Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013954

Physical Location & Seq

Genomic Coordinates Forward (+)

324428 .. 325678

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGTAATAACTATCGGTTTAAGCTATCGGAGTTAATCCCTAACGCTTGGTTTTACAAACTTAGAGACATGTCCAAATCCAAGAAGAAGAATCTTCAGAGCCAACCAAATAGCACCACCTCCAAGAAGAAACACCACGCAGTCCCTACTCCTACGTCCACAACGCCACTCAGTCCTAGGCCTCCTAGGCGCCCTTCTCACTCTTCCAAAGCGCCACCCTCCCATCCTCCCAGGAAGTCCTCCGGGAACCGTCTTCGTCACCGAGCCACCGTCGACTCTAAGTCTTCCACGACTTCCGGCGACAGCACTACCACAGAAACAGGTTCTTTCTCACCGGACTTTCGCTCGGATCAAGTTCTCCTCCCCGACGAGTCATTAACGGGCTCCTGGCACAGCCCTTGCAGCTCCAAGTTATCCAAAACCGCAACCTTTACGCCGCCGCCGGAACTCGAACTCCGGCCCATCATTACCAAAACGGCCGCCACCGCACGGAAAACGGCGGTGAATTCTCCGGCGGGGGTGAGACTTAGAATGCGGTCGCCGCGGATCTCGGTGAGCAGCAGCGCAAGAAGAAGCGGGTCGTCGGCTCGGCGGAGCAGGGCGGTGGTGAAGGCGTCGGTGGATCCGAAGAGAGACTTTAAGGAGTCGATGGAGGAGATGATCGCTGAGAACAAGATAAGAGCGACAAAGGATCTAGAGGAGCTTTTGGCTTGCTATCTCTGTCTCAATTCAGACGAATATCACGCTATTATCATCAATGTCTTCAAGCAAATCTGGCTTGATCTTAATCTTCCACCACCCCATTCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005856 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051510 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_binding_2 Ovate

Protein Analysis

270

Amino Acids

30.03

Weight (kDa)

10.35

Isoelectric Point (pI)

65.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_binding_2	PF13724	1 - 44	3.9e-18	DNA-binding domain
Ovate	PF04844	206 - 262	3.7e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01840
fragaria_vesca	FvH4_6g10140
malus_domestica	MD04G1172500.v1.1 MD12G1185700.v1.1
prunus_persica	Prupe.6G290900_v2.0.a1
pyrus_communis	pycom04g15240 pycom12g17430
rosa_chinensis	RchiOBHm_Chr3g0460841
rosa_laevigata	RLG00000024975
rosa_multiflora	Rmu_sc0004055.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419170
rosa_rugosa	Rorug03G0046900.1
rosa_samantha	Rh3AG104000 Rh3BG107600 Rh3CG109500 Rh3DG109500
rosa_wichuraiana	Rw3G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	544
AclWI	GGATC	5 cut(s)	357, 554, 617, 630, 699
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	80
AcyI	GRCGYC	2 cut(s)	190, 614
AfiI	CCNNNNNNNGG	1 cut(s)	489
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	766
AhdI	GACNNNNNGTC	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	230, 386
AloI	GAACNNNNNNTCC	2 cut(s)	438, 470
AluBI	AGCT	3 cut(s)	25, 405, 703
AluI	AGCT	3 cut(s)	25, 405, 703
Alw26I	GTCTC	4 cut(s)	60, 517, 627, 728
AlwI	GGATC	5 cut(s)	357, 554, 617, 630, 699
AoxI	GGCC	3 cut(s)	179, 458, 477
ApeKI	GCWGC	3 cut(s)	402, 558, 561
ApoI	RAATTY	1 cut(s)	505
AspA2I	CCTAGG	2 cut(s)	176, 185
AspLEI	GCGC	3 cut(s)	192, 214, 566
AspS9I	GGNCC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	6 cut(s)	251, 324, 514, 532, 565, 619
AvrII	CCTAGG	2 cut(s)	176, 185
BamHI	GGATCC	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	386
BbsI	GAAGAC	3 cut(s)	245, 276, 754
BbvI	GCAGC	3 cut(s)	414, 570, 573
BccI	CCATC	3 cut(s)	231, 470, 643
BceAI	ACGGC	2 cut(s)	492, 513
BciT130I	CCWGG	2 cut(s)	232, 388
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	4 cut(s)	60, 517, 627, 728
BfaI	CTAG	3 cut(s)	177, 186, 695
BfoI	RGCGCY	2 cut(s)	193, 215
BglI	GCCNNNNNGGC	1 cut(s)	187
BisI	GCNGC	7 cut(s)	403, 437, 440, 480, 542, 559, 562
BlnI	CCTAGG	2 cut(s)	176, 185
BlsI	GCNGC	7 cut(s)	404, 438, 441, 481, 543, 560, 563
Bme1390I	CCNGG	3 cut(s)	232, 244, 388
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	4 cut(s)	191, 248, 385, 624
BmrFI	CCNGG	3 cut(s)	232, 244, 388
BpiI	GAAGAC	3 cut(s)	245, 276, 754
BpuMI	CCSGG	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	786
BsaHI	GRCGYC	2 cut(s)	190, 614
BsaJI	CCNNGG	4 cut(s)	176, 185, 230, 542
BsaWI	WCCGGW	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	2 cut(s)	232, 388
BseDI	CCNNGG	4 cut(s)	176, 185, 230, 542
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	184, 657
BseRI	GAGGAG	3 cut(s)	350, 668, 713
BseX3I	CGGCCG	1 cut(s)	477
BseXI	GCAGC	3 cut(s)	414, 570, 573
Bsh1236I	CGCG	1 cut(s)	544
Bsh1285I	CGRYCG	2 cut(s)	480, 539
BshFI	GGCC	3 cut(s)	181, 460, 479
BshNI	GGYRCC	1 cut(s)	189
BsiEI	CGRYCG	2 cut(s)	480, 539
BsiSI	CCGG	6 cut(s)	243, 297, 335, 443, 457, 512
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	4 cut(s)	60, 517, 627, 728
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	537
BsnI	GGCC	3 cut(s)	181, 460, 479
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	6 cut(s)	349, 546, 622, 660, 691, 781
BspANI	GGCC	3 cut(s)	181, 460, 479
BspCNI	CTCAG	2 cut(s)	183, 658
BspFNI	CGCG	1 cut(s)	544
BspLI	GGNNCC	4 cut(s)	191, 248, 385, 624
BspPI	GGATC	5 cut(s)	357, 554, 617, 630, 699
BspT107I	GGYRCC	1 cut(s)	189
BssECI	CCNNGG	4 cut(s)	176, 185, 230, 542
BssMI	GATC	6 cut(s)	349, 546, 622, 660, 691, 781
BssNI	GRCGYC	2 cut(s)	190, 614
BssT1I	CCWWGG	2 cut(s)	176, 185
Bst2UI	CCWGG	2 cut(s)	232, 388
Bst4CI	ACNGT	2 cut(s)	251, 271
Bst6I	CTCTTC	2 cut(s)	208, 623
BstACI	GRCGYC	2 cut(s)	190, 614
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	5 cut(s)	62, 170, 279, 527, 666
BstDSI	CCRYGG	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	544
BstH2I	RGCGCY	2 cut(s)	193, 215
BstHHI	GCGC	3 cut(s)	192, 214, 566
BstKTI	GATC	6 cut(s)	352, 549, 625, 663, 694, 784
BstMAI	GTCTC	4 cut(s)	60, 517, 627, 728
BstMBI	GATC	6 cut(s)	349, 546, 622, 660, 691, 781
BstMCI	CGRYCG	2 cut(s)	480, 539
BstMWI	GCNNNNNNNGC	5 cut(s)	187, 402, 485, 541, 775
BstNI	CCWGG	2 cut(s)	232, 388
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	230, 242, 386
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	3 cut(s)	414, 570, 573
BstV2I	GAAGAC	3 cut(s)	245, 276, 754
BstX2I	RGATCY	3 cut(s)	546, 622, 691
BstYI	RGATCY	3 cut(s)	546, 622, 691
BstZI	CGGCCG	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	181, 460, 479
BtgI	CCRYGG	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	712
CfoI	GCGC	3 cut(s)	192, 214, 566
Cfr13I	GGNCC	1 cut(s)	459
Cfr42I	CCGCGG	1 cut(s)	545
CseI	GACGC	1 cut(s)	603
CviAII	CATG	1 cut(s)	70
DdeI	CTNAG	5 cut(s)	62, 170, 279, 527, 666
DinI	GGCGCC	1 cut(s)	191
DpnI	GATC	6 cut(s)	351, 548, 624, 662, 693, 783
DpnII	GATC	6 cut(s)	349, 546, 622, 660, 691, 781
DriI	GACNNNNNGTC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	477
EagI	CGGCCG	1 cut(s)	477
Eam1104I	CTCTTC	2 cut(s)	208, 623
Eam1105I	GACNNNNNGTC	1 cut(s)	280
EarI	CTCTTC	2 cut(s)	208, 623
EciI	GGCGGA	1 cut(s)	607
EclXI	CGGCCG	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	176, 185
Eco147I	AGGCCT	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	386
Eco52I	CGGCCG	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	230, 386
EcoT14I	CCWWGG	2 cut(s)	176, 185
EcoT38I	GRGCYC	1 cut(s)	386
EgeI	GGCGCC	1 cut(s)	191
EheI	GGCGCC	1 cut(s)	191
ErhI	CCWWGG	2 cut(s)	176, 185
FaeI	CATG	1 cut(s)	73
FaiI	YATR	1 cut(s)	71
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	69
FauI	CCCGC	2 cut(s)	508, 569
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	7 cut(s)	403, 437, 440, 480, 542, 559, 562
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	7 cut(s)	403, 437, 440, 480, 542, 559, 562
FspBI	CTAG	3 cut(s)	177, 186, 695
GlaI	GCGC	3 cut(s)	191, 213, 565
GluI	GCNGC	7 cut(s)	403, 437, 440, 480, 542, 559, 562
HaeII	RGCGCY	2 cut(s)	193, 215
HaeIII	GGCC	3 cut(s)	181, 460, 479
HapII	CCGG	6 cut(s)	243, 297, 335, 443, 457, 512
HgaI	GACGC	1 cut(s)	603
HhaI	GCGC	3 cut(s)	192, 214, 566
Hin1I	GRCGYC	2 cut(s)	190, 614
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	3 cut(s)	190, 212, 564
HinP1I	GCGC	3 cut(s)	190, 212, 564
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	4 cut(s)	91, 275, 371, 644
HpaII	CCGG	6 cut(s)	243, 297, 335, 443, 457, 512
HphI	GGTGA	6 cut(s)	251, 324, 514, 532, 565, 619
Hpy166II	GTNNAC	2 cut(s)	159, 274
Hpy188I	TCNGA	5 cut(s)	31, 99, 349, 627, 733
Hpy188III	TCNNGA	1 cut(s)	695
Hpy8I	GTNNAC	2 cut(s)	159, 274
Hpy99I	CGWCG	4 cut(s)	275, 371, 586, 619
HpyAV	CCTTC	2 cut(s)	204, 604
HpyCH4III	ACNGT	2 cut(s)	251, 271
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	5 cut(s)	187, 402, 485, 541, 775
HpyF3I	CTNAG	5 cut(s)	62, 170, 279, 527, 666
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	2 cut(s)	190, 614
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	3 cut(s)	190, 212, 564
KasI	GGCGCC	1 cut(s)	189
KspI	CCGCGG	1 cut(s)	545
Kzo9I	GATC	6 cut(s)	349, 546, 622, 660, 691, 781
LmnI	GCTCC	4 cut(s)	389, 410, 594, 700
Lsp1109I	GCAGC	3 cut(s)	414, 570, 573
MaeI	CTAG	3 cut(s)	177, 186, 695
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	6 cut(s)	351, 548, 624, 662, 693, 783
MboI	GATC	6 cut(s)	349, 546, 622, 660, 691, 781
MflI	RGATCY	3 cut(s)	546, 622, 691
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	2 cut(s)	505, 727
Mly113I	GGCGCC	1 cut(s)	190
MlyI	GAGTC	3 cut(s)	269, 380, 653
MnlI	CCTC	8 cut(s)	130, 192, 229, 237, 250, 371, 646, 691
MseI	TTAA	5 cut(s)	21, 35, 377, 639, 786
MspA1I	CMGCKG	1 cut(s)	544
MspI	CCGG	6 cut(s)	243, 297, 335, 443, 457, 512
MspR9I	CCNGG	3 cut(s)	232, 244, 388
Mva1269I	GAATGC	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	232, 388
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	5 cut(s)	187, 402, 485, 541, 775
NarI	GGCGCC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	6 cut(s)	349, 546, 622, 660, 691, 781
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	4 cut(s)	191, 248, 385, 624
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	181
PciI	ACATGT	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	623
PctI	GAATGC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	7 cut(s)	404, 438, 441, 481, 543, 560, 563
PleI	GAGTC	3 cut(s)	269, 379, 652
PluTI	GGCGCC	1 cut(s)	193
PpsI	GAGTC	3 cut(s)	269, 379, 652
PscI	ACATGT	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	230, 386
PspGI	CCWGG	2 cut(s)	230, 386
PspN4I	GGNNCC	4 cut(s)	191, 248, 385, 624
PspPI	GGNCC	1 cut(s)	459
PsuI	RGATCY	3 cut(s)	546, 622, 691
SacII	CCGCGG	1 cut(s)	545
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	5 cut(s)	21, 35, 377, 639, 786
SatI	GCNGC	7 cut(s)	403, 437, 440, 480, 542, 559, 562
Sau3AI	GATC	6 cut(s)	349, 546, 622, 660, 691, 781
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	3 cut(s)	269, 380, 653
ScrFI	CCNGG	3 cut(s)	232, 244, 388
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	7 cut(s)	27, 122, 158, 325, 407, 431, 705
SfoI	GGCGCC	1 cut(s)	191
Sfr303I	CCGCGG	1 cut(s)	545
SgrBI	CCGCGG	1 cut(s)	545
Sse9I	AATT	2 cut(s)	505, 727
SseBI	AGGCCT	1 cut(s)	181
SspDI	GGCGCC	1 cut(s)	189
SspMI	CTAG	3 cut(s)	177, 186, 695
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	3 cut(s)	230, 242, 386
StyI	CCWWGG	2 cut(s)	176, 185
TaaI	ACNGT	2 cut(s)	251, 271
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	273, 450, 647
TasI	AATT	2 cut(s)	505, 727
TauI	GCSGC	4 cut(s)	439, 442, 482, 544
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	5 cut(s)	21, 35, 377, 639, 786
Tru9I	TTAA	5 cut(s)	21, 35, 377, 639, 786
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	402, 558, 561
Tsp45I	GTSAC	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	505
XapI	RAATTY	1 cut(s)	505
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	1 cut(s)	73
XmaJI	CCTAGG	2 cut(s)	176, 185
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	3 cut(s)	177, 186, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.