RchiOBHm_Chr2g0112101

clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015501
Physical Location & Seq
Reverse (-)
23913599 .. 23914903
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48561

Sequence Viewer

Length: 1233 bp
ATGCGATTTGATTTCATTTTAGTGCTAGGTAGAAATGTAGAATGTGACAAGGCCCTCGCTCGTAATAATCAAACCCCACAACCCATAAAATTCAACTCAAACCCCCACCGACCTCCCTCTCTCTCTCTCTCTCTCTCAGTTCGATCGTATCCTCTTCTATCCAACTCCATGGGACGGAAAACAAAGATCAAAGACCTTCTAATGGGGGCAATCAAAGACAAAGCCTCTCAGAGCAAAGCAGCAATCCTCTCCACAATCAACACCGCTGCCAGCAGTACTCCTCAATCTCTCCACCTCGCCCTCCTCCGCGCCACCACCCACGACCCTTTCTCACCTCCACCCGCCAAACACCTTGCCGCGCTCCTCTCCTTCGGACACAGCTCGCGTGCCACCGCCTCCGCCGCCATCGAAGCCCTCATGGACCGCCTCCAAACCACCCAAAACTCCTCCGTCGCACTCAAGTGCCTCATCGCCGTTCACCACATCGTCAAGTACGGCTCCTTCATCCTCCAGGACCAGCTCTCCGTCTTCCCCTCCACTGGCGGCAGAAACTACCTTAAGCTCTCCAACTTCCGGGACAACTCTAGCCCCATTTCCTGGGACCTCTCGTCCTGGGTCAGATGGTACGGACAGTACATAGAAAACCTCATCATCACTTCCCGGTTCTTAGGTTTCTTCTTAGGATCGAACTCGTGCCTTGCCGAAAGAGACAGACAAGAAGAGAGAATCTCAGCGCACATGAATTCCGACCTGGTTAGGGAGACCGAGTCGCTGGTGAGTCTAATGGAAGAGATTTGCCGGCGGCCTGACTTTTCAAGTTTGAACGGTAACAGGTTGGTAGGCGAGATATTGGGTTTGGTGGGTCAGGACCAGATTGCCGCAATGAACGAGGTTTCGGTCCGAGTCAAGGAGTTTGATGAGAGACTGAGTTGCATGAGCTTTGGCGACTCGGTCGAGTTGCTGAGCACGTTAAAGAGGTCGGAGGATTGCAAGGAGAGGCTTCTGACAGTGTCGTCGGCGGTGAAGAGTGATTTGGTAGAGAGGTTTTGGGAGTTGATGAGAGAGATGAAGGGAAGGGTTAAGAAAGAGAAAGAGAAAGTGGGTGGTAAGTTGGTGGTGATGGCGGTGAGGAGAGACAGTGTGGGTGAGTCGGCTCGGTTTGATGACCGAGTTTTAAGGTCGTATGACTCGGTCCGATTCTCCTCAGGAAGGTTGAAGATTGTGGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

410

Amino Acids

45.88

Weight (kDa)

9.46

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 98 - 334 1.3e-15 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40080
fragaria_vesca FvH4_1g20100
malus_domestica MD15G1316600.v1.1
prunus_persica Prupe.6G195400_v2.0.a1
pyrus_communis pycom15g27940
rosa_chinensis RchiOBHm_Chr2g0112101
rosa_laevigata RLG00000017950
rosa_multiflora Rmu_sc0000360.1_g000002 Rmu_sc0001294.1_g000002
rosa_roxburghii Rroxscaffold_2G00131790
rosa_rugosa Rorug02G0178400
rosa_samantha Rh2AG230400 Rh2BG243600 Rh2CG234900 Rh2DG238400
rosa_wichuraiana Rw2G017850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1012
AccB7I CCANNNNNTGG 1 cut(s) 597
AccII CGCG 3 cut(s) 309, 359, 385
AclWI GGATC 1 cut(s) 691
AcsI RAATTY 2 cut(s) 89, 742
AfaI GTAC 4 cut(s) 277, 494, 626, 635
AfiI CCNNNNNNNGG 8 cut(s) 174, 202, 539, 573, 597, 757, 907, 1209
AflII CTTAAG 1 cut(s) 557
AgsI TTSAA 4 cut(s) 94, 816, 823, 1216
AhdI GACNNNNNGTC 1 cut(s) 607
AjnI CCWGG 4 cut(s) 510, 596, 611, 750
AjuI GAANNNNNNNTTGG 2 cut(s) 1016, 1048
AleI CACNNNNGTG 1 cut(s) 460
AluBI AGCT 4 cut(s) 381, 520, 562, 939
AluI AGCT 4 cut(s) 381, 520, 562, 939
Alw21I GWGCWC 1 cut(s) 968
Alw26I GTCTC 4 cut(s) 702, 755, 916, 1128
AlwI GGATC 1 cut(s) 691
AoxI GGCC 2 cut(s) 51, 803
ApeKI GCWGC 2 cut(s) 239, 266
ApoI RAATTY 2 cut(s) 89, 742
AspLEI GCGC 3 cut(s) 311, 361, 736
AspS9I GGNCC 7 cut(s) 52, 421, 514, 601, 868, 898, 1192
AsuC2I CCSGG 2 cut(s) 575, 661
AsuHPI GGTGA 7 cut(s) 324, 470, 787, 1033, 1129, 1138, 1157
AvaII GGWCC 6 cut(s) 421, 514, 601, 868, 898, 1192
AxyI CCTNAGG 1 cut(s) 1204
BarI GAAGNNNNNNTAC 2 cut(s) 485, 517
BauI CACGAG 1 cut(s) 691
BbsI GAAGAC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 968
BbvI GCAGC 2 cut(s) 251, 253
BccI CCATC 3 cut(s) 413, 615, 1114
BceAI ACGGC 2 cut(s) 458, 511
BciT130I CCWGG 4 cut(s) 512, 598, 613, 752
BciVI GTATCC 1 cut(s) 159
BcnI CCSGG 2 cut(s) 575, 661
BcoDI GTCTC 4 cut(s) 702, 755, 916, 1128
BfaI CTAG 2 cut(s) 26, 585
BfrI CTTAAG 1 cut(s) 557
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 7 cut(s) 240, 267, 357, 402, 544, 803, 879
BlpI GCTNAGC 1 cut(s) 962
BlsI GCNGC 7 cut(s) 241, 268, 358, 403, 545, 804, 880
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 6 cut(s) 512, 575, 598, 613, 661, 752
Bme18I GGWCC 6 cut(s) 421, 514, 601, 868, 898, 1192
BmeRI GACNNNNNGTC 1 cut(s) 607
BmgT120I GGNCC 7 cut(s) 52, 421, 514, 601, 868, 898, 1192
BmiI GGNNCC 2 cut(s) 499, 602
BmrFI CCNGG 6 cut(s) 512, 575, 598, 613, 661, 752
BpiI GAAGAC 1 cut(s) 520
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 494
Bpu1102I GCTNAGC 1 cut(s) 962
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 2 cut(s) 575, 661
BsaI GGTCTC 1 cut(s) 755
BsaJI CCNNGG 3 cut(s) 168, 597, 612
BsaXI ACNNNNNCTCC 6 cut(s) 506, 536, 752, 782, 1123, 1153
Bsc4I CCNNNNNNNGG 8 cut(s) 174, 202, 539, 573, 597, 757, 907, 1209
Bse118I RCCGGY 1 cut(s) 798
Bse1I ACTGG 1 cut(s) 544
Bse21I CCTNAGG 1 cut(s) 1204
Bse3DI GCAATG 1 cut(s) 888
BseBI CCWGG 4 cut(s) 512, 598, 613, 752
BseDI CCNNGG 3 cut(s) 168, 597, 612
BseGI GGATG 1 cut(s) 504
BseLI CCNNNNNNNGG 8 cut(s) 174, 202, 539, 573, 597, 757, 907, 1209
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 6 cut(s) 150, 242, 744, 917, 953, 1218
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 6 cut(s) 270, 293, 353, 436, 1144, 1192
BseXI GCAGC 2 cut(s) 251, 253
Bsh1236I CGCG 3 cut(s) 309, 359, 385
Bsh1285I CGRYCG 2 cut(s) 146, 954
BshFI GGCC 2 cut(s) 53, 805
BsiEI CGRYCG 2 cut(s) 146, 954
BsiHKAI GWGCWC 1 cut(s) 968
BsiSI CCGG 3 cut(s) 574, 661, 799
BslFI GGGAC 3 cut(s) 186, 590, 614
BslI CCNNNNNNNGG 8 cut(s) 174, 202, 539, 573, 597, 757, 907, 1209
BsmAI GTCTC 4 cut(s) 702, 755, 916, 1128
BsmFI GGGAC 3 cut(s) 186, 590, 614
BsnI GGCC 2 cut(s) 53, 805
Bso31I GGTCTC 1 cut(s) 755
Bsp1286I GDGCHC 1 cut(s) 968
Bsp143I GATC 3 cut(s) 143, 186, 683
Bsp1720I GCTNAGC 1 cut(s) 962
Bsp19I CCATGG 1 cut(s) 168
BspANI GGCC 2 cut(s) 53, 805
BspCNI CTCAG 6 cut(s) 149, 241, 743, 918, 954, 1217
BspFNI CGCG 3 cut(s) 309, 359, 385
BspLI GGNNCC 2 cut(s) 499, 602
BspPI GGATC 1 cut(s) 691
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 755
BsrDI GCAATG 1 cut(s) 888
BsrFI RCCGGY 1 cut(s) 798
BsrI ACTGG 1 cut(s) 544
BssAI RCCGGY 1 cut(s) 798
BssECI CCNNGG 3 cut(s) 168, 597, 612
BssMI GATC 3 cut(s) 143, 186, 683
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 691
Bst2UI CCWGG 4 cut(s) 512, 598, 613, 752
Bst4CI ACNGT 4 cut(s) 633, 827, 1009, 1139
Bst6I CTCTTC 4 cut(s) 159, 714, 783, 1019
BstAFI CTTAAG 1 cut(s) 557
BstC8I GCNNGC 4 cut(s) 271, 383, 387, 800
BstDEI CTNAG 8 cut(s) 136, 228, 667, 679, 730, 926, 962, 1204
BstDSI CCRYGG 1 cut(s) 168
BstENI CCTNNNNNAGG 1 cut(s) 1207
BstF5I GGATG 1 cut(s) 504
BstFNI CGCG 3 cut(s) 309, 359, 385
BstHHI GCGC 3 cut(s) 311, 361, 736
BstKTI GATC 3 cut(s) 146, 189, 686
BstMAI GTCTC 4 cut(s) 702, 755, 916, 1128
BstMBI GATC 3 cut(s) 143, 186, 683
BstMCI CGRYCG 2 cut(s) 146, 954
BstMWI GCNNNNNNNGC 2 cut(s) 401, 410
BstNI CCWGG 4 cut(s) 512, 598, 613, 752
BstSCI CCNGG 6 cut(s) 510, 573, 596, 611, 659, 750
BstUI CGCG 3 cut(s) 309, 359, 385
BstV1I GCAGC 2 cut(s) 251, 253
BstV2I GAAGAC 1 cut(s) 520
BstXI CCANNNNNNTGG 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 1204
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 53, 805
BtgI CCRYGG 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 454
BtsCI GGATG 1 cut(s) 504
BtsIMutI CAGTG 3 cut(s) 537, 1014, 1144
Cac8I GCNNGC 4 cut(s) 271, 383, 387, 800
CfoI GCGC 3 cut(s) 311, 361, 736
Cfr10I RCCGGY 1 cut(s) 798
Cfr13I GGNCC 7 cut(s) 52, 421, 514, 601, 868, 898, 1192
CpoI CGGWCCG 2 cut(s) 898, 1192
CsiI ACCWGGT 1 cut(s) 750
Csp6I GTAC 4 cut(s) 276, 493, 625, 634
CspI CGGWCCG 2 cut(s) 898, 1192
CviAII CATG 4 cut(s) 169, 418, 739, 934
CviQI GTAC 4 cut(s) 276, 493, 625, 634
DdeI CTNAG 8 cut(s) 136, 228, 667, 679, 730, 926, 962, 1204
DpnI GATC 3 cut(s) 145, 188, 685
DpnII GATC 3 cut(s) 143, 186, 683
DrdI GACNNNNNNGTC 1 cut(s) 1012
DriI GACNNNNNGTC 1 cut(s) 607
DseDI GACNNNNNNGTC 1 cut(s) 1012
Eam1104I CTCTTC 4 cut(s) 159, 714, 783, 1019
Eam1105I GACNNNNNGTC 1 cut(s) 607
EarI CTCTTC 4 cut(s) 159, 714, 783, 1019
EciI GGCGGA 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 755
Eco47I GGWCC 6 cut(s) 421, 514, 601, 868, 898, 1192
Eco81I CCTNAGG 1 cut(s) 1204
EcoNI CCTNNNNNAGG 1 cut(s) 1207
EcoO109I RGGNCCY 2 cut(s) 52, 601
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 4 cut(s) 510, 596, 611, 750
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 172, 421, 742, 937
FaiI YATR 7 cut(s) 86, 170, 419, 638, 740, 935, 1185
FaqI GGGAC 3 cut(s) 186, 590, 614
FatI CATG 4 cut(s) 168, 417, 738, 933
FauI CCCGC 1 cut(s) 349
Fnu4HI GCNGC 7 cut(s) 240, 267, 357, 402, 544, 803, 879
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 7 cut(s) 240, 267, 357, 402, 544, 803, 879
FspBI CTAG 2 cut(s) 26, 585
GlaI GCGC 3 cut(s) 310, 360, 735
GluI GCNGC 7 cut(s) 240, 267, 357, 402, 544, 803, 879
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 2 cut(s) 53, 805
HapII CCGG 3 cut(s) 574, 661, 799
HhaI GCGC 3 cut(s) 311, 361, 736
Hin1II CATG 4 cut(s) 172, 421, 742, 937
Hin6I GCGC 3 cut(s) 309, 359, 734
HinP1I GCGC 3 cut(s) 309, 359, 734
HinfI GANTC 8 cut(s) 726, 767, 778, 903, 947, 1148, 1187, 1197
HpaII CCGG 3 cut(s) 574, 661, 799
HphI GGTGA 7 cut(s) 324, 470, 787, 1033, 1129, 1138, 1157
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 8 cut(s) 231, 374, 620, 748, 902, 982, 1005, 1196
Hpy188III TCNNGA 2 cut(s) 866, 1206
Hpy8I GTNNAC 1 cut(s) 478
Hpy99I CGWCG 2 cut(s) 455, 1018
HpyAV CCTTC 6 cut(s) 206, 379, 511, 1063, 1068, 1203
HpyCH4III ACNGT 4 cut(s) 633, 827, 1009, 1139
HpyCH4IV ACGT 1 cut(s) 968
HpyCH4V TGCA 2 cut(s) 933, 990
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 410
HpyF3I CTNAG 8 cut(s) 136, 228, 667, 679, 730, 926, 962, 1204
HpySE526I ACGT 1 cut(s) 968
Hsp92II CATG 4 cut(s) 172, 421, 742, 937
HspAI GCGC 3 cut(s) 309, 359, 734
KroI GCCGGC 1 cut(s) 798
KroNI GCCGGC 1 cut(s) 800
Kzo9I GATC 3 cut(s) 143, 186, 683
LmnI GCTCC 2 cut(s) 366, 503
Lsp1109I GCAGC 2 cut(s) 251, 253
MabI ACCWGGT 1 cut(s) 750
MaeI CTAG 2 cut(s) 26, 585
MaeII ACGT 1 cut(s) 968
MaeIII GTNAC 2 cut(s) 44, 827
MalI GATC 3 cut(s) 145, 188, 685
MboI GATC 3 cut(s) 143, 186, 683
MboII GAAGA 7 cut(s) 146, 520, 667, 731, 800, 1036, 1228
MhlI GDGCHC 1 cut(s) 968
MluCI AATT 3 cut(s) 89, 742, 1226
MlyI GAGTC 6 cut(s) 776, 787, 912, 941, 1157, 1181
MmeI TCCRAC 4 cut(s) 186, 591, 771, 960
MroNI GCCGGC 1 cut(s) 798
MseI TTAA 4 cut(s) 558, 971, 1080, 1175
MslI CAYNNNNRTG 2 cut(s) 20, 460
MspA1I CMGCKG 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 3 cut(s) 574, 661, 799
MspR9I CCNGG 6 cut(s) 512, 575, 598, 613, 661, 752
MvaI CCWGG 4 cut(s) 512, 598, 613, 752
MvnI CGCG 3 cut(s) 309, 359, 385
MwoI GCNNNNNNNGC 2 cut(s) 401, 410
NaeI GCCGGC 1 cut(s) 800
NciI CCSGG 2 cut(s) 575, 661
NcoI CCATGG 1 cut(s) 168
NdeII GATC 3 cut(s) 143, 186, 683
NgoMIV GCCGGC 1 cut(s) 798
NlaIII CATG 4 cut(s) 172, 421, 742, 937
NlaIV GGNNCC 2 cut(s) 499, 602
NmuCI GTSAC 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 460
PdiI GCCGGC 1 cut(s) 800
PfeI GAWTC 2 cut(s) 726, 1197
PflFI GACNNNGTC 4 cut(s) 766, 950, 1009, 1190
PflMI CCANNNNNTGG 1 cut(s) 597
PfoI TCCNGGA 2 cut(s) 510, 573
PkrI GCNGC 7 cut(s) 241, 268, 358, 403, 545, 804, 880
Ple19I CGATCG 1 cut(s) 146
PleI GAGTC 6 cut(s) 775, 786, 911, 941, 1156, 1181
PpsI GAGTC 6 cut(s) 775, 786, 911, 941, 1156, 1181
PpuMI RGGWCCY 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 601
Psp6I CCWGG 4 cut(s) 510, 596, 611, 750
PspGI CCWGG 4 cut(s) 510, 596, 611, 750
PspN4I GGNNCC 2 cut(s) 499, 602
PspPI GGNCC 7 cut(s) 52, 421, 514, 601, 868, 898, 1192
PspPPI RGGWCCY 1 cut(s) 601
PsyI GACNNNGTC 4 cut(s) 766, 950, 1009, 1190
PvuI CGATCG 1 cut(s) 146
RsaI GTAC 4 cut(s) 277, 494, 626, 635
RsaNI GTAC 4 cut(s) 276, 493, 625, 634
RseI CAYNNNNRTG 2 cut(s) 20, 460
Rsr2I CGGWCCG 2 cut(s) 898, 1192
RsrII CGGWCCG 2 cut(s) 898, 1192
SaqAI TTAA 4 cut(s) 558, 971, 1080, 1175
SatI GCNGC 7 cut(s) 240, 267, 357, 402, 544, 803, 879
Sau3AI GATC 3 cut(s) 143, 186, 683
Sau96I GGNCC 7 cut(s) 52, 421, 514, 601, 868, 898, 1192
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 6 cut(s) 776, 787, 912, 941, 1157, 1181
ScrFI CCNGG 6 cut(s) 512, 575, 598, 613, 661, 752
SduI GDGCHC 1 cut(s) 968
SexAI ACCWGGT 1 cut(s) 750
SinI GGWCC 6 cut(s) 421, 514, 601, 868, 898, 1192
SmiMI CAYNNNNRTG 2 cut(s) 20, 460
SmlI CTYRAG 2 cut(s) 458, 557
SmoI CTYRAG 2 cut(s) 458, 557
Sse9I AATT 3 cut(s) 89, 742, 1226
SspMI CTAG 2 cut(s) 26, 585
StyD4I CCNGG 6 cut(s) 510, 573, 596, 611, 659, 750
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 4 cut(s) 633, 827, 1009, 1139
TaiI ACGT 1 cut(s) 971
TaqI TCGA 4 cut(s) 142, 408, 686, 954
TaqII GACCGA 5 cut(s) 779, 886, 940, 1180, 1182
TasI AATT 3 cut(s) 89, 742, 1226
TatI WGTACW 2 cut(s) 275, 633
TauI GCSGC 5 cut(s) 359, 404, 546, 805, 881
TfiI GAWTC 2 cut(s) 726, 1197
Tru1I TTAA 4 cut(s) 558, 971, 1080, 1175
Tru9I TTAA 4 cut(s) 558, 971, 1080, 1175
TscAI CASTG 3 cut(s) 544, 1014, 1144
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 239, 266
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 5 cut(s) 4, 493, 755, 899, 1082
TspGWI ACGGA 4 cut(s) 190, 439, 514, 642
TspRI CASTG 3 cut(s) 544, 1014, 1144
Tth111I GACNNNGTC 4 cut(s) 766, 950, 1009, 1190
Van91I CCANNNNNTGG 1 cut(s) 597
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 6 cut(s) 421, 514, 601, 868, 898, 1192
XagI CCTNNNNNAGG 1 cut(s) 1207
XapI RAATTY 2 cut(s) 89, 742
XspI CTAG 2 cut(s) 26, 585
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.