MD15G1316600.v1.1

clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015501
Physical Location & Seq
Reverse (-)
32574873 .. 32575934
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1316600.v1.1.491

Sequence Viewer

Length: 1062 bp
ATGGGAAAAACAAGAAAGATGAGAGACGTGATGGGGGCTATCAAAGACAAAGCCTCTCAAAGCAAAGCAGCCATCCTCTCCAAACTATCCGCCTCCGCCGCCTCCTCCTCCCCCTACTCTCTCCACCTCACCCTCCTCCGCGCCACAACCCATGACCCCTTTGCACCCCCACCCCAAAAACACCTCGCCAATCTCCTCTCCTTTGGCAACAGCTCACGCGCCACCGCCTCCGCCGCCGTCGAATCCCTCATGGACCGCCTCCAAACCACCCACGACTCAGCCGTCGCCATCAAGTGCCTTCTTGCCGTCCACCACGTGATCAAGTACGGCTCCTTCATCCTCCAGGACCAGCTCGCCGTCTACCCAGCCGCAGGAGGCAGAAACTACCTCAACCTCTCCAATTTCAGAGACGATTCTACCCCTTTAGCTTGGGAACTCTCCTCCTGGGTCCGATGGTACGCTCAGTACGTCGAGAACCTCCTTCTCACATCTCGGCTTCTGGGTTTCTTCCTCGGATCCAATTCCTGCACTGTGGATAAAGAGAAGGAGGACGACCGAGTCTCCGCCCTTATGAACGCCGAGTTGGTCCGAGAGACCGAGTTGTTGGTGAGTTTGATGGAAGAGATTTGCAGAAGGCCCGTGTCGTTGGATTTGGACGGGAACAGATTGATGATGGAGATTTTGGGTTTGGTGGGTGAGGACCAGATTTGTGCGATGAATGAAACTATAGTCCGAGTCAACGAGTTCGACGAGAGGCTGAGTTGTCTGAATTTATGCGACTCGGTCGAGTTGCTGAGTGCGTTGAAGCGGTCGGAGGAGTGCGAAGGGCGGCTTCTGGCGGTGCCGAATGTGAAGAGTGATCTGGTTAATGGGTTTTGGAGGCTGATTAAAGAGACGGTGGTGAAGGCTGCGAAGGTGAAGGAGGAGGAGGGGAACGGGAAGTTGGTGGTGGCCAAGAGAAGACATAGTTTGAGTGAGTCGGCTCGGTTTGGTGACCGAGATATCAGACCATCTGACTCGGTTCGATTCCCGTCGGGGAGACCTGTTTCATTTGGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

354

Amino Acids

39.15

Weight (kDa)

7.61

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 45 - 226 4.6e-15 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40080
fragaria_vesca FvH4_1g20100
malus_domestica MD15G1316600.v1.1
prunus_persica Prupe.6G195400_v2.0.a1
pyrus_communis pycom15g27940
rosa_chinensis RchiOBHm_Chr2g0112101
rosa_laevigata RLG00000017950
rosa_multiflora Rmu_sc0000360.1_g000002 Rmu_sc0001294.1_g000002
rosa_roxburghii Rroxscaffold_2G00131790
rosa_rugosa Rorug02G0178400
rosa_samantha Rh2AG230400 Rh2BG243600 Rh2CG234900 Rh2DG238400
rosa_wichuraiana Rw2G017850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 281, 557
AccB1I GGYRCC 1 cut(s) 841
AccI GTMKAC 1 cut(s) 360
AccII CGCG 2 cut(s) 141, 219
AclWI GGATC 2 cut(s) 510, 523
AcoI YGGCCR 1 cut(s) 951
AcsI RAATTY 1 cut(s) 769
AcvI CACGTG 1 cut(s) 316
AdeI CACNNNGTG 1 cut(s) 316
AfaI GTAC 3 cut(s) 326, 458, 467
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 1 cut(s) 805
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 2 cut(s) 342, 443
AjuI GAANNNNNNNTTGG 4 cut(s) 566, 598, 926, 958
AluBI AGCT 3 cut(s) 213, 352, 428
AluI AGCT 3 cut(s) 213, 352, 428
Alw26I GTCTC 6 cut(s) 18, 402, 565, 587, 887, 1033
AlwI GGATC 2 cut(s) 510, 523
AoxI GGCC 2 cut(s) 635, 951
ApeKI GCWGC 2 cut(s) 68, 908
ApoI RAATTY 1 cut(s) 769
AspLEI GCGC 2 cut(s) 143, 221
AspS9I GGNCC 6 cut(s) 253, 346, 448, 586, 636, 700
AsuHPI GGTGA 6 cut(s) 121, 619, 707, 913, 928, 1004
AvaII GGWCC 5 cut(s) 253, 346, 448, 586, 700
BalI TGGCCA 1 cut(s) 953
BamHI GGATCC 1 cut(s) 515
BanI GGYRCC 1 cut(s) 841
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BbrPI CACGTG 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 967
BbvI GCAGC 2 cut(s) 80, 895
BccI CCATC 7 cut(s) 25, 80, 296, 447, 610, 667, 1018
BceAI ACGGC 5 cut(s) 221, 266, 290, 341, 343
BciT130I CCWGG 2 cut(s) 344, 445
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 6 cut(s) 18, 402, 565, 587, 887, 1033
BfmI CTRYAG 1 cut(s) 726
BisI GCNGC 6 cut(s) 69, 99, 234, 369, 830, 909
BlsI GCNGC 6 cut(s) 70, 100, 235, 370, 831, 910
Bme1390I CCNGG 2 cut(s) 344, 445
Bme18I GGWCC 5 cut(s) 253, 346, 448, 586, 700
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 6 cut(s) 253, 346, 448, 586, 636, 700
BmiI GGNNCC 4 cut(s) 331, 449, 517, 843
BmrFI CCNGG 2 cut(s) 344, 445
BpiI GAAGAC 1 cut(s) 967
BpmI CTGGAG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 316
BsaI GGTCTC 2 cut(s) 587, 1033
BsaJI CCNNGG 2 cut(s) 444, 511
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 1 cut(s) 371
BseBI CCWGG 2 cut(s) 344, 445
BseDI CCNNGG 2 cut(s) 444, 511
BseGI GGATG 2 cut(s) 72, 336
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 4 cut(s) 291, 476, 749, 785
BseRI GAGGAG 8 cut(s) 94, 97, 125, 185, 430, 830, 938, 941
BseXI GCAGC 2 cut(s) 80, 895
BseYI CCCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 511
Bsh1236I CGCG 2 cut(s) 141, 219
Bsh1285I CGRYCG 3 cut(s) 556, 786, 812
BshFI GGCC 2 cut(s) 637, 953
BshNI GGYRCC 1 cut(s) 841
BsiEI CGRYCG 3 cut(s) 556, 786, 812
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 6 cut(s) 18, 402, 565, 587, 887, 1033
BsmBI CGTCTC 3 cut(s) 18, 402, 887
BsnI GGCC 2 cut(s) 637, 953
Bso31I GGTCTC 2 cut(s) 587, 1033
Bsp143I GATC 3 cut(s) 318, 515, 859
BspANI GGCC 2 cut(s) 637, 953
BspCNI CTCAG 4 cut(s) 290, 475, 750, 786
BspFNI CGCG 2 cut(s) 141, 219
BspLI GGNNCC 4 cut(s) 331, 449, 517, 843
BspPI GGATC 2 cut(s) 510, 523
BspT107I GGYRCC 1 cut(s) 841
BspTNI GGTCTC 2 cut(s) 587, 1033
BssECI CCNNGG 2 cut(s) 444, 511
BssMI GATC 3 cut(s) 318, 515, 859
Bst2UI CCWGG 2 cut(s) 344, 445
Bst4CI ACNGT 2 cut(s) 532, 898
Bst6I CTCTTC 2 cut(s) 615, 848
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 4 cut(s) 277, 462, 758, 794
BstEII GGTNACC 1 cut(s) 992
BstF5I GGATG 2 cut(s) 72, 336
BstFNI CGCG 2 cut(s) 141, 219
BstHHI GCGC 2 cut(s) 143, 221
BstKTI GATC 3 cut(s) 321, 518, 862
BstMAI GTCTC 6 cut(s) 18, 402, 565, 587, 887, 1033
BstMBI GATC 3 cut(s) 318, 515, 859
BstMCI CGRYCG 3 cut(s) 556, 786, 812
BstMWI GCNNNNNNNGC 2 cut(s) 98, 233
BstNI CCWGG 2 cut(s) 344, 445
BstPI GGTNACC 1 cut(s) 992
BstSCI CCNGG 2 cut(s) 342, 443
BstSFI CTRYAG 1 cut(s) 726
BstUI CGCG 2 cut(s) 141, 219
BstV1I GCAGC 2 cut(s) 80, 895
BstV2I GAAGAC 1 cut(s) 967
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BsuRI GGCC 2 cut(s) 637, 953
BtgZI GCGATG 1 cut(s) 728
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 2 cut(s) 72, 336
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 2 cut(s) 143, 221
Cfr13I GGNCC 6 cut(s) 253, 346, 448, 586, 636, 700
Csp6I GTAC 3 cut(s) 325, 457, 466
CviAII CATG 2 cut(s) 152, 250
CviQI GTAC 3 cut(s) 325, 457, 466
DdeI CTNAG 4 cut(s) 277, 462, 758, 794
DpnI GATC 3 cut(s) 320, 517, 861
DpnII GATC 3 cut(s) 318, 515, 859
DraIII CACNNNGTG 1 cut(s) 316
DrdI GACNNNNNNGTC 2 cut(s) 281, 557
DseDI GACNNNNNNGTC 2 cut(s) 281, 557
EaeI YGGCCR 1 cut(s) 951
Eam1104I CTCTTC 2 cut(s) 615, 848
EarI CTCTTC 2 cut(s) 615, 848
EciI GGCGGA 4 cut(s) 79, 85, 220, 553
Eco31I GGTCTC 2 cut(s) 587, 1033
Eco32I GATATC 1 cut(s) 1003
Eco47I GGWCC 5 cut(s) 253, 346, 448, 586, 700
Eco72I CACGTG 1 cut(s) 316
Eco91I GGTNACC 1 cut(s) 992
EcoO65I GGTNACC 1 cut(s) 992
EcoRII CCWGG 2 cut(s) 342, 443
EcoRV GATATC 1 cut(s) 1003
Esp3I CGTCTC 3 cut(s) 18, 402, 887
FaeI CATG 2 cut(s) 155, 253
FaiI YATR 6 cut(s) 153, 251, 572, 728, 775, 966
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FatI CATG 2 cut(s) 151, 249
FbaI TGATCA 1 cut(s) 318
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 6 cut(s) 69, 99, 234, 369, 830, 909
FokI GGATG 2 cut(s) 59, 323
Fsp4HI GCNGC 6 cut(s) 69, 99, 234, 369, 830, 909
GlaI GCGC 2 cut(s) 142, 220
GluI GCNGC 6 cut(s) 69, 99, 234, 369, 830, 909
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 2 cut(s) 637, 953
HhaI GCGC 2 cut(s) 143, 221
Hin1II CATG 2 cut(s) 155, 253
Hin6I GCGC 2 cut(s) 141, 219
HinP1I GCGC 2 cut(s) 141, 219
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HinfI GANTC 9 cut(s) 242, 275, 413, 558, 735, 779, 977, 1016, 1026
HphI GGTGA 6 cut(s) 121, 619, 707, 913, 928, 1004
Hpy166II GTNNAC 3 cut(s) 310, 361, 739
Hpy188I TCNGA 9 cut(s) 407, 452, 515, 590, 734, 768, 814, 1007, 1015
Hpy188III TCNNGA 1 cut(s) 472
Hpy8I GTNNAC 3 cut(s) 310, 361, 739
Hpy99I CGWCG 5 cut(s) 242, 287, 473, 752, 1036
HpyAV CCTTC 9 cut(s) 308, 343, 491, 538, 627, 818, 898, 907, 913
HpyCH4III ACNGT 2 cut(s) 532, 898
HpyCH4IV ACGT 3 cut(s) 27, 315, 468
HpyCH4V TGCA 3 cut(s) 164, 528, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 233
HpyF3I CTNAG 4 cut(s) 277, 462, 758, 794
HpySE526I ACGT 3 cut(s) 27, 315, 468
Hsp92II CATG 2 cut(s) 155, 253
HspAI GCGC 2 cut(s) 141, 219
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 3 cut(s) 318, 515, 859
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 2 cut(s) 80, 895
MaeII ACGT 3 cut(s) 27, 315, 468
MaeIII GTNAC 1 cut(s) 992
MalI GATC 3 cut(s) 320, 517, 861
MboI GATC 3 cut(s) 318, 515, 859
MboII GAAGA 4 cut(s) 499, 632, 865, 972
MflI RGATCY 1 cut(s) 515
MlsI TGGCCA 1 cut(s) 953
MluCI AATT 3 cut(s) 400, 520, 769
MluNI TGGCCA 1 cut(s) 953
MlyI GAGTC 6 cut(s) 269, 567, 744, 773, 986, 1010
MmeI TCCRAC 2 cut(s) 627, 792
Mox20I TGGCCA 1 cut(s) 953
MscI TGGCCA 1 cut(s) 953
MseI TTAA 2 cut(s) 867, 888
Msp20I TGGCCA 1 cut(s) 953
MspR9I CCNGG 2 cut(s) 344, 445
MvaI CCWGG 2 cut(s) 344, 445
MvnI CGCG 2 cut(s) 141, 219
MwoI GCNNNNNNNGC 2 cut(s) 98, 233
NdeII GATC 3 cut(s) 318, 515, 859
NlaIII CATG 2 cut(s) 155, 253
NlaIV GGNNCC 4 cut(s) 331, 449, 517, 843
NmeAIII GCCGAG 2 cut(s) 472, 604
NmuCI GTSAC 1 cut(s) 992
PcsI WCGNNNNNNNCGW 3 cut(s) 279, 465, 747
PfeI GAWTC 3 cut(s) 242, 413, 1026
PflFI GACNNNGTC 2 cut(s) 557, 782
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 6 cut(s) 70, 100, 235, 370, 831, 910
PleI GAGTC 6 cut(s) 269, 566, 743, 773, 985, 1010
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 6 cut(s) 269, 566, 743, 773, 985, 1010
Ppu21I YACGTR 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 342, 443
PspCI CACGTG 1 cut(s) 316
PspEI GGTNACC 1 cut(s) 992
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 2 cut(s) 342, 443
PspN4I GGNNCC 4 cut(s) 331, 449, 517, 843
PspPI GGNCC 6 cut(s) 253, 346, 448, 586, 636, 700
PsuI RGATCY 1 cut(s) 515
PsyI GACNNNGTC 2 cut(s) 557, 782
RsaI GTAC 3 cut(s) 326, 458, 467
RsaNI GTAC 3 cut(s) 325, 457, 466
SaqAI TTAA 2 cut(s) 867, 888
SatI GCNGC 6 cut(s) 69, 99, 234, 369, 830, 909
Sau3AI GATC 3 cut(s) 318, 515, 859
Sau96I GGNCC 6 cut(s) 253, 346, 448, 586, 636, 700
SchI GAGTC 6 cut(s) 269, 567, 744, 773, 986, 1010
ScrFI CCNGG 2 cut(s) 344, 445
SfcI CTRYAG 1 cut(s) 726
SinI GGWCC 5 cut(s) 253, 346, 448, 586, 700
Sse9I AATT 3 cut(s) 400, 520, 769
StyD4I CCNGG 2 cut(s) 342, 443
TaaI ACNGT 2 cut(s) 532, 898
TaiI ACGT 3 cut(s) 30, 318, 471
TaqI TCGA 5 cut(s) 240, 471, 747, 786, 1024
TaqII GACCGA 4 cut(s) 570, 611, 772, 1011
TasI AATT 3 cut(s) 400, 520, 769
TauI GCSGC 4 cut(s) 101, 236, 371, 832
TfiI GAWTC 3 cut(s) 242, 413, 1026
Tru1I TTAA 2 cut(s) 867, 888
Tru9I TTAA 2 cut(s) 867, 888
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 1 cut(s) 992
TseI GCWGC 2 cut(s) 68, 908
Tsp45I GTSAC 1 cut(s) 992
TspDTI ATGAA 5 cut(s) 325, 587, 731, 735, 1038
TspRI CASTG 1 cut(s) 535
Tth111I GACNNNGTC 2 cut(s) 557, 782
VpaK11BI GGWCC 5 cut(s) 253, 346, 448, 586, 700
XapI RAATTY 1 cut(s) 769
XmiI GTMKAC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.