cut(s) 694
BsaBI GATNNNNATC 2 cut(s) 293, 976
BsaJI CCNNGG 2 cut(s) 158, 835
BsaWI WCCGGW 5 cut(s) 257, 359, 625, 641, 1072
Bsc4I CCNNNNNNNGG 4 cut(s) 359, 366, 641, 1079
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 202
Bse8I GATNNNNATC 2 cut(s) 293, 976
BseAI TCCGGA 1 cut(s) 625
BseCI ATCGAT 2 cut(s) 585, 941
BseDI CCNNGG 2 cut(s) 158, 835
BseGI GGATG 1 cut(s) 324
BseJI GATNNNNATC 2 cut(s) 293, 976
BseLI CCNNNNNNNGG 4 cut(s) 359, 366, 641, 1079
BseMII CTCAG 1 cut(s) 686
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 55
Bsh1285I CGRYCG 2 cut(s) 319, 774
BshVI ATCGAT 2 cut(s) 585, 941
BsiEI CGRYCG 2 cut(s) 319, 774
BsiHKCI CYCGRG 1 cut(s) 800
BsiSI CCGG 7 cut(s) 158, 192, 258, 360, 626, 642, 1073
BslI CCNNNNNNNGG 4 cut(s) 359, 366, 641, 1079
BsoBI CYCGRG 1 cut(s) 800
Bsp119I TTCGAA 1 cut(s) 1049
Bsp13I TCCGGA 1 cut(s) 625
Bsp19I CCATGG 1 cut(s) 835
BspACI CCGC 4 cut(s) 155, 189, 213, 796
BspCNI CTCAG 1 cut(s) 685
BspDI ATCGAT 2 cut(s) 585, 941
BspEI TCCGGA 1 cut(s) 625
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 437
BspPI GGATC 2 cut(s) 636, 738
BspT104I TTCGAA 1 cut(s) 1049
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 158, 835
BssSI CACGAG 2 cut(s) 204, 718
BssT1I CCWWGG 1 cut(s) 835
Bst2BI CACGAG 2 cut(s) 204, 718
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 842, 953
BstBAI YACGTR 1 cut(s) 694
BstBI TTCGAA 1 cut(s) 1049
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 672
BstDSI CCRYGG 1 cut(s) 835
BstF5I GGATG 1 cut(s) 324
BstMCI CGRYCG 2 cut(s) 319, 774
BstMWI GCNNNNNNNGC 2 cut(s) 221, 272
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 3 cut(s) 239, 690, 693
BstX2I RGATCY 2 cut(s) 25, 628
BstYI RGATCY 2 cut(s) 25, 628
Bsu15I ATCGAT 2 cut(s) 585, 941
BsuI GTATCC 1 cut(s) 965
BsuTUI ATCGAT 2 cut(s) 585, 941
BtgI CCRYGG 1 cut(s) 835
BtsCI GGATG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 268
CciI TCATGA 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 436
ClaI ATCGAT 2 cut(s) 585, 941
Csp6I GTAC 3 cut(s) 195, 445, 516
CviAII CATG 4 cut(s) 140, 487, 615, 836
CviQI GTAC 3 cut(s) 195, 445, 516
DdeI CTNAG 1 cut(s) 672
DraI TTTAAA 1 cut(s) 736
DriI GACNNNNNGTC 1 cut(s) 694
Eam1104I CTCTTC 2 cut(s) 842, 953
Eam1105I GACNNNNNGTC 1 cut(s) 694
EarI CTCTTC 2 cut(s) 842, 953
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 835
Eco47I GGWCC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 800
EcoT14I CCWWGG 1 cut(s) 835
ErhI CCWWGG 1 cut(s) 835
FaeI CATG 4 cut(s) 143, 490, 618, 839
FaiI YATR 9 cut(s) 141, 236, 454, 488, 500, 616, 837, 924, 1014
FatI CATG 4 cut(s) 139, 486, 614, 835
FbaI TGATCA 1 cut(s) 288
FblI GTMKAC 1 cut(s) 601
Fnu4HI GCNGC 3 cut(s) 69, 155, 797
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 69, 155, 797
FspBI CTAG 1 cut(s) 605
GluI GCNGC 3 cut(s) 69, 155, 797
HapII CCGG 7 cut(s) 158, 192, 258, 360, 626, 642, 1073
Hin1II CATG 4 cut(s) 143, 490, 618, 839
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 6 cut(s) 39, 163, 230, 483, 723, 977
HpaII CCGG 7 cut(s) 158, 192, 258, 360, 626, 642, 1073
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 602, 990
Hpy188I TCNGA 5 cut(s) 369, 378, 440, 568, 826
Hpy188III TCNNGA 8 cut(s) 140, 204, 458, 480, 578, 626, 802, 884
Hpy8I GTNNAC 2 cut(s) 602, 990
HpyAV CCTTC 2 cut(s) 156, 646
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 2 cut(s) 244, 693
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 272
HpyF3I CTNAG 1 cut(s) 672
HpySE526I ACGT 2 cut(s) 244, 693
Hsp92II CATG 4 cut(s) 143, 490, 618, 839
Kpn2I TCCGGA 1 cut(s) 625
Ksp22I TGATCA 1 cut(s) 288
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 3 cut(s) 253, 472, 577
MaeI CTAG 1 cut(s) 605
MaeII ACGT 2 cut(s) 244, 693
MaeIII GTNAC 1 cut(s) 167
MflI RGATCY 2 cut(s) 25, 628
MluCI AATT 8 cut(s) 370, 519, 621, 841, 907, 919, 1002, 1066
MmeI TCCRAC 3 cut(s) 347, 771, 836
MroI TCCGGA 1 cut(s) 625
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 3 cut(s) 735, 1001, 1065
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 7 cut(s) 158, 192, 258, 360, 626, 642, 1073
MspR9I CCNGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 221, 272
NciI CCSGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 835
NlaIII CATG 4 cut(s) 143, 490, 618, 839
NlaIV GGNNCC 1 cut(s) 437
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 1 cut(s) 618
NspV TTCGAA 1 cut(s) 1049
PaeR7I CTCGAG 1 cut(s) 800
PagI TCATGA 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 6 cut(s) 39, 163, 230, 483, 723, 977
PkrI GCNGC 3 cut(s) 70, 156, 798
Ple19I CGATCG 1 cut(s) 774
Ppu21I YACGTR 1 cut(s) 694
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 1 cut(s) 436
PsuI RGATCY 2 cut(s) 25, 628
PvuI CGATCG 1 cut(s) 774
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 3 cut(s) 196, 446, 517
RsaNI GTAC 3 cut(s) 195, 445, 516
SaqAI TTAA 3 cut(s) 735, 1001, 1065
SatI GCNGC 3 cut(s) 69, 155, 797
Sau96I GGNCC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 159
SfaNI GCATC 3 cut(s) 253, 472, 577
Sfr274I CTCGAG 1 cut(s) 800
SfuI TTCGAA 1 cut(s) 1049
SinI GGWCC 1 cut(s) 436
SlaI CTCGAG 1 cut(s) 800
SmlI CTYRAG 4 cut(s) 278, 458, 800, 884
SmoI CTYRAG 4 cut(s) 278, 458, 800, 884
Sse9I AATT 8 cut(s) 370, 519, 621, 841, 907, 919, 1002, 1066
SsiI CCGC 4 cut(s) 155, 189, 213, 796
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 2 cut(s) 247, 696
TaqI TCGA 9 cut(s) 228, 512, 585, 701, 774, 801, 941, 1049, 1084
TasI AATT 8 cut(s) 370, 519, 621, 841, 907, 919, 1002, 1066
TatI WGTACW 1 cut(s) 515
TauI GCSGC 2 cut(s) 157, 799
TfiI GAWTC 6 cut(s) 39, 163, 230, 483, 723, 977
Tru1I TTAA 3 cut(s) 735, 1001, 1065
Tru9I TTAA 3 cut(s) 735, 1001, 1065
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 313, 487
TspGWI ACGGA 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 1 cut(s) 621
XceI RCATGY 1 cut(s) 618
XhoI CTCGAG 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.