RLG00000017950

clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015501
Physical Location & Seq
Reverse (-)
23508215 .. 23509303
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017950

Sequence Viewer

Length: 1089 bp
ATGGGACGGAAAACAAAGATCAAAGTCCTTCTAATGGGGGCAATCAAAGACAAAGCCTCTCAGAGCAAAGCAGCAATCCTCTCCACAATCAACACCGCTGCCAGCAGTACTCCTCAATCATCTCAATCTCTCCACCTCGCCCTCCTCCGCGCCACCACCCACGACCCCTTCTCACCTCCACCCGCCAAACACCTTGCCGCGCTCCTTTCCTTCGGACACAGCTCGCGTGCCACAGCCTCCGCCGCCATCGAAGCCCTCATGGACCGCCTCCAAACCACCCAAAACTCCTCCGTCGCACTCAAGTGCCTCATCGCCGTTCACCACATCGTCAAGTACGGCTCCTTCATCCTCCAGGACCAGCTTTCCGTCTTCCCCTCCACTGGCGGCAGAAACTACCTTAAACTCTCCAACTTCCGGGACAACTCTAGCCCCATTTCCTGGGACCTCTCGTCCTGGGTCAGATGGTACGGACAGTATGTAGAAAACCTCATCATCACTTCTCGGTTCTTAGGTTTCTTCTTAGGATCGAACTCGTGCCTTGCCGATAGAGACAGACAAGAAGAGAGAATCTCAGCGCTCATGAATTCCGACCTGGTTAGGGAGACCGAGTCGCTGGTGAGTCTAATGGAAGAGATTTGCCGGCGGCCTGACTTTTCAAGTTTGAACGGTAACAGGTTGGTCGGCGAGATATTGGGTTTGGTGGGTCAGGACCAGATTGCAGCAATGAACGAGGTTTCGGTCCGAGTCAAGGAGTTTGATGAGAGACTGAGAGTCATGAGCTTTGGCGACTCGGTCGAGTTGCTGAGCACGTTAAAGAGGTCGGAGGAGTGCAAGGAGAGGCTTCTGACAGTGTCGTCGGCGGTGAAGAGTGATTTGGTAGAGAGGTTTTGGGGGTTGATGAGAGAGATGAAGGGAAGGGTTACGAAAGAGAAAGAGAAAGAGAAAGAGGGTGGTAAGTTGGTGGTGATGGCGGTGAGGAAAGACAGTGTGGGTGAGTCGGCTCGGTTTGATGACCGAGTTTTAAGGTCGTATGACTCGGTCCGATTCTCCTCAGGAAGGTTGAAGGTGAGCTTGGAATCATGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

363

Amino Acids

40.29

Weight (kDa)

9.31

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 45 - 281 3.2e-15 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40080
fragaria_vesca FvH4_1g20100
malus_domestica MD15G1316600.v1.1
prunus_persica Prupe.6G195400_v2.0.a1
pyrus_communis pycom15g27940
rosa_chinensis RchiOBHm_Chr2g0112101
rosa_laevigata RLG00000017950
rosa_multiflora Rmu_sc0000360.1_g000002 Rmu_sc0001294.1_g000002
rosa_roxburghii Rroxscaffold_2G00131790
rosa_rugosa Rorug02G0178400
rosa_samantha Rh2AG230400 Rh2BG243600 Rh2CG234900 Rh2DG238400
rosa_wichuraiana Rw2G017850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 853
AccB7I CCANNNNNTGG 1 cut(s) 438
AccII CGCG 3 cut(s) 150, 200, 226
AclWI GGATC 1 cut(s) 532
AcsI RAATTY 1 cut(s) 583
AfaI GTAC 4 cut(s) 109, 335, 467, 1084
AfeI AGCGCT 1 cut(s) 576
AfiI CCNNNNNNNGG 7 cut(s) 34, 380, 414, 438, 598, 748, 1056
AgsI TTSAA 3 cut(s) 657, 664, 1063
AhdI GACNNNNNGTC 2 cut(s) 448, 770
AjnI CCWGG 4 cut(s) 351, 437, 452, 591
AjuI GAANNNNNNNTTGG 4 cut(s) 857, 889, 1055, 1087
AleI CACNNNNGTG 1 cut(s) 301
AluBI AGCT 4 cut(s) 222, 361, 780, 1071
AluI AGCT 4 cut(s) 222, 361, 780, 1071
Alw21I GWGCWC 1 cut(s) 809
Alw26I GTCTC 3 cut(s) 543, 596, 757
AlwI GGATC 1 cut(s) 532
Aor51HI AGCGCT 1 cut(s) 576
AoxI GGCC 1 cut(s) 644
ApeKI GCWGC 3 cut(s) 71, 98, 719
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 3 cut(s) 152, 202, 577
AspS9I GGNCC 6 cut(s) 262, 355, 442, 709, 739, 1039
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 8 cut(s) 165, 311, 628, 874, 976, 985, 1004, 1078
AvaII GGWCC 6 cut(s) 262, 355, 442, 709, 739, 1039
AxyI CCTNAGG 1 cut(s) 1051
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BauI CACGAG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 809
BbvI GCAGC 3 cut(s) 83, 85, 731
BccI CCATC 3 cut(s) 254, 456, 961
BceAI ACGGC 2 cut(s) 299, 352
BciT130I CCWGG 4 cut(s) 353, 439, 454, 593
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 3 cut(s) 543, 596, 757
BfaI CTAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 578
BisI GCNGC 7 cut(s) 72, 99, 198, 243, 385, 644, 720
BlpI GCTNAGC 1 cut(s) 803
BlsI GCNGC 7 cut(s) 73, 100, 199, 244, 386, 645, 721
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 5 cut(s) 353, 416, 439, 454, 593
Bme18I GGWCC 6 cut(s) 262, 355, 442, 709, 739, 1039
BmeRI GACNNNNNGTC 2 cut(s) 448, 770
BmgT120I GGNCC 6 cut(s) 262, 355, 442, 709, 739, 1039
BmiI GGNNCC 2 cut(s) 340, 443
BmrFI CCNGG 5 cut(s) 353, 416, 439, 454, 593
BpiI GAAGAC 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 554, 586
BpmI CTGGAG 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 438, 453
BsaXI ACNNNNNCTCC 2 cut(s) 593, 623
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 380, 414, 438, 598, 748, 1056
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 1 cut(s) 385
Bse21I CCTNAGG 1 cut(s) 1051
Bse3DI GCAATG 1 cut(s) 729
BseBI CCWGG 4 cut(s) 353, 439, 454, 593
BseDI CCNNGG 2 cut(s) 438, 453
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 7 cut(s) 34, 380, 414, 438, 598, 748, 1056
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 5 cut(s) 74, 585, 758, 794, 1065
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 5 cut(s) 102, 134, 277, 839, 1039
BseXI GCAGC 3 cut(s) 83, 85, 731
Bsh1236I CGCG 3 cut(s) 150, 200, 226
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 1 cut(s) 646
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 809
BsiSI CCGG 2 cut(s) 415, 640
BslFI GGGAC 3 cut(s) 18, 431, 455
BslI CCNNNNNNNGG 7 cut(s) 34, 380, 414, 438, 598, 748, 1056
BsmAI GTCTC 3 cut(s) 543, 596, 757
BsmFI GGGAC 3 cut(s) 18, 431, 455
BsnI GGCC 1 cut(s) 646
Bso31I GGTCTC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 809
Bsp143I GATC 2 cut(s) 18, 524
Bsp1720I GCTNAGC 1 cut(s) 803
BspANI GGCC 1 cut(s) 646
BspCNI CTCAG 5 cut(s) 73, 584, 759, 795, 1064
BspFNI CGCG 3 cut(s) 150, 200, 226
BspHI TCATGA 2 cut(s) 579, 774
BspLI GGNNCC 2 cut(s) 340, 443
BspPI GGATC 1 cut(s) 532
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 729
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 1 cut(s) 385
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 2 cut(s) 438, 453
BssMI GATC 2 cut(s) 18, 524
BssSI CACGAG 1 cut(s) 532
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 4 cut(s) 353, 439, 454, 593
Bst4CI ACNGT 4 cut(s) 474, 668, 850, 986
Bst6I CTCTTC 3 cut(s) 555, 624, 860
BstC8I GCNNGC 4 cut(s) 103, 224, 228, 641
BstDEI CTNAG 7 cut(s) 60, 508, 520, 571, 767, 803, 1051
BstENI CCTNNNNNAGG 1 cut(s) 1054
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 3 cut(s) 150, 200, 226
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 3 cut(s) 152, 202, 577
BstKTI GATC 2 cut(s) 21, 527
BstMAI GTCTC 3 cut(s) 543, 596, 757
BstMBI GATC 2 cut(s) 18, 524
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 2 cut(s) 242, 251
BstNI CCWGG 4 cut(s) 353, 439, 454, 593
BstSCI CCNGG 5 cut(s) 351, 414, 437, 452, 591
BstUI CGCG 3 cut(s) 150, 200, 226
BstV1I GCAGC 3 cut(s) 83, 85, 731
BstV2I GAAGAC 1 cut(s) 361
Bsu36I CCTNAGG 1 cut(s) 1051
BsuRI GGCC 1 cut(s) 646
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 3 cut(s) 378, 855, 991
Cac8I GCNNGC 4 cut(s) 103, 224, 228, 641
CciI TCATGA 2 cut(s) 579, 774
CfoI GCGC 3 cut(s) 152, 202, 577
Cfr10I RCCGGY 1 cut(s) 639
Cfr13I GGNCC 6 cut(s) 262, 355, 442, 709, 739, 1039
CpoI CGGWCCG 2 cut(s) 739, 1039
CsiI ACCWGGT 1 cut(s) 591
Csp6I GTAC 4 cut(s) 108, 334, 466, 1083
CspI CGGWCCG 2 cut(s) 739, 1039
CviAII CATG 4 cut(s) 259, 580, 775, 1080
CviQI GTAC 4 cut(s) 108, 334, 466, 1083
DdeI CTNAG 7 cut(s) 60, 508, 520, 571, 767, 803, 1051
DpnI GATC 2 cut(s) 20, 526
DpnII GATC 2 cut(s) 18, 524
DrdI GACNNNNNNGTC 1 cut(s) 853
DriI GACNNNNNGTC 2 cut(s) 448, 770
DseDI GACNNNNNNGTC 1 cut(s) 853
Eam1104I CTCTTC 3 cut(s) 555, 624, 860
Eam1105I GACNNNNNGTC 2 cut(s) 448, 770
EarI CTCTTC 3 cut(s) 555, 624, 860
EciI GGCGGA 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 6 cut(s) 262, 355, 442, 709, 739, 1039
Eco47III AGCGCT 1 cut(s) 576
Eco81I CCTNAGG 1 cut(s) 1051
EcoNI CCTNNNNNAGG 1 cut(s) 1054
EcoO109I RGGNCCY 1 cut(s) 442
EcoRI GAATTC 1 cut(s) 583
EcoRII CCWGG 4 cut(s) 351, 437, 452, 591
FaeI CATG 4 cut(s) 262, 583, 778, 1083
FaiI YATR 6 cut(s) 260, 477, 581, 776, 1032, 1081
FalI AAGNNNNNCTT 2 cut(s) 1055, 1087
FaqI GGGAC 3 cut(s) 18, 431, 455
FatI CATG 4 cut(s) 258, 579, 774, 1079
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 7 cut(s) 72, 99, 198, 243, 385, 644, 720
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 7 cut(s) 72, 99, 198, 243, 385, 644, 720
FspBI CTAG 1 cut(s) 426
GlaI GCGC 3 cut(s) 151, 201, 576
GluI GCNGC 7 cut(s) 72, 99, 198, 243, 385, 644, 720
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 1 cut(s) 646
HapII CCGG 2 cut(s) 415, 640
HhaI GCGC 3 cut(s) 152, 202, 577
Hin1II CATG 4 cut(s) 262, 583, 778, 1083
Hin6I GCGC 3 cut(s) 150, 200, 575
HinP1I GCGC 3 cut(s) 150, 200, 575
HpaII CCGG 2 cut(s) 415, 640
HphI GGTGA 8 cut(s) 165, 311, 628, 874, 976, 985, 1004, 1078
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 8 cut(s) 63, 215, 461, 589, 743, 823, 846, 1043
Hpy188III TCNNGA 4 cut(s) 580, 707, 775, 1053
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 2 cut(s) 296, 859
HpyAV CCTTC 8 cut(s) 38, 178, 220, 352, 904, 909, 1050, 1057
HpyCH4III ACNGT 4 cut(s) 474, 668, 850, 986
HpyCH4IV ACGT 1 cut(s) 809
HpyCH4V TGCA 2 cut(s) 719, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 251
HpyF3I CTNAG 7 cut(s) 60, 508, 520, 571, 767, 803, 1051
HpySE526I ACGT 1 cut(s) 809
Hsp92II CATG 4 cut(s) 262, 583, 778, 1083
HspAI GCGC 3 cut(s) 150, 200, 575
KroI GCCGGC 1 cut(s) 639
KroNI GCCGGC 1 cut(s) 641
Kzo9I GATC 2 cut(s) 18, 524
LmnI GCTCC 2 cut(s) 207, 344
Lsp1109I GCAGC 3 cut(s) 83, 85, 731
MabI ACCWGGT 1 cut(s) 591
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 809
MaeIII GTNAC 2 cut(s) 668, 919
MalI GATC 2 cut(s) 20, 526
MboI GATC 2 cut(s) 18, 524
MboII GAAGA 5 cut(s) 361, 508, 572, 641, 877
MhlI GDGCHC 1 cut(s) 809
MluCI AATT 1 cut(s) 583
MlyI GAGTC 7 cut(s) 617, 628, 753, 780, 782, 1004, 1028
MmeI TCCRAC 3 cut(s) 432, 612, 801
MroNI GCCGGC 1 cut(s) 639
MseI TTAA 4 cut(s) 399, 812, 1022, 1087
MslI CAYNNNNRTG 1 cut(s) 301
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 2 cut(s) 415, 640
MspR9I CCNGG 5 cut(s) 353, 416, 439, 454, 593
MvaI CCWGG 4 cut(s) 353, 439, 454, 593
MvnI CGCG 3 cut(s) 150, 200, 226
MwoI GCNNNNNNNGC 2 cut(s) 242, 251
NaeI GCCGGC 1 cut(s) 641
NciI CCSGG 1 cut(s) 416
NdeII GATC 2 cut(s) 18, 524
NgoMIV GCCGGC 1 cut(s) 639
NlaIII CATG 4 cut(s) 262, 583, 778, 1083
NlaIV GGNNCC 2 cut(s) 340, 443
OliI CACNNNNGTG 1 cut(s) 301
PagI TCATGA 2 cut(s) 579, 774
PdiI GCCGGC 1 cut(s) 641
PfeI GAWTC 3 cut(s) 567, 1044, 1076
PflFI GACNNNGTC 4 cut(s) 607, 791, 850, 1037
PflMI CCANNNNNTGG 1 cut(s) 438
PfoI TCCNGGA 2 cut(s) 351, 414
PkrI GCNGC 7 cut(s) 73, 100, 199, 244, 386, 645, 721
PleI GAGTC 7 cut(s) 616, 627, 752, 779, 782, 1003, 1028
PpsI GAGTC 7 cut(s) 616, 627, 752, 779, 782, 1003, 1028
PpuMI RGGWCCY 1 cut(s) 442
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 4 cut(s) 351, 437, 452, 591
PspGI CCWGG 4 cut(s) 351, 437, 452, 591
PspN4I GGNNCC 2 cut(s) 340, 443
PspPI GGNCC 6 cut(s) 262, 355, 442, 709, 739, 1039
PspPPI RGGWCCY 1 cut(s) 442
PsyI GACNNNGTC 4 cut(s) 607, 791, 850, 1037
RsaI GTAC 4 cut(s) 109, 335, 467, 1084
RsaNI GTAC 4 cut(s) 108, 334, 466, 1083
RseI CAYNNNNRTG 1 cut(s) 301
Rsr2I CGGWCCG 2 cut(s) 739, 1039
RsrII CGGWCCG 2 cut(s) 739, 1039
SaqAI TTAA 4 cut(s) 399, 812, 1022, 1087
SatI GCNGC 7 cut(s) 72, 99, 198, 243, 385, 644, 720
Sau3AI GATC 2 cut(s) 18, 524
Sau96I GGNCC 6 cut(s) 262, 355, 442, 709, 739, 1039
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 7 cut(s) 617, 628, 753, 780, 782, 1004, 1028
ScrFI CCNGG 5 cut(s) 353, 416, 439, 454, 593
SduI GDGCHC 1 cut(s) 809
SexAI ACCWGGT 1 cut(s) 591
SinI GGWCC 6 cut(s) 262, 355, 442, 709, 739, 1039
SmiMI CAYNNNNRTG 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 5 cut(s) 351, 414, 437, 452, 591
TaaI ACNGT 4 cut(s) 474, 668, 850, 986
TaiI ACGT 1 cut(s) 812
TaqI TCGA 3 cut(s) 249, 527, 795
TaqII GACCGA 5 cut(s) 620, 727, 781, 1027, 1029
TasI AATT 1 cut(s) 583
TatI WGTACW 2 cut(s) 107, 1082
TauI GCSGC 4 cut(s) 200, 245, 387, 646
TfiI GAWTC 3 cut(s) 567, 1044, 1076
Tru1I TTAA 4 cut(s) 399, 812, 1022, 1087
Tru9I TTAA 4 cut(s) 399, 812, 1022, 1087
TscAI CASTG 3 cut(s) 385, 855, 991
TseI GCWGC 3 cut(s) 71, 98, 719
TspDTI ATGAA 4 cut(s) 334, 596, 740, 923
TspGWI ACGGA 4 cut(s) 22, 280, 355, 483
TspRI CASTG 3 cut(s) 385, 855, 991
Tth111I GACNNNGTC 4 cut(s) 607, 791, 850, 1037
Van91I CCANNNNNTGG 1 cut(s) 438
VpaK11BI GGWCC 6 cut(s) 262, 355, 442, 709, 739, 1039
XagI CCTNNNNNAGG 1 cut(s) 1054
XapI RAATTY 1 cut(s) 583
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.