Rorug02G0178400

clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015501
Physical Location & Seq
Reverse (-)
16410684 .. 16413504
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0178400.1

Sequence Viewer

Length: 1269 bp
ATGCCACCCTGTTCACCACACCACCGTAGAGCCTTAACCACAATTGGGTACCTCTATCTCCTCCTCTTCTCTGTCTTTGCCCCAACCTCCTCTGCTTGCTCCAATGGGAACTGCCAGCTTCTAGAAGCTTGTGCTGCGGCCACGGACTGTGGGCCGGGTCTGTACTGTGGCAACTGCCCTGCTGGTGGCAAGACTCAACCGGTTTGTACCAGAGGCCAAGCGGTCATACCCACTTCAATTGTTAATGGCTTACCCTTCAACAAGTACACATGGCTGGTGACTCATAACTCTTTCAGCATCGTCGATGCGCCGCCTTTGCCTGGTGTTCAGAGACTCACATTTTACAATCAGGAAGATACTGTTACTAACCAGTTGAGGAATGGAGTGAGGGGGTTGATGTTGGATATGTATGATTTCGAGAATGATATCTGGCTCTGCCATTCGTTTCGGGGGCAATGCTACAACTTCACTGCGTTTCAACCTGCAATTAACACTTTGACGGAGGTGGAAGCATTTTTAAGCGAGAACCCAACAGAGATTGTGACTATTATAATCGAGGACTATGTGCATACTTCAAAGGGGTTAACAACATTGTTTACTAAGGCTGGGTTGGACAAATATTGGTTTCCTGTATCCAAAATGCCGAGAAAGGGTGAGGACTGGCCCACTGTGACTGAGATGGTGCAAGACAATCACCGGCTTATTGTTTTCACCTCTGTTGCTTCGAAGGAAGCACAGGAAGGAGTAGCTTACCAATGGAAGTACATGGTGGAAAATGAAGCCGGAGATCCTGGGGTCAAACCGGGGTCGTGCCCGAAGAGGAAAGAATCAAAGGCACTGAATTCAAAAAGTGCGTCTCTTTTCTTCCAAAATTATTTCCCAACATATCCAGTTGAATCCGAAGCTTGCAAAGAGCATTCAACTCCACTTGAAGCGATGGTTGGAACCTGCTTCAAAGCAGCTGGGGTGATGCCAAACTTTTTGGCAGTCAACTATTACATGAGGAGTGATGCCGGAGGTGTATTTGATGCTGTTGATAGAATGAATGGACCAACACTTTGTGGGTGTAGTACTCTCGCTGCCTGCCAGGCTGGAGCACCTTTTGGATCCTGCAAGAATGTTTCTGTACCTACTAGAAGTCCAGCAACCAACAATGCAGGAAGCTTTACTGGCTCTGTTCAGTTTGCAAATTCTGCTCCAACACTTTCTTCTACGAATCGTGTGGTTGCCTTTTTGTTTTATCTTCCACTGATGGCATTTTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

422

Amino Acids

46.1

Weight (kDa)

6.39

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 73 - 363 1.3e-150 PI-PLC-like catalytic domain
PI-PLC_X PF26146 111 - 333 3.6e-19 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40080
fragaria_vesca FvH4_1g20100
malus_domestica MD15G1316600.v1.1
prunus_persica Prupe.6G195400_v2.0.a1
pyrus_communis pycom15g27940
rosa_chinensis RchiOBHm_Chr2g0112101
rosa_laevigata RLG00000017950
rosa_multiflora Rmu_sc0000360.1_g000002 Rmu_sc0001294.1_g000002
rosa_roxburghii Rroxscaffold_2G00131790
rosa_rugosa Rorug02G0178400
rosa_samantha Rh2AG230400 Rh2BG243600 Rh2CG234900 Rh2DG238400
rosa_wichuraiana Rw2G017850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
Acc36I ACCTGC 2 cut(s) 490, 956
Acc65I GGTACC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 48
AciI CCGC 3 cut(s) 137, 221, 311
AclWI GGATC 3 cut(s) 782, 1101, 1114
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 2 cut(s) 841, 1189
AdeI CACNNNGTG 1 cut(s) 1061
AfaI GTAC 7 cut(s) 50, 164, 208, 266, 764, 1072, 1128
AfiI CCNNNNNNNGG 4 cut(s) 45, 185, 320, 650
AgeI ACCGGT 1 cut(s) 199
AgsI TTSAA 9 cut(s) 237, 259, 479, 576, 846, 896, 921, 932, 955
AjnI CCWGG 3 cut(s) 319, 790, 1086
AjuI GAANNNNNNNTTGG 4 cut(s) 924, 956, 1192, 1224
AluBI AGCT 6 cut(s) 118, 128, 749, 905, 962, 1164
AluI AGCT 6 cut(s) 118, 128, 749, 905, 962, 1164
Alw21I GWGCWC 1 cut(s) 1099
Alw26I GTCTC 2 cut(s) 325, 861
AlwI GGATC 3 cut(s) 782, 1101, 1114
AoxI GGCC 4 cut(s) 138, 152, 214, 662
ApeKI GCWGC 3 cut(s) 134, 959, 1079
ApoI RAATTY 2 cut(s) 841, 1189
ArsI GACNNNNNNTTYG 4 cut(s) 839, 871, 1041, 1073
AsiGI ACCGGT 1 cut(s) 199
Asp718I GGTACC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 3 cut(s) 152, 663, 1049
AsuC2I CCSGG 2 cut(s) 156, 804
AsuHPI GGTGA 6 cut(s) 6, 289, 665, 686, 703, 979
AsuII TTCGAA 1 cut(s) 725
AvaII GGWCC 1 cut(s) 1049
BaeGI GKGCMC 1 cut(s) 815
BamHI GGATCC 1 cut(s) 1106
BanI GGYRCC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 1099
BbvI GCAGC 3 cut(s) 121, 971, 1066
BccI CCATC 3 cut(s) 673, 931, 1246
BciT130I CCWGG 3 cut(s) 321, 792, 1088
BciVI GTATCC 1 cut(s) 643
BcnI CCSGG 2 cut(s) 156, 804
BcoDI GTCTC 2 cut(s) 325, 861
BfaI CTAG 2 cut(s) 122, 1134
BfuAI ACCTGC 2 cut(s) 490, 956
BfuI GTATCC 1 cut(s) 643
BglI GCCNNNNNGGC 1 cut(s) 1088
BisI GCNGC 5 cut(s) 135, 138, 311, 960, 1080
BlsI GCNGC 5 cut(s) 136, 139, 312, 961, 1081
BmcAI AGTACT 1 cut(s) 1072
Bme1390I CCNGG 5 cut(s) 156, 321, 792, 804, 1088
Bme18I GGWCC 1 cut(s) 1049
BmgT120I GGNCC 3 cut(s) 152, 663, 1049
BmiI GGNNCC 3 cut(s) 50, 946, 1108
BmrFI CCNGG 5 cut(s) 156, 321, 792, 804, 1088
BmsI GCATC 5 cut(s) 295, 306, 960, 1000, 1018
BpmI CTGGAG 1 cut(s) 1113
Bpu14I TTCGAA 1 cut(s) 725
BpuMI CCSGG 2 cut(s) 156, 804
BsaJI CCNNGG 3 cut(s) 141, 791, 803
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 185, 320, 650
Bse118I RCCGGY 2 cut(s) 199, 696
Bse1I ACTGG 4 cut(s) 370, 665, 890, 1174
Bse3DI GCAATG 1 cut(s) 461
BseBI CCWGG 3 cut(s) 321, 792, 1088
BseDI CCNNGG 3 cut(s) 141, 791, 803
BseLI CCNNNNNNNGG 4 cut(s) 45, 185, 320, 650
BseMI GCAATG 1 cut(s) 461
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 4 cut(s) 370, 665, 890, 1174
BseRI GAGGAG 4 cut(s) 50, 53, 79, 1018
BseSI GKGCMC 1 cut(s) 815
BseXI GCAGC 3 cut(s) 121, 971, 1066
BseYI CCCAGC 2 cut(s) 605, 962
BshFI GGCC 4 cut(s) 140, 154, 216, 664
BshNI GGYRCC 1 cut(s) 48
BshTI ACCGGT 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 1099
BsiSI CCGG 6 cut(s) 155, 200, 697, 783, 803, 1014
BslI CCNNNNNNNGG 4 cut(s) 45, 185, 320, 650
BsmAI GTCTC 2 cut(s) 325, 861
BsmBI CGTCTC 1 cut(s) 861
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 4 cut(s) 140, 154, 216, 664
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 815, 1099
Bsp143I GATC 2 cut(s) 787, 1106
BspACI CCGC 3 cut(s) 137, 221, 311
BspANI GGCC 4 cut(s) 140, 154, 216, 664
BspCNI CTCAG 1 cut(s) 667
BspLI GGNNCC 3 cut(s) 50, 946, 1108
BspMI ACCTGC 2 cut(s) 490, 956
BspPI GGATC 3 cut(s) 782, 1101, 1114
BspT104I TTCGAA 1 cut(s) 725
BspT107I GGYRCC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 461
BsrFI RCCGGY 2 cut(s) 199, 696
BsrI ACTGG 4 cut(s) 370, 665, 890, 1174
BssAI RCCGGY 2 cut(s) 199, 696
BssECI CCNNGG 3 cut(s) 141, 791, 803
BssMI GATC 2 cut(s) 787, 1106
Bst2UI CCWGG 3 cut(s) 321, 792, 1088
Bst4CI ACNGT 5 cut(s) 26, 149, 167, 361, 670
Bst6I CTCTTC 2 cut(s) 71, 812
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 97, 116, 907, 1084
BstDEI CTNAG 2 cut(s) 600, 675
BstDSI CCRYGG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 2 cut(s) 790, 1109
BstMAI GTCTC 2 cut(s) 325, 861
BstMBI GATC 2 cut(s) 787, 1106
BstMWI GCNNNNNNNGC 5 cut(s) 134, 316, 1088, 1170, 1193
BstNI CCWGG 3 cut(s) 321, 792, 1088
BstSCI CCNGG 5 cut(s) 154, 319, 790, 802, 1086
BstSLI GKGCMC 1 cut(s) 815
BstV1I GCAGC 3 cut(s) 121, 971, 1066
BstX2I RGATCY 2 cut(s) 787, 1106
BstYI RGATCY 2 cut(s) 787, 1106
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 4 cut(s) 140, 154, 216, 664
BtgI CCRYGG 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 950
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 4 cut(s) 468, 666, 836, 1247
BveI ACCTGC 2 cut(s) 490, 956
Cac8I GCNNGC 4 cut(s) 97, 116, 907, 1084
CfoI GCGC 1 cut(s) 310
Cfr10I RCCGGY 2 cut(s) 199, 696
Cfr13I GGNCC 3 cut(s) 152, 663, 1049
CseI GACGC 1 cut(s) 843
Csp6I GTAC 7 cut(s) 49, 163, 207, 265, 763, 1071, 1127
CspAI ACCGGT 1 cut(s) 199
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 3 cut(s) 270, 766, 1000
CviQI GTAC 7 cut(s) 49, 163, 207, 265, 763, 1071, 1127
DdeI CTNAG 2 cut(s) 600, 675
DpnI GATC 2 cut(s) 789, 1108
DpnII GATC 2 cut(s) 787, 1106
DraIII CACNNNGTG 1 cut(s) 1061
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 71, 812
EarI CTCTTC 2 cut(s) 71, 812
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 1049
EcoRI GAATTC 1 cut(s) 841
EcoRII CCWGG 3 cut(s) 319, 790, 1086
EcoRV GATATC 1 cut(s) 427
Esp3I CGTCTC 1 cut(s) 861
FaeI CATG 3 cut(s) 273, 769, 1003
FatI CATG 3 cut(s) 269, 765, 999
Fnu4HI GCNGC 5 cut(s) 135, 138, 311, 960, 1080
Fsp4HI GCNGC 5 cut(s) 135, 138, 311, 960, 1080
FspBI CTAG 2 cut(s) 122, 1134
GlaI GCGC 1 cut(s) 309
GluI GCNGC 5 cut(s) 135, 138, 311, 960, 1080
GsaI CCCAGC 2 cut(s) 609, 966
GsuI CTGGAG 1 cut(s) 1113
HaeIII GGCC 4 cut(s) 140, 154, 216, 664
HapII CCGG 6 cut(s) 155, 200, 697, 783, 803, 1014
HgaI GACGC 1 cut(s) 843
HhaI GCGC 1 cut(s) 310
Hin1II CATG 3 cut(s) 273, 769, 1003
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 2 cut(s) 585, 991
HindII GTYRAC 2 cut(s) 585, 991
HindIII AAGCTT 3 cut(s) 126, 903, 1162
HinfI GANTC 6 cut(s) 193, 280, 333, 827, 896, 1216
HpaI GTTAAC 1 cut(s) 585
HpaII CCGG 6 cut(s) 155, 200, 697, 783, 803, 1014
HphI GGTGA 6 cut(s) 6, 289, 665, 686, 703, 979
Hpy166II GTNNAC 5 cut(s) 14, 267, 585, 597, 991
Hpy188I TCNGA 2 cut(s) 330, 901
Hpy188III TCNNGA 3 cut(s) 122, 350, 418
Hpy8I GTNNAC 5 cut(s) 14, 267, 585, 597, 991
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 3 cut(s) 265, 721, 734
HpyCH4III ACNGT 5 cut(s) 26, 149, 167, 361, 670
HpyCH4V TGCA 7 cut(s) 485, 568, 685, 909, 1113, 1157, 1187
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 316, 1088, 1170, 1193
HpyF3I CTNAG 2 cut(s) 600, 675
Hsp92II CATG 3 cut(s) 273, 769, 1003
HspAI GCGC 1 cut(s) 308
KpnI GGTACC 1 cut(s) 52
KspAI GTTAAC 1 cut(s) 585
Kzo9I GATC 2 cut(s) 787, 1106
LmnI GCTCC 3 cut(s) 104, 1094, 1201
Lsp1109I GCAGC 3 cut(s) 121, 971, 1066
LweI GCATC 5 cut(s) 295, 306, 960, 1000, 1018
MaeI CTAG 2 cut(s) 122, 1134
MaeIII GTNAC 4 cut(s) 277, 361, 541, 670
MalI GATC 2 cut(s) 789, 1108
MboI GATC 2 cut(s) 787, 1106
MboII GAAGA 6 cut(s) 58, 365, 829, 856, 1200, 1235
MfeI CAATTG 2 cut(s) 42, 237
MflI RGATCY 2 cut(s) 787, 1106
MhlI GDGCHC 2 cut(s) 815, 1099
MluCI AATT 6 cut(s) 42, 237, 486, 841, 871, 1189
MlyI GAGTC 3 cut(s) 187, 274, 327
MmeI TCCRAC 4 cut(s) 381, 591, 922, 1223
MseI TTAA 5 cut(s) 35, 243, 489, 518, 584
MspA1I CMGCKG 1 cut(s) 962
MspI CCGG 6 cut(s) 155, 200, 697, 783, 803, 1014
MspR9I CCNGG 5 cut(s) 156, 321, 792, 804, 1088
MunI CAATTG 2 cut(s) 42, 237
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 3 cut(s) 321, 792, 1088
MwoI GCNNNNNNNGC 5 cut(s) 134, 316, 1088, 1170, 1193
NciI CCSGG 2 cut(s) 156, 804
NdeII GATC 2 cut(s) 787, 1106
NlaIII CATG 3 cut(s) 273, 769, 1003
NlaIV GGNNCC 3 cut(s) 50, 946, 1108
NmeAIII GCCGAG 1 cut(s) 669
NmuCI GTSAC 3 cut(s) 277, 541, 670
NspV TTCGAA 1 cut(s) 725
PctI GAATGC 1 cut(s) 916
PfeI GAWTC 3 cut(s) 827, 896, 1216
PinAI ACCGGT 1 cut(s) 199
PkrI GCNGC 5 cut(s) 136, 139, 312, 961, 1081
PleI GAGTC 3 cut(s) 187, 274, 327
PpsI GAGTC 3 cut(s) 187, 274, 327
PsiI TTATAA 1 cut(s) 551
Psp6I CCWGG 3 cut(s) 319, 790, 1086
PspFI CCCAGC 2 cut(s) 605, 962
PspGI CCWGG 3 cut(s) 319, 790, 1086
PspN4I GGNNCC 3 cut(s) 50, 946, 1108
PspPI GGNCC 3 cut(s) 152, 663, 1049
PsuI RGATCY 2 cut(s) 787, 1106
PvuII CAGCTG 1 cut(s) 962
RsaI GTAC 7 cut(s) 50, 164, 208, 266, 764, 1072, 1128
RsaNI GTAC 7 cut(s) 49, 163, 207, 265, 763, 1071, 1127
SaqAI TTAA 5 cut(s) 35, 243, 489, 518, 584
SatI GCNGC 5 cut(s) 135, 138, 311, 960, 1080
Sau3AI GATC 2 cut(s) 787, 1106
Sau96I GGNCC 3 cut(s) 152, 663, 1049
ScaI AGTACT 1 cut(s) 1072
SchI GAGTC 3 cut(s) 187, 274, 327
ScrFI CCNGG 5 cut(s) 156, 321, 792, 804, 1088
SduI GDGCHC 2 cut(s) 815, 1099
SfaNI GCATC 5 cut(s) 295, 306, 960, 1000, 1018
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 1 cut(s) 1049
Sse9I AATT 6 cut(s) 42, 237, 486, 841, 871, 1189
SsiI CCGC 3 cut(s) 137, 221, 311
SspI AATATT 1 cut(s) 620
SspMI CTAG 2 cut(s) 122, 1134
StyD4I CCNGG 5 cut(s) 154, 319, 790, 802, 1086
TaaI ACNGT 5 cut(s) 26, 149, 167, 361, 670
TaqI TCGA 4 cut(s) 303, 417, 555, 725
TasI AATT 6 cut(s) 42, 237, 486, 841, 871, 1189
TatI WGTACW 4 cut(s) 162, 264, 762, 1070
TauI GCSGC 2 cut(s) 140, 313
TfiI GAWTC 3 cut(s) 827, 896, 1216
Tru1I TTAA 5 cut(s) 35, 243, 489, 518, 584
Tru9I TTAA 5 cut(s) 35, 243, 489, 518, 584
TscAI CASTG 4 cut(s) 475, 673, 843, 1254
TseFI GTSAC 3 cut(s) 277, 541, 670
TseI GCWGC 3 cut(s) 134, 959, 1079
Tsp45I GTSAC 3 cut(s) 277, 541, 670
TspDTI ATGAA 2 cut(s) 792, 1058
TspGWI ACGGA 2 cut(s) 158, 515
TspRI CASTG 4 cut(s) 475, 673, 843, 1254
VpaK11BI GGWCC 1 cut(s) 1049
XapI RAATTY 2 cut(s) 841, 1189
XbaI TCTAGA 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XspI CTAG 2 cut(s) 122, 1134
ZrmI AGTACT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.