Prupe.6G195400_v2.0.a1

clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015501
Physical Location & Seq
Forward (+)
20301078 .. 20302386
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G195400.1

Sequence Viewer

Length: 1089 bp
ATGGGACGCACAAGTAAGCTCAGAGAGCTGATGGGGGCAATCAAAGACAAGGCCTCCCAAAGCAAGGCAGCAATCCTTTGTAAACTCAACACAAACACTCTCTCCTCCTCCTCCTCCCTCCACCTCACCCTCCTCCGCGCCACAACCCATGACCCTTTCACGCCCCCAAACCCCAAAAGCCTCGCTGCGCTGCTCTCCTTTGGCCTCAGCTCACGTGCCACCGCTTCCTCCGCCGTGGAGTCCCTCATGGACCGCCTCCAAACCACCCACGACTCCGCCGTCGCCCTCAAGTGCCTCCTCGCCGTCCACCACGTCATCAAGTACGGCTCCTTCATCCTCCAGGACCAGCTCTCCGTGTACCCCGCCGGCGGAGGCAGAAACTACCTCAATCTCTCCAATTTCAGAGACGATTCTACCCCTGTAGCCTGGGAGCTCTCCTCCTGGGTCCGATGGTACGCTCAGTACATCGAAAACCTCCTCTTAACATCTCGGCTTCTGGGTTTCTTCGTCGGCTCGAATTCCTGCATCGTGGAGAAAGACAAAGAAGAGGAGCGAGTCTCGGCGCTTTTGAATGGCAATTTGGTCCGAGAGACCGAGTCTCTAGTGAGTCTGCTTGAGGGGATTTGCAAACGGCCCGAGTCCTTGGGTTTGGGCGGGAACAGGTTGGTGATTGAGGTTCTGGGTTTGGTGGGCGAGGATCAGATTTCTGCAATGAACGAAATTTCGGTCCGAGTTAACGAGTTTGACGAGCGGCTCAACTGTCTGAGTTTCGGCGACTCGGTCGAGTTGCTGGGCGCGTTGAAGCGGTCGGAGGATTGCGAAGGGAGGCTTTTGGCGGTGCCGAATGTAAAGAATGATTTGGTTGAGGGATTTTGGGGTTTGATAAGAGAGATGAAGACTAAGGTTGGGAAGGAGAAAGAGAGCAATAATAAGTTAATGGCGACGATGAGAGTGGAGAAAGAGAGTTACAGTGAGTCGGCTCGGTTTGGTGACCGAGTTCTGAGGCCATCTGACTGGGTCCGGTTCTCGTCGGGGAGATTGGCCGTGGATGCCTTTCATTTGTCTACTATTCAGTCGTGTGCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

363

Amino Acids

39.98

Weight (kDa)

7.6

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40080
fragaria_vesca FvH4_1g20100
malus_domestica MD15G1316600.v1.1
prunus_persica Prupe.6G195400_v2.0.a1
pyrus_communis pycom15g27940
rosa_chinensis RchiOBHm_Chr2g0112101
rosa_laevigata RLG00000017950
rosa_multiflora Rmu_sc0000360.1_g000002 Rmu_sc0001294.1_g000002
rosa_roxburghii Rroxscaffold_2G00131790
rosa_rugosa Rorug02G0178400
rosa_samantha Rh2AG230400 Rh2BG243600 Rh2CG234900 Rh2DG238400
rosa_wichuraiana Rw2G017850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 838
AccBSI CCGCTC 1 cut(s) 751
AccI GTMKAC 1 cut(s) 1064
AccII CGCG 2 cut(s) 138, 797
AclWI GGATC 1 cut(s) 705
AcoI YGGCCR 1 cut(s) 1041
AcsI RAATTY 2 cut(s) 517, 720
AcvI CACGTG 1 cut(s) 215
AfaI GTAC 4 cut(s) 323, 359, 455, 464
AfiI CCNNNNNNNGG 2 cut(s) 64, 368
AgsI TTSAA 2 cut(s) 571, 802
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 3 cut(s) 339, 425, 440
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 5 cut(s) 19, 28, 210, 349, 433
AluI AGCT 5 cut(s) 19, 28, 210, 349, 433
Alw21I GWGCWC 2 cut(s) 435, 1084
Alw26I GTCTC 4 cut(s) 399, 562, 584, 603
AlwI GGATC 1 cut(s) 705
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 5 cut(s) 51, 202, 632, 1004, 1041
ApeKI GCWGC 3 cut(s) 68, 185, 190
ApoI RAATTY 2 cut(s) 517, 720
ArsI GACNNNNNNTTYG 2 cut(s) 711, 743
AspLEI GCGC 4 cut(s) 140, 190, 565, 797
AspS9I GGNCC 7 cut(s) 250, 343, 445, 583, 633, 727, 1018
AsuHPI GGTGA 3 cut(s) 118, 679, 1001
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 6 cut(s) 250, 343, 445, 583, 727, 1018
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 1 cut(s) 435
BarI GAAGNNNNNNTAC 2 cut(s) 314, 346
BbrPI CACGTG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 902
Bbv12I GWGCWC 2 cut(s) 435, 1084
BbvCI CCTCAGC 1 cut(s) 206
BbvI GCAGC 3 cut(s) 80, 172, 177
BccI CCATC 3 cut(s) 25, 444, 1015
BceAI ACGGC 6 cut(s) 218, 263, 287, 340, 647, 1028
BciT130I CCWGG 3 cut(s) 341, 427, 442
BcoDI GTCTC 4 cut(s) 399, 562, 584, 603
BfaI CTAG 1 cut(s) 602
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 566
BisI GCNGC 4 cut(s) 69, 186, 191, 752
BlsI GCNGC 4 cut(s) 70, 187, 192, 753
Bme1390I CCNGG 3 cut(s) 341, 427, 442
Bme18I GGWCC 6 cut(s) 250, 343, 445, 583, 727, 1018
BmeT110I CYCGRG 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 7 cut(s) 250, 343, 445, 583, 633, 727, 1018
BmiI GGNNCC 4 cut(s) 328, 446, 840, 1019
BmrFI CCNGG 3 cut(s) 341, 427, 442
BmrI ACTGGG 1 cut(s) 1024
BmsI GCATC 2 cut(s) 534, 1039
BmuI ACTGGG 1 cut(s) 1024
BpiI GAAGAC 1 cut(s) 902
BplI GAGNNNNNCTC 4 cut(s) 422, 454, 542, 574
BpmI CTGGAG 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 2 cut(s) 272, 635
BsaAI YACGTR 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 5 cut(s) 234, 426, 441, 642, 1044
BsaWI WCCGGW 1 cut(s) 1020
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 86, 116, 335, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 368
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 1019
Bse3DI GCAATG 1 cut(s) 717
BseBI CCWGG 3 cut(s) 341, 427, 442
BseDI CCNNGG 5 cut(s) 234, 426, 441, 642, 1044
BseGI GGATG 2 cut(s) 333, 1054
BseLI CCNNNNNNNGG 2 cut(s) 64, 368
BseMI GCAATG 1 cut(s) 717
BseMII CTCAG 5 cut(s) 34, 220, 473, 755, 992
BseNI ACTGG 1 cut(s) 1019
BseRI GAGGAG 9 cut(s) 94, 97, 100, 103, 122, 287, 427, 467, 563
BseXI GCAGC 3 cut(s) 80, 172, 177
BseYI CCCAGC 1 cut(s) 790
Bsh1236I CGCG 2 cut(s) 138, 797
Bsh1285I CGRYCG 2 cut(s) 783, 809
BshFI GGCC 5 cut(s) 53, 204, 634, 1006, 1043
BshNI GGYRCC 1 cut(s) 838
BsiEI CGRYCG 2 cut(s) 783, 809
BsiHKAI GWGCWC 2 cut(s) 435, 1084
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 2 cut(s) 366, 1021
BslFI GGGAC 2 cut(s) 18, 226
BslI CCNNNNNNNGG 2 cut(s) 64, 368
BsmAI GTCTC 4 cut(s) 399, 562, 584, 603
BsmBI CGTCTC 1 cut(s) 399
BsmFI GGGAC 2 cut(s) 18, 226
BsnI GGCC 5 cut(s) 53, 204, 634, 1006, 1043
Bso31I GGTCTC 1 cut(s) 584
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 2 cut(s) 435, 1084
Bsp143I GATC 1 cut(s) 697
BspANI GGCC 5 cut(s) 53, 204, 634, 1006, 1043
BspCNI CTCAG 5 cut(s) 33, 219, 472, 756, 993
BspFNI CGCG 2 cut(s) 138, 797
BspLI GGNNCC 4 cut(s) 328, 446, 840, 1019
BspPI GGATC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 751
BsrDI GCAATG 1 cut(s) 717
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 1 cut(s) 1019
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 5 cut(s) 234, 426, 441, 642, 1044
BssMI GATC 1 cut(s) 697
BssT1I CCWWGG 1 cut(s) 642
Bst2UI CCWGG 3 cut(s) 341, 427, 442
Bst4CI ACNGT 2 cut(s) 761, 971
Bst6I CTCTTC 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 6 cut(s) 20, 206, 459, 764, 900, 1001
BstDSI CCRYGG 2 cut(s) 234, 1044
BstEII GGTNACC 1 cut(s) 989
BstF5I GGATG 2 cut(s) 333, 1054
BstFNI CGCG 2 cut(s) 138, 797
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 4 cut(s) 140, 190, 565, 797
BstKTI GATC 1 cut(s) 700
BstMAI GTCTC 4 cut(s) 399, 562, 584, 603
BstMBI GATC 1 cut(s) 697
BstMCI CGRYCG 2 cut(s) 783, 809
BstMWI GCNNNNNNNGC 3 cut(s) 25, 230, 1049
BstNI CCWGG 3 cut(s) 341, 427, 442
BstPI GGTNACC 1 cut(s) 989
BstSCI CCNGG 3 cut(s) 339, 425, 440
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 2 cut(s) 138, 797
BstV1I GCAGC 3 cut(s) 80, 172, 177
BstV2I GAAGAC 1 cut(s) 902
BstXI CCANNNNNNTGG 1 cut(s) 1014
BsuRI GGCC 5 cut(s) 53, 204, 634, 1006, 1043
BtgI CCRYGG 2 cut(s) 234, 1044
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 333, 1054
BtsIMutI CAGTG 1 cut(s) 976
Cac8I GCNNGC 1 cut(s) 367
CfoI GCGC 4 cut(s) 140, 190, 565, 797
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 7 cut(s) 250, 343, 445, 583, 633, 727, 1018
CpoI CGGWCCG 1 cut(s) 727
CseI GACGC 1 cut(s) 15
Csp6I GTAC 4 cut(s) 322, 358, 454, 463
CspI CGGWCCG 1 cut(s) 727
CviAII CATG 2 cut(s) 149, 247
CviQI GTAC 4 cut(s) 322, 358, 454, 463
DdeI CTNAG 6 cut(s) 20, 206, 459, 764, 900, 1001
DpnI GATC 1 cut(s) 699
DpnII GATC 1 cut(s) 697
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 1041
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 3 cut(s) 220, 265, 384
Ecl136II GAGCTC 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 642
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 435
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 6 cut(s) 250, 343, 445, 583, 727, 1018
Eco53kI GAGCTC 1 cut(s) 433
Eco72I CACGTG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 635
Eco91I GGTNACC 1 cut(s) 989
EcoICRI GAGCTC 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 989
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 3 cut(s) 339, 425, 440
EcoT14I CCWWGG 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 642
Esp3I CGTCTC 1 cut(s) 399
FaeI CATG 2 cut(s) 152, 250
FaiI YATR 2 cut(s) 150, 248
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 2 cut(s) 18, 226
FatI CATG 2 cut(s) 148, 246
FauI CCCGC 2 cut(s) 370, 647
FblI GTMKAC 1 cut(s) 1064
Fnu4HI GCNGC 4 cut(s) 69, 186, 191, 752
FokI GGATG 2 cut(s) 320, 1061
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 4 cut(s) 69, 186, 191, 752
FspBI CTAG 1 cut(s) 602
GlaI GCGC 4 cut(s) 139, 189, 564, 796
GluI GCNGC 4 cut(s) 69, 186, 191, 752
GsaI CCCAGC 1 cut(s) 794
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 5 cut(s) 53, 204, 634, 1006, 1043
HapII CCGG 2 cut(s) 366, 1021
HgaI GACGC 1 cut(s) 15
HhaI GCGC 4 cut(s) 140, 190, 565, 797
Hin1II CATG 2 cut(s) 152, 250
Hin6I GCGC 4 cut(s) 138, 188, 563, 795
HinP1I GCGC 4 cut(s) 138, 188, 563, 795
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HinfI GANTC 9 cut(s) 239, 272, 410, 555, 596, 607, 638, 776, 974
HpaI GTTAAC 1 cut(s) 736
HpaII CCGG 2 cut(s) 366, 1021
HphI GGTGA 3 cut(s) 118, 679, 1001
Hpy166II GTNNAC 5 cut(s) 83, 307, 358, 736, 1065
Hpy8I GTNNAC 5 cut(s) 83, 307, 358, 736, 1065
Hpy99I CGWCG 4 cut(s) 284, 512, 946, 1033
HpyAV CCTTC 3 cut(s) 340, 815, 904
HpyCH4III ACNGT 2 cut(s) 761, 971
HpyCH4IV ACGT 2 cut(s) 214, 312
HpyCH4V TGCA 3 cut(s) 525, 627, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 230, 1049
HpyF3I CTNAG 6 cut(s) 20, 206, 459, 764, 900, 1001
HpySE526I ACGT 2 cut(s) 214, 312
Hsp92II CATG 2 cut(s) 152, 250
HspAI GCGC 4 cut(s) 138, 188, 563, 795
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 736
Kzo9I GATC 1 cut(s) 697
LmnI GCTCC 3 cut(s) 332, 430, 550
Lsp1109I GCAGC 3 cut(s) 80, 172, 177
LweI GCATC 2 cut(s) 534, 1039
MaeI CTAG 1 cut(s) 602
MaeII ACGT 2 cut(s) 214, 312
MaeIII GTNAC 2 cut(s) 965, 989
MalI GATC 1 cut(s) 699
MbiI CCGCTC 1 cut(s) 751
MboI GATC 1 cut(s) 697
MboII GAAGA 3 cut(s) 496, 557, 907
MhlI GDGCHC 2 cut(s) 435, 1084
MluCI AATT 4 cut(s) 397, 517, 577, 720
MlyI GAGTC 8 cut(s) 248, 266, 564, 605, 616, 647, 770, 983
MmeI TCCRAC 1 cut(s) 789
MreI CGCCGGCG 1 cut(s) 365
MroNI GCCGGC 1 cut(s) 365
MseI TTAA 3 cut(s) 482, 735, 935
MspI CCGG 2 cut(s) 366, 1021
MspR9I CCNGG 3 cut(s) 341, 427, 442
MvaI CCWGG 3 cut(s) 341, 427, 442
MvnI CGCG 2 cut(s) 138, 797
MwoI GCNNNNNNNGC 3 cut(s) 25, 230, 1049
NaeI GCCGGC 1 cut(s) 367
NdeII GATC 1 cut(s) 697
NgoMIV GCCGGC 1 cut(s) 365
NlaIII CATG 2 cut(s) 152, 250
NlaIV GGNNCC 4 cut(s) 328, 446, 840, 1019
NmeAIII GCCGAG 2 cut(s) 469, 539
NmuCI GTSAC 1 cut(s) 989
PceI AGGCCT 1 cut(s) 53
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 744
PdiI GCCGGC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 410
PflFI GACNNNGTC 3 cut(s) 595, 779, 1016
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 4 cut(s) 70, 187, 192, 753
PleI GAGTC 8 cut(s) 247, 266, 563, 604, 615, 646, 770, 982
PmaCI CACGTG 1 cut(s) 215
PmlI CACGTG 1 cut(s) 215
PpsI GAGTC 8 cut(s) 247, 266, 563, 604, 615, 646, 770, 982
Ppu21I YACGTR 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 3 cut(s) 339, 425, 440
PspCI CACGTG 1 cut(s) 215
PspEI GGTNACC 1 cut(s) 989
PspFI CCCAGC 1 cut(s) 790
PspGI CCWGG 3 cut(s) 339, 425, 440
PspN4I GGNNCC 4 cut(s) 328, 446, 840, 1019
PspPI GGNCC 7 cut(s) 250, 343, 445, 583, 633, 727, 1018
PsyI GACNNNGTC 3 cut(s) 595, 779, 1016
RsaI GTAC 4 cut(s) 323, 359, 455, 464
RsaNI GTAC 4 cut(s) 322, 358, 454, 463
Rsr2I CGGWCCG 1 cut(s) 727
RsrII CGGWCCG 1 cut(s) 727
SacI GAGCTC 1 cut(s) 435
SaqAI TTAA 3 cut(s) 482, 735, 935
SatI GCNGC 4 cut(s) 69, 186, 191, 752
Sau3AI GATC 1 cut(s) 697
Sau96I GGNCC 7 cut(s) 250, 343, 445, 583, 633, 727, 1018
SchI GAGTC 8 cut(s) 248, 266, 564, 605, 616, 647, 770, 983
ScrFI CCNGG 3 cut(s) 341, 427, 442
SduI GDGCHC 2 cut(s) 435, 1084
SfaNI GCATC 2 cut(s) 534, 1039
SfcI CTRYAG 1 cut(s) 420
SgrAI CRCCGGYG 1 cut(s) 365
SinI GGWCC 6 cut(s) 250, 343, 445, 583, 727, 1018
SmlI CTYRAG 2 cut(s) 287, 614
SmoI CTYRAG 2 cut(s) 287, 614
Sse9I AATT 4 cut(s) 397, 517, 577, 720
SseBI AGGCCT 1 cut(s) 53
SspMI CTAG 1 cut(s) 602
SstI GAGCTC 1 cut(s) 435
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 3 cut(s) 339, 425, 440
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 2 cut(s) 761, 971
TaiI ACGT 2 cut(s) 217, 315
TaqI TCGA 4 cut(s) 468, 515, 783, 1084
TaqII GACCGA 4 cut(s) 608, 715, 769, 1008
TasI AATT 4 cut(s) 397, 517, 577, 720
TatI WGTACW 1 cut(s) 462
TauI GCSGC 1 cut(s) 754
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 3 cut(s) 482, 735, 935
Tru9I TTAA 3 cut(s) 482, 735, 935
TscAI CASTG 1 cut(s) 976
TseFI GTSAC 1 cut(s) 989
TseI GCWGC 3 cut(s) 68, 185, 190
Tsp45I GTSAC 1 cut(s) 989
TspDTI ATGAA 4 cut(s) 322, 728, 908, 1046
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 976
Tth111I GACNNNGTC 3 cut(s) 595, 779, 1016
VpaK11BI GGWCC 6 cut(s) 250, 343, 445, 583, 727, 1018
XapI RAATTY 2 cut(s) 517, 720
XmiI GTMKAC 1 cut(s) 1064
XspI CTAG 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.