pycom15g27940

clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015501
Physical Location & Seq
Reverse (-)
23561318 .. 23562472
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g27940.1

Sequence Viewer

Length: 1155 bp
ATGCTTACAGAGAGAATTTGGAGAGGTTGCTATTCCGATATTCATAGCAGAACCCGCCAACCGATAAACCCGTGGCCGACACAAACACATGACATGGGAAAAACAAGAAAGATGAGAGACCTGATGGGGGCAATCAAAGACAAAGCCTCTCAAAGCAAAGCAGCCATCCTCTCCAAACTATCCGCCTCCGCCGCATCCTCCTACCCCTACTCTCTTCACCTCACCCTCCTCCGCGCCACAACCCACGACCCCTTCACACCCCCACCCCAAAAACACCTCGCCAATCTCCTCTCCTTTGGCAACAGCTCACGCGCCACCGCCTCCGCCGCCGTCGAATCCCTTATGGACCGCCTCCAAACCACCCACGACTCAGCCGTCGCCCTCAAGTGCCTTATCGCCGTCCACCACGTGATCAAGTACGGCTCCTTCATCCTCCAGGACCAGCTCGCCATCTACCCCGCCGCAGGGGGCAGAAACTACCTCAAACTCTCCAATTTTAGAGACGATTCTACCCCTTTAGCTTGGGAACTCTCCTCCTGGGTCCGATGGTACGCTCAATACGTCGAGAACCTCCTCCTCACATCTCGGCTTCTGGGTTTCTTCCTCGGATCCAATTCCTGCACTGTGGATAAAGAAAAGGAGGAGGACCGAGTCTCCGCCCTTATGAACGCTGAGTTGGTCCGAGAGACCGAGTCGTTGGTGAGTCTGGTGGAAGAGATTTGCAGAAGGCCCGAGTCGTTGGATTTGGACGGGAACAGATTGGTGATGGAGATTTTGGGTTTGGTGGGTGAGGACCAGATTTGTGCGATGAATGAAACTATAGTCCGAGTCAACGAGTTCGACGAGAGGCTGAGTTGTCTGAGTTTATGCGACTCGGTCGAGTTGCTGAGTGCGTTGAAGCGCTCGGAGGAGTGCGCAGGGCGGCTTCTGGCGGTGCCGAATGTGAAGAGTGATCTGGTTAATGGGTTTTGGAGGCTGATTAAAGAGACGGTGGTGAAGGCTGCGGAGGTGAAGGAGGAGGAGGGGAACGGTAAGTTGGTGGTGGCCATGAGGAGACATAGTTTGAGTGAGTCGGCTCGGTTTGGTGACCGAGATATCAGACCATCTGACTCGGTTCGATTCCCGTCGGGGAGACGTGTTTCATTTGGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

385

Amino Acids

43.01

Weight (kDa)

7.61

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 76 - 264 1.7e-16 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40080
fragaria_vesca FvH4_1g20100
malus_domestica MD15G1316600.v1.1
prunus_persica Prupe.6G195400_v2.0.a1
pyrus_communis pycom15g27940
rosa_chinensis RchiOBHm_Chr2g0112101
rosa_laevigata RLG00000017950
rosa_multiflora Rmu_sc0000360.1_g000002 Rmu_sc0001294.1_g000002
rosa_roxburghii Rroxscaffold_2G00131790
rosa_rugosa Rorug02G0178400
rosa_samantha Rh2AG230400 Rh2BG243600 Rh2CG234900 Rh2DG238400
rosa_wichuraiana Rw2G017850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
Acc16I TGCGCA 1 cut(s) 916
AccB1I GGYRCC 1 cut(s) 934
AccII CGCG 2 cut(s) 234, 312
AclWI GGATC 2 cut(s) 603, 616
AcoI YGGCCR 2 cut(s) 74, 1044
AcsI RAATTY 1 cut(s) 15
AcvI CACGTG 1 cut(s) 409
AdeI CACNNNGTG 1 cut(s) 409
AfaI GTAC 2 cut(s) 419, 551
AfeI AGCGCT 1 cut(s) 902
AfiI CCNNNNNNNGG 3 cut(s) 127, 464, 465
AflIII ACRYGT 1 cut(s) 1135
AgsI TTSAA 1 cut(s) 898
AjiI CACGTC 1 cut(s) 1136
AjnI CCWGG 2 cut(s) 435, 536
AjuI GAANNNNNNNTTGG 4 cut(s) 659, 691, 1019, 1051
AluBI AGCT 3 cut(s) 306, 445, 521
AluI AGCT 3 cut(s) 306, 445, 521
Alw26I GTCTC 7 cut(s) 111, 495, 658, 680, 980, 1048, 1126
AlwI GGATC 2 cut(s) 603, 616
Ama87I CYCGRG 1 cut(s) 731
Aor51HI AGCGCT 1 cut(s) 902
AoxI GGCC 3 cut(s) 74, 728, 1044
ApeKI GCWGC 2 cut(s) 161, 1001
ApoI RAATTY 1 cut(s) 15
AspLEI GCGC 4 cut(s) 236, 314, 903, 917
AspS9I GGNCC 7 cut(s) 346, 439, 541, 646, 679, 729, 793
AsuHPI GGTGA 8 cut(s) 209, 214, 712, 775, 800, 1006, 1021, 1097
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 6 cut(s) 346, 439, 541, 646, 679, 793
BalI TGGCCA 1 cut(s) 1046
BamHI GGATCC 1 cut(s) 608
BanI GGYRCC 1 cut(s) 934
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbrPI CACGTG 1 cut(s) 409
BbvI GCAGC 2 cut(s) 173, 988
BccI CCATC 6 cut(s) 118, 173, 458, 540, 760, 1111
BceAI ACGGC 4 cut(s) 314, 359, 383, 436
BciT130I CCWGG 2 cut(s) 437, 538
BclI TGATCA 1 cut(s) 411
BcoDI GTCTC 7 cut(s) 111, 495, 658, 680, 980, 1048, 1126
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 904
BisI GCNGC 6 cut(s) 162, 192, 327, 462, 923, 1002
BlsI GCNGC 6 cut(s) 163, 193, 328, 463, 924, 1003
Bme1390I CCNGG 2 cut(s) 437, 538
Bme18I GGWCC 6 cut(s) 346, 439, 541, 646, 679, 793
BmeT110I CYCGRG 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 1136
BmgT120I GGNCC 7 cut(s) 346, 439, 541, 646, 679, 729, 793
BmiI GGNNCC 4 cut(s) 424, 542, 610, 936
BmrFI CCNGG 2 cut(s) 437, 538
BmsI GCATC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 409
BsaI GGTCTC 2 cut(s) 111, 680
BsaJI CCNNGG 3 cut(s) 71, 537, 604
BsaXI ACNNNNNCTCC 4 cut(s) 638, 668, 1045, 1075
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 464, 465
BseBI CCWGG 2 cut(s) 437, 538
BseDI CCNNGG 3 cut(s) 71, 537, 604
BseGI GGATG 3 cut(s) 165, 194, 429
BseLI CCNNNNNNNGG 3 cut(s) 127, 464, 465
BseMII CTCAG 5 cut(s) 384, 663, 842, 851, 878
BseXI GCAGC 2 cut(s) 173, 988
BsgI GTGCAG 1 cut(s) 604
Bsh1236I CGCG 2 cut(s) 234, 312
Bsh1285I CGRYCG 1 cut(s) 879
BshFI GGCC 3 cut(s) 76, 730, 1046
BshNI GGYRCC 1 cut(s) 934
BsiEI CGRYCG 1 cut(s) 879
BsiHKCI CYCGRG 1 cut(s) 731
BslI CCNNNNNNNGG 3 cut(s) 127, 464, 465
BsmAI GTCTC 7 cut(s) 111, 495, 658, 680, 980, 1048, 1126
BsmBI CGTCTC 3 cut(s) 495, 980, 1126
BsnI GGCC 3 cut(s) 76, 730, 1046
Bso31I GGTCTC 2 cut(s) 111, 680
BsoBI CYCGRG 1 cut(s) 731
Bsp143I GATC 3 cut(s) 411, 608, 952
BspANI GGCC 3 cut(s) 76, 730, 1046
BspCNI CTCAG 5 cut(s) 383, 664, 843, 852, 879
BspFNI CGCG 2 cut(s) 234, 312
BspLI GGNNCC 4 cut(s) 424, 542, 610, 936
BspPI GGATC 2 cut(s) 603, 616
BspT107I GGYRCC 1 cut(s) 934
BspTNI GGTCTC 2 cut(s) 111, 680
BssECI CCNNGG 3 cut(s) 71, 537, 604
BssMI GATC 3 cut(s) 411, 608, 952
Bst2UI CCWGG 2 cut(s) 437, 538
Bst4CI ACNGT 3 cut(s) 625, 991, 1031
Bst6I CTCTTC 3 cut(s) 219, 708, 941
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 5 cut(s) 370, 672, 851, 860, 887
BstDSI CCRYGG 1 cut(s) 71
BstEII GGTNACC 1 cut(s) 1085
BstF5I GGATG 3 cut(s) 165, 194, 429
BstFNI CGCG 2 cut(s) 234, 312
BstH2I RGCGCY 1 cut(s) 904
BstHHI GCGC 4 cut(s) 236, 314, 903, 917
BstKTI GATC 3 cut(s) 414, 611, 955
BstMAI GTCTC 7 cut(s) 111, 495, 658, 680, 980, 1048, 1126
BstMBI GATC 3 cut(s) 411, 608, 952
BstMCI CGRYCG 1 cut(s) 879
BstMWI GCNNNNNNNGC 3 cut(s) 54, 191, 326
BstNI CCWGG 2 cut(s) 437, 538
BstPI GGTNACC 1 cut(s) 1085
BstSCI CCNGG 2 cut(s) 435, 536
BstSFI CTRYAG 1 cut(s) 819
BstUI CGCG 2 cut(s) 234, 312
BstV1I GCAGC 2 cut(s) 173, 988
BstX2I RGATCY 1 cut(s) 608
BstYI RGATCY 1 cut(s) 608
BsuRI GGCC 3 cut(s) 76, 730, 1046
BtgI CCRYGG 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 821
BtrI CACGTC 1 cut(s) 1136
BtsCI GGATG 3 cut(s) 165, 194, 429
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 1 cut(s) 447
CfoI GCGC 4 cut(s) 236, 314, 903, 917
Cfr13I GGNCC 7 cut(s) 346, 439, 541, 646, 679, 729, 793
Csp6I GTAC 2 cut(s) 418, 550
CviAII CATG 3 cut(s) 89, 94, 1048
CviQI GTAC 2 cut(s) 418, 550
DdeI CTNAG 5 cut(s) 370, 672, 851, 860, 887
DpnI GATC 3 cut(s) 413, 610, 954
DpnII GATC 3 cut(s) 411, 608, 952
DraIII CACNNNGTG 1 cut(s) 409
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 2 cut(s) 74, 1044
Eam1104I CTCTTC 3 cut(s) 219, 708, 941
EarI CTCTTC 3 cut(s) 219, 708, 941
EciI GGCGGA 4 cut(s) 172, 178, 313, 646
Eco31I GGTCTC 2 cut(s) 111, 680
Eco32I GATATC 1 cut(s) 1096
Eco47I GGWCC 6 cut(s) 346, 439, 541, 646, 679, 793
Eco47III AGCGCT 1 cut(s) 902
Eco72I CACGTG 1 cut(s) 409
Eco88I CYCGRG 1 cut(s) 731
Eco91I GGTNACC 1 cut(s) 1085
EcoO65I GGTNACC 1 cut(s) 1085
EcoRII CCWGG 2 cut(s) 435, 536
EcoRV GATATC 1 cut(s) 1096
Esp3I CGTCTC 3 cut(s) 495, 980, 1126
FaeI CATG 3 cut(s) 92, 97, 1051
FaiI YATR 9 cut(s) 45, 90, 95, 344, 665, 821, 868, 1049, 1059
FatI CATG 3 cut(s) 88, 93, 1047
FauI CCCGC 2 cut(s) 62, 466
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 6 cut(s) 162, 192, 327, 462, 923, 1002
FokI GGATG 3 cut(s) 152, 181, 416
Fsp4HI GCNGC 6 cut(s) 162, 192, 327, 462, 923, 1002
FspI TGCGCA 1 cut(s) 916
GlaI GCGC 4 cut(s) 235, 313, 902, 916
GluI GCNGC 6 cut(s) 162, 192, 327, 462, 923, 1002
GsuI CTGGAG 1 cut(s) 419
HaeII RGCGCY 1 cut(s) 904
HaeIII GGCC 3 cut(s) 76, 730, 1046
HhaI GCGC 4 cut(s) 236, 314, 903, 917
Hin1II CATG 3 cut(s) 92, 97, 1051
Hin6I GCGC 4 cut(s) 234, 312, 901, 915
HinP1I GCGC 4 cut(s) 234, 312, 901, 915
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HphI GGTGA 8 cut(s) 209, 214, 712, 775, 800, 1006, 1021, 1097
Hpy166II GTNNAC 2 cut(s) 403, 832
Hpy188I TCNGA 9 cut(s) 37, 545, 608, 683, 827, 861, 907, 1100, 1108
Hpy188III TCNNGA 1 cut(s) 565
Hpy8I GTNNAC 2 cut(s) 403, 832
Hpy99I CGWCG 5 cut(s) 335, 380, 566, 845, 1129
HpyAV CCTTC 5 cut(s) 262, 436, 720, 991, 1006
HpyCH4III ACNGT 3 cut(s) 625, 991, 1031
HpyCH4IV ACGT 3 cut(s) 408, 561, 1135
HpyCH4V TGCA 2 cut(s) 621, 723
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 191, 326
HpyF3I CTNAG 5 cut(s) 370, 672, 851, 860, 887
HpySE526I ACGT 3 cut(s) 408, 561, 1135
Hsp92II CATG 3 cut(s) 92, 97, 1051
HspAI GCGC 4 cut(s) 234, 312, 901, 915
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 3 cut(s) 411, 608, 952
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 2 cut(s) 173, 988
LweI GCATC 1 cut(s) 203
MaeII ACGT 3 cut(s) 408, 561, 1135
MaeIII GTNAC 1 cut(s) 1085
MalI GATC 3 cut(s) 413, 610, 954
MboI GATC 3 cut(s) 411, 608, 952
MboII GAAGA 4 cut(s) 206, 592, 725, 958
MflI RGATCY 1 cut(s) 608
MlsI TGGCCA 1 cut(s) 1046
MluCI AATT 3 cut(s) 15, 493, 613
MluNI TGGCCA 1 cut(s) 1046
MlyI GAGTC 9 cut(s) 362, 660, 701, 712, 743, 837, 866, 1079, 1103
MmeI TCCRAC 1 cut(s) 720
Mox20I TGGCCA 1 cut(s) 1046
MscI TGGCCA 1 cut(s) 1046
MseI TTAA 2 cut(s) 960, 981
Msp20I TGGCCA 1 cut(s) 1046
MspR9I CCNGG 2 cut(s) 437, 538
MvaI CCWGG 2 cut(s) 437, 538
MvnI CGCG 2 cut(s) 234, 312
MwoI GCNNNNNNNGC 3 cut(s) 54, 191, 326
NdeII GATC 3 cut(s) 411, 608, 952
NlaIII CATG 3 cut(s) 92, 97, 1051
NlaIV GGNNCC 4 cut(s) 424, 542, 610, 936
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 1085
NsbI TGCGCA 1 cut(s) 916
PcsI WCGNNNNNNNCGW 3 cut(s) 372, 558, 840
PfeI GAWTC 3 cut(s) 335, 506, 1119
PflFI GACNNNGTC 3 cut(s) 650, 691, 875
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 6 cut(s) 163, 193, 328, 463, 924, 1003
PleI GAGTC 9 cut(s) 362, 659, 700, 711, 742, 836, 866, 1078, 1103
PmaCI CACGTG 1 cut(s) 409
PmlI CACGTG 1 cut(s) 409
PpsI GAGTC 9 cut(s) 362, 659, 700, 711, 742, 836, 866, 1078, 1103
Ppu21I YACGTR 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 435, 536
PspCI CACGTG 1 cut(s) 409
PspEI GGTNACC 1 cut(s) 1085
PspGI CCWGG 2 cut(s) 435, 536
PspN4I GGNNCC 4 cut(s) 424, 542, 610, 936
PspPI GGNCC 7 cut(s) 346, 439, 541, 646, 679, 729, 793
PsuI RGATCY 1 cut(s) 608
PsyI GACNNNGTC 3 cut(s) 650, 691, 875
RsaI GTAC 2 cut(s) 419, 551
RsaNI GTAC 2 cut(s) 418, 550
SaqAI TTAA 2 cut(s) 960, 981
SatI GCNGC 6 cut(s) 162, 192, 327, 462, 923, 1002
Sau3AI GATC 3 cut(s) 411, 608, 952
Sau96I GGNCC 7 cut(s) 346, 439, 541, 646, 679, 729, 793
SchI GAGTC 9 cut(s) 362, 660, 701, 712, 743, 837, 866, 1079, 1103
ScrFI CCNGG 2 cut(s) 437, 538
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 6 cut(s) 346, 439, 541, 646, 679, 793
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 3 cut(s) 15, 493, 613
StyD4I CCNGG 2 cut(s) 435, 536
TaaI ACNGT 3 cut(s) 625, 991, 1031
TaiI ACGT 3 cut(s) 411, 564, 1138
TaqI TCGA 5 cut(s) 333, 564, 840, 879, 1117
TaqII GACCGA 4 cut(s) 663, 704, 865, 1104
TasI AATT 3 cut(s) 15, 493, 613
TauI GCSGC 4 cut(s) 194, 329, 464, 925
TfiI GAWTC 3 cut(s) 335, 506, 1119
Tru1I TTAA 2 cut(s) 960, 981
Tru9I TTAA 2 cut(s) 960, 981
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 1 cut(s) 1085
TseI GCWGC 2 cut(s) 161, 1001
Tsp45I GTSAC 1 cut(s) 1085
TspDTI ATGAA 6 cut(s) 32, 418, 680, 824, 828, 1131
TspRI CASTG 1 cut(s) 628
Tth111I GACNNNGTC 3 cut(s) 650, 691, 875
VpaK11BI GGWCC 6 cut(s) 346, 439, 541, 646, 679, 793
XapI RAATTY 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.