FvH4_1g20100

clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015501
Physical Location & Seq
Reverse (-)
12289657 .. 12290957
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20100.t1

Sequence Viewer

Length: 1011 bp
ATGGGACGGCAAACAAAGCTCAAAGACCTCCTAATGGGGGCAATCAAAGACAAGGCCTCCCAGAGCAAAGCAGCAATCCTCTCCAAACTCAACACCGATGCCTGCTCTCCTCTATCATCTCAATCTCTACACCTCACCCTCCTCCGCGCCACCACCCACGACCCTTTCTCACCTCCACCCGCCAAACACCTCGCCACGCTCCTCTCCTTCGGCCACAGCTCACGCGCCACCGCCTCCGCCGCCATCGAAGCCCTCATGGACCGTCTACAGACCACCCAAAACTCCTCCGTCGCACTCAAGTGCCTCATCGCCGTTCACCACATCGTCAAGTACGGCTCCTTCATCCTCCAGGACCAGCTCTCCGTCTTTCCCTCCGCCGGCGGCAGAAACTACCTTAAACTCTCCAACTTCCGGGACAACTCCAGTCCTATTTCCTGGGACCTCTCGTCCTGGGTCAGATGGTACGGACAGTACGTAGAAAACCTCATCATTACTTCTCGGTACTTAGGTTTTTTCTTAGGATCGAACTCATGCATTGCCGACAGAGACAGACAAGAAGAGAGAATCTCGGCGCTCATGAATACCGACCTGGTCAGGGAGACCGAGTCTCTGGTGAGTCTAATGGAAGAGATTTGCCGGCGGCCTGAAAGTTTGAATGGTAACAGGTTGGTGGGTGAGATATTGGGTTTGGTAGGTCAAGACCAGATTGCCACCGTGAATGAGGTTTCGGTCCGAGTCAACGAGTTTGGCGAGAGACTGAGTTGCATGAGCTTCGGCGACTCGGTCGAGCTGTTGAGCGCGTTAAAGAGGTCGGAGGATTGCAAGGAGAGGGTTGGGAACGAGAAAGAGATCAAAGAGGGTGGAAAGCTGGTGGTGATGGCGGTGAGGAGAGACAGTGTGGGTGAGTCGGCTCGGTTTGGTGACCGAGTTTTAAAGTCGTCTGACTCGGTACGATTCTCGTCAGGAAGGTTGAAGGTGAGGTTCAATTTGCCCATGGAATCATGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

337

Amino Acids

37.14

Weight (kDa)

8.8

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 47 - 278 4.9e-15 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40080
fragaria_vesca FvH4_1g20100
malus_domestica MD15G1316600.v1.1
prunus_persica Prupe.6G195400_v2.0.a1
pyrus_communis pycom15g27940
rosa_chinensis RchiOBHm_Chr2g0112101
rosa_laevigata RLG00000017950
rosa_multiflora Rmu_sc0000360.1_g000002 Rmu_sc0001294.1_g000002
rosa_roxburghii Rroxscaffold_2G00131790
rosa_rugosa Rorug02G0178400
rosa_samantha Rh2AG230400 Rh2BG243600 Rh2CG234900 Rh2DG238400
rosa_wichuraiana Rw2G017850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 265
AccII CGCG 3 cut(s) 147, 225, 800
AciI CCGC 9 cut(s) 145, 180, 231, 237, 240, 375, 381, 640, 881
AclWI GGATC 1 cut(s) 529
AcoI YGGCCR 1 cut(s) 211
AfaI GTAC 5 cut(s) 332, 464, 473, 503, 951
AfiI CCNNNNNNNGG 5 cut(s) 34, 37, 377, 411, 595
AgsI TTSAA 3 cut(s) 655, 973, 985
AhdI GACNNNNNGTC 1 cut(s) 445
AjnI CCWGG 4 cut(s) 348, 434, 449, 588
AleI CACNNNNGTG 1 cut(s) 298
AluBI AGCT 6 cut(s) 19, 219, 358, 771, 790, 868
AluI AGCT 6 cut(s) 19, 219, 358, 771, 790, 868
Alw26I GTCTC 5 cut(s) 540, 593, 612, 748, 885
AlwI GGATC 1 cut(s) 529
AoxI GGCC 3 cut(s) 54, 211, 641
ApeKI GCWGC 1 cut(s) 71
AspLEI GCGC 4 cut(s) 149, 227, 574, 800
AspS9I GGNCC 4 cut(s) 259, 352, 439, 730
AsuC2I CCSGG 1 cut(s) 413
AvaII GGWCC 4 cut(s) 259, 352, 439, 730
BaeI ACNNNNGTAYC 2 cut(s) 493, 526
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BbvI GCAGC 1 cut(s) 83
BccI CCATC 3 cut(s) 251, 453, 871
BceAI ACGGC 3 cut(s) 23, 296, 349
BcgI CGANNNNNNTGC 2 cut(s) 754, 788
BciT130I CCWGG 4 cut(s) 350, 436, 451, 590
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 5 cut(s) 540, 593, 612, 748, 885
BfmI CTRYAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 575
BisI GCNGC 4 cut(s) 72, 240, 382, 641
BlsI GCNGC 4 cut(s) 73, 241, 383, 642
Bme1390I CCNGG 5 cut(s) 350, 413, 436, 451, 590
Bme18I GGWCC 4 cut(s) 259, 352, 439, 730
BmeRI GACNNNNNGTC 1 cut(s) 445
BmgT120I GGNCC 4 cut(s) 259, 352, 439, 730
BmiI GGNNCC 2 cut(s) 337, 440
BmrFI CCNGG 5 cut(s) 350, 413, 436, 451, 590
BmsI GCATC 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BpmI CTGGAG 2 cut(s) 332, 406
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 475
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 3 cut(s) 435, 450, 993
BsaXI ACNNNNNCTCC 8 cut(s) 41, 71, 344, 374, 590, 620, 880, 910
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 37, 377, 411, 595
Bse118I RCCGGY 2 cut(s) 377, 636
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 534
BseBI CCWGG 4 cut(s) 350, 436, 451, 590
BseDI CCNNGG 3 cut(s) 435, 450, 993
BseGI GGATG 1 cut(s) 342
BseLI CCNNNNNNNGG 5 cut(s) 34, 37, 377, 411, 595
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 749
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 5 cut(s) 99, 131, 191, 274, 901
BseXI GCAGC 1 cut(s) 83
Bsh1236I CGCG 3 cut(s) 147, 225, 800
Bsh1285I CGRYCG 1 cut(s) 786
BshFI GGCC 3 cut(s) 56, 213, 643
BsiEI CGRYCG 1 cut(s) 786
BsiSI CCGG 3 cut(s) 378, 412, 637
BslFI GGGAC 3 cut(s) 18, 428, 452
BslI CCNNNNNNNGG 5 cut(s) 34, 37, 377, 411, 595
BsmAI GTCTC 5 cut(s) 540, 593, 612, 748, 885
BsmFI GGGAC 3 cut(s) 18, 428, 452
BsnI GGCC 3 cut(s) 56, 213, 643
Bso31I GGTCTC 1 cut(s) 593
Bsp143I GATC 2 cut(s) 521, 849
Bsp19I CCATGG 1 cut(s) 993
BspACI CCGC 9 cut(s) 145, 180, 231, 237, 240, 375, 381, 640, 881
BspANI GGCC 3 cut(s) 56, 213, 643
BspCNI CTCAG 1 cut(s) 750
BspFNI CGCG 3 cut(s) 147, 225, 800
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 2 cut(s) 337, 440
BspPI GGATC 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 2 cut(s) 377, 636
BsrI ACTGG 1 cut(s) 423
BssAI RCCGGY 2 cut(s) 377, 636
BssECI CCNNGG 3 cut(s) 435, 450, 993
BssMI GATC 2 cut(s) 521, 849
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 4 cut(s) 350, 436, 451, 590
Bst4CI ACNGT 4 cut(s) 263, 471, 715, 896
Bst6I CTCTTC 2 cut(s) 552, 621
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 3 cut(s) 103, 379, 638
BstDEI CTNAG 3 cut(s) 505, 517, 758
BstDSI CCRYGG 1 cut(s) 993
BstEII GGTNACC 1 cut(s) 920
BstF5I GGATG 1 cut(s) 342
BstFNI CGCG 3 cut(s) 147, 225, 800
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 4 cut(s) 149, 227, 574, 800
BstKTI GATC 2 cut(s) 524, 852
BstMAI GTCTC 5 cut(s) 540, 593, 612, 748, 885
BstMBI GATC 2 cut(s) 521, 849
BstMCI CGRYCG 1 cut(s) 786
BstMWI GCNNNNNNNGC 3 cut(s) 16, 239, 248
BstNI CCWGG 4 cut(s) 350, 436, 451, 590
BstPI GGTNACC 1 cut(s) 920
BstSCI CCNGG 5 cut(s) 348, 411, 434, 449, 588
BstSFI CTRYAG 1 cut(s) 266
BstSNI TACGTA 1 cut(s) 475
BstUI CGCG 3 cut(s) 147, 225, 800
BstV1I GCAGC 1 cut(s) 83
BsuRI GGCC 3 cut(s) 56, 213, 643
BtgI CCRYGG 1 cut(s) 993
BtgZI GCGATG 1 cut(s) 292
BtsCI GGATG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 901
Cac8I GCNNGC 3 cut(s) 103, 379, 638
CciI TCATGA 1 cut(s) 576
CfoI GCGC 4 cut(s) 149, 227, 574, 800
Cfr10I RCCGGY 2 cut(s) 377, 636
Cfr13I GGNCC 4 cut(s) 259, 352, 439, 730
CpoI CGGWCCG 1 cut(s) 730
CsiI ACCWGGT 1 cut(s) 588
Csp6I GTAC 5 cut(s) 331, 463, 472, 502, 950
CspCI CAANNNNNGTGG 2 cut(s) 841, 876
CspI CGGWCCG 1 cut(s) 730
CviAII CATG 6 cut(s) 256, 531, 577, 766, 994, 1002
CviQI GTAC 5 cut(s) 331, 463, 472, 502, 950
DdeI CTNAG 3 cut(s) 505, 517, 758
DpnI GATC 2 cut(s) 523, 851
DpnII GATC 2 cut(s) 521, 849
DraI TTTAAA 1 cut(s) 933
DriI GACNNNNNGTC 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 552, 621
Eam1105I GACNNNNNGTC 1 cut(s) 445
EarI CTCTTC 2 cut(s) 552, 621
EciI GGCGGA 2 cut(s) 226, 364
Eco105I TACGTA 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 993
Eco147I AGGCCT 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 593
Eco47I GGWCC 4 cut(s) 259, 352, 439, 730
Eco91I GGTNACC 1 cut(s) 920
EcoO109I RGGNCCY 1 cut(s) 439
EcoO65I GGTNACC 1 cut(s) 920
EcoRII CCWGG 4 cut(s) 348, 434, 449, 588
EcoT14I CCWWGG 1 cut(s) 993
EcoT22I ATGCAT 1 cut(s) 536
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 6 cut(s) 259, 534, 580, 769, 997, 1005
FaiI YATR 6 cut(s) 257, 532, 578, 767, 995, 1003
FaqI GGGAC 3 cut(s) 18, 428, 452
FatI CATG 6 cut(s) 255, 530, 576, 765, 993, 1001
FauI CCCGC 1 cut(s) 187
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 4 cut(s) 72, 240, 382, 641
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 4 cut(s) 72, 240, 382, 641
GlaI GCGC 4 cut(s) 148, 226, 573, 799
GluI GCNGC 4 cut(s) 72, 240, 382, 641
GsuI CTGGAG 2 cut(s) 332, 406
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 3 cut(s) 56, 213, 643
HapII CCGG 3 cut(s) 378, 412, 637
HhaI GCGC 4 cut(s) 149, 227, 574, 800
Hin1II CATG 6 cut(s) 259, 534, 580, 769, 997, 1005
Hin6I GCGC 4 cut(s) 147, 225, 572, 798
HinP1I GCGC 4 cut(s) 147, 225, 572, 798
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HinfI GANTC 9 cut(s) 564, 605, 616, 735, 779, 905, 944, 954, 998
HpaII CCGG 3 cut(s) 378, 412, 637
Hpy166II GTNNAC 3 cut(s) 266, 316, 739
Hpy188I TCNGA 4 cut(s) 458, 734, 814, 943
Hpy188III TCNNGA 3 cut(s) 577, 698, 963
Hpy8I GTNNAC 3 cut(s) 266, 316, 739
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 4 cut(s) 217, 349, 960, 967
HpyCH4III ACNGT 4 cut(s) 263, 471, 715, 896
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 3 cut(s) 534, 765, 822
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 239, 248
HpyF3I CTNAG 3 cut(s) 505, 517, 758
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 6 cut(s) 259, 534, 580, 769, 997, 1005
HspAI GCGC 4 cut(s) 147, 225, 572, 798
KroI GCCGGC 2 cut(s) 377, 636
KroNI GCCGGC 2 cut(s) 379, 638
Kzo9I GATC 2 cut(s) 521, 849
LmnI GCTCC 2 cut(s) 204, 341
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 88
MabI ACCWGGT 1 cut(s) 588
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 2 cut(s) 659, 920
MalI GATC 2 cut(s) 523, 851
MboI GATC 2 cut(s) 521, 849
MboII GAAGA 2 cut(s) 569, 638
MluCI AATT 1 cut(s) 985
MlyI GAGTC 6 cut(s) 614, 625, 744, 773, 914, 938
MmeI TCCRAC 2 cut(s) 429, 792
Mph1103I ATGCAT 1 cut(s) 536
MreI CGCCGGCG 1 cut(s) 377
MroNI GCCGGC 2 cut(s) 377, 636
MseI TTAA 3 cut(s) 396, 803, 932
MslI CAYNNNNRTG 1 cut(s) 298
MspI CCGG 3 cut(s) 378, 412, 637
MspR9I CCNGG 5 cut(s) 350, 413, 436, 451, 590
MvaI CCWGG 4 cut(s) 350, 436, 451, 590
MvnI CGCG 3 cut(s) 147, 225, 800
MwoI GCNNNNNNNGC 3 cut(s) 16, 239, 248
NaeI GCCGGC 2 cut(s) 379, 638
NciI CCSGG 1 cut(s) 413
NcoI CCATGG 1 cut(s) 993
NdeII GATC 2 cut(s) 521, 849
NgoMIV GCCGGC 2 cut(s) 377, 636
NlaIII CATG 6 cut(s) 259, 534, 580, 769, 997, 1005
NlaIV GGNNCC 2 cut(s) 337, 440
NmeAIII GCCGAG 1 cut(s) 548
NmuCI GTSAC 1 cut(s) 920
NsiI ATGCAT 1 cut(s) 536
OliI CACNNNNGTG 1 cut(s) 298
PagI TCATGA 1 cut(s) 576
PceI AGGCCT 1 cut(s) 56
PcsI WCGNNNNNNNCGW 2 cut(s) 471, 747
PdiI GCCGGC 2 cut(s) 379, 638
PfeI GAWTC 3 cut(s) 564, 954, 998
PflFI GACNNNGTC 3 cut(s) 590, 604, 782
PfoI TCCNGGA 2 cut(s) 348, 411
PkrI GCNGC 4 cut(s) 73, 241, 383, 642
PleI GAGTC 6 cut(s) 613, 624, 743, 773, 913, 938
PpsI GAGTC 6 cut(s) 613, 624, 743, 773, 913, 938
Ppu21I YACGTR 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 4 cut(s) 348, 434, 449, 588
PspEI GGTNACC 1 cut(s) 920
PspGI CCWGG 4 cut(s) 348, 434, 449, 588
PspN4I GGNNCC 2 cut(s) 337, 440
PspPI GGNCC 4 cut(s) 259, 352, 439, 730
PspPPI RGGWCCY 1 cut(s) 439
PsyI GACNNNGTC 3 cut(s) 590, 604, 782
RsaI GTAC 5 cut(s) 332, 464, 473, 503, 951
RsaNI GTAC 5 cut(s) 331, 463, 472, 502, 950
RseI CAYNNNNRTG 1 cut(s) 298
Rsr2I CGGWCCG 1 cut(s) 730
RsrII CGGWCCG 1 cut(s) 730
SaqAI TTAA 3 cut(s) 396, 803, 932
SatI GCNGC 4 cut(s) 72, 240, 382, 641
Sau3AI GATC 2 cut(s) 521, 849
Sau96I GGNCC 4 cut(s) 259, 352, 439, 730
SchI GAGTC 6 cut(s) 614, 625, 744, 773, 914, 938
ScrFI CCNGG 5 cut(s) 350, 413, 436, 451, 590
SexAI ACCWGGT 1 cut(s) 588
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 266
SgrAI CRCCGGYG 1 cut(s) 377
SinI GGWCC 4 cut(s) 259, 352, 439, 730
SmiMI CAYNNNNRTG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SnaBI TACGTA 1 cut(s) 475
Sse9I AATT 1 cut(s) 985
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 9 cut(s) 145, 180, 231, 237, 240, 375, 381, 640, 881
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 5 cut(s) 348, 411, 434, 449, 588
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 4 cut(s) 263, 471, 715, 896
TaiI ACGT 1 cut(s) 477
TaqI TCGA 3 cut(s) 246, 524, 786
TaqII GACCGA 4 cut(s) 617, 718, 772, 939
TasI AATT 1 cut(s) 985
TauI GCSGC 3 cut(s) 242, 384, 643
TfiI GAWTC 3 cut(s) 564, 954, 998
Tru1I TTAA 3 cut(s) 396, 803, 932
Tru9I TTAA 3 cut(s) 396, 803, 932
TscAI CASTG 1 cut(s) 901
TseFI GTSAC 1 cut(s) 920
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 920
TspDTI ATGAA 2 cut(s) 331, 593
TspGWI ACGGA 3 cut(s) 277, 352, 480
TspRI CASTG 1 cut(s) 901
Tth111I GACNNNGTC 3 cut(s) 590, 604, 782
VpaK11BI GGWCC 4 cut(s) 259, 352, 439, 730
XmiI GTMKAC 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.