Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0013954

Physical Location & Seq

Genomic Coordinates Reverse (-)

8620021 .. 8622302

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG107600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGTAAGTACAAGTTTAGATTAACTGATATGATACCCAATGCCTGGTTTTACAAGCTCAAAGACATGAGCAAACCCAGAAAGAACCAGAGCAGCAATTCTCATCCCAAGAAGAAAAACCAACCACCACCGCCCCCATTTTCTTCTTCAGCAACACCAACAAGCCCAGCAAAGCCAAAGCAGGTGACCCATCACCACCATTGTCATCAATCAAGAAAGTCGTACTACTTCACAAGGGAGCTGAATAACTCCACAGGTGAGAACGGACCACTCTGCAACACCCCCATAAACCCAAAAGTCTTTAACACCAATTTGCCTCATGAGCCACCAAGAAAATCCTCCAGACAAAAACCAAGGAAGAGTCGAATTGCAACTAGCAAATCCTCCTCTGATTCCAAGCCTGCCATGTCGACCACCTCCTCTGTTTCTGCCGGGTGTCGGGCCTCGATTGAATCCGTCTGGACCAAATCGGATTCTCCACCGGAGGAGCAGCTCTGGTCTTCTTCGTCTCCCGACAGCTCCGAGCTTGAGTTTCATCGCCATGAGCCTCTTGAATTCCGATGTGACCGTGTTCTTGCTACAGAAACATTTGATGGTATTATTTCTATGTCGTGTTCTAATGAGAAAGACATCATCATCGACGTGGATAACTCATCTGAGAGGAAGGAATTTGATTTGTTCTCCGAGCTTGAGCTTCCTCCGATTATAACCAAGCCCGAAAGCTTCACTGAAATGGTGAGCGAGGTCAAGAAGAAGAAGAAAGAGACCAAGGAGCAGTCAATCAAGTCCAGAAAAAGCTCACATGGATCAGAGAACAATAGAGAGCATCGTACGAGTTCTGTTAGAAGAGTATCTTCGAGCACTTCACCGGGAGTTAAGCTTCGGATTAACTCTCCGAGAATTGCAAACCGGAAAATTAACCAGGCCCAAGTGGGACGCCGGAGTCTGTCGTCGAATTCGAGCTCAAAGCGGAGGAGTCTCTCGGAGAGTTTTGCAATTGTGAAGTCGTCATTTGATCCTCAAAGGGATTTCAGGGAATCAATGATAGAGATGATCATGGAGAACAACATCAAGGCGTCAAAGGACTTGGAAGATCTTCTTGCATGTTATCTTTCTCTGAATGCAGATGAATACCATGAGCTCATCATCAAAGTCTTCAAGCAAATCTGGTTTGATCTCACTGACATCCAGTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_binding_2 Ovate

Protein Analysis

399

Amino Acids

45.44

Weight (kDa)

9.57

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_binding_2	PF13724	1 - 42	1.5e-18	DNA-binding domain
Ovate	PF04844	337 - 393	8.8e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01840
fragaria_vesca	FvH4_6g10140
malus_domestica	MD04G1172500.v1.1 MD12G1185700.v1.1
prunus_persica	Prupe.6G290900_v2.0.a1
pyrus_communis	pycom04g15240 pycom12g17430
rosa_chinensis	RchiOBHm_Chr3g0460841
rosa_laevigata	RLG00000024975
rosa_multiflora	Rmu_sc0004055.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419170
rosa_rugosa	Rorug03G0046900.1
rosa_samantha	Rh3AG104000 Rh3BG107600 Rh3CG109500 Rh3DG109500
rosa_wichuraiana	Rw3G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
AarI	CACCTGC	1 cut(s)	172
AasI	GACNNNNNNGTC	1 cut(s)	942
Acc36I	ACCTGC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	410
AciI	CCGC	2 cut(s)	131, 970
AclWI	GGATC	2 cut(s)	814, 1010
AcsI	RAATTY	3 cut(s)	554, 668, 955
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	2 cut(s)	937, 1076
AfaI	GTAC	3 cut(s)	11, 224, 832
AfiI	CCNNNNNNNGG	2 cut(s)	45, 438
AgsI	TTSAA	3 cut(s)	452, 554, 1159
AhdI	GACNNNNNGTC	1 cut(s)	1189
AjiI	CACGTC	1 cut(s)	643
AjnI	CCWGG	2 cut(s)	44, 921
Alw21I	GWGCWC	3 cut(s)	863, 965, 1143
Alw26I	GTCTC	3 cut(s)	513, 758, 983
AlwI	GGATC	2 cut(s)	814, 1010
AoxI	GGCC	2 cut(s)	441, 924
ApeKI	GCWGC	2 cut(s)	93, 490
ApoI	RAATTY	3 cut(s)	554, 668, 955
Asp700I	GAANNNNTTC	1 cut(s)	1095
AspS9I	GGNCC	4 cut(s)	266, 441, 462, 925
AsuC2I	CCSGG	2 cut(s)	433, 870
AsuHPI	GGTGA	5 cut(s)	185, 196, 269, 748, 858
AvaII	GGWCC	2 cut(s)	266, 462
BanII	GRGCYC	2 cut(s)	965, 1143
BbsI	GAAGAC	2 cut(s)	492, 1147
Bbv12I	GWGCWC	3 cut(s)	863, 965, 1143
BbvI	GCAGC	2 cut(s)	105, 502
BccI	CCATC	2 cut(s)	198, 587
BciT130I	CCWGG	2 cut(s)	46, 923
BclI	TGATCA	1 cut(s)	1053
BcnI	CCSGG	2 cut(s)	433, 870
BcoDI	GTCTC	3 cut(s)	513, 758, 983
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	579
BfuAI	ACCTGC	1 cut(s)	172
BglII	AGATCT	1 cut(s)	1093
BisI	GCNGC	2 cut(s)	94, 491
BlsI	GCNGC	2 cut(s)	95, 492
Bme1390I	CCNGG	4 cut(s)	46, 433, 870, 923
Bme18I	GGWCC	2 cut(s)	266, 462
BmeRI	GACNNNNNGTC	1 cut(s)	1189
BmgBI	CACGTC	1 cut(s)	643
BmgT120I	GGNCC	4 cut(s)	266, 441, 462, 925
BmrFI	CCNGG	4 cut(s)	46, 433, 870, 923
BmsI	GCATC	1 cut(s)	835
BpiI	GAAGAC	2 cut(s)	492, 1147
BpmI	CTGGAG	1 cut(s)	325
BpuEI	CTTGAG	2 cut(s)	548, 710
BpuMI	CCSGG	2 cut(s)	433, 870
BsaHI	GRCGYC	2 cut(s)	937, 1076
BsaI	GGTCTC	1 cut(s)	758
BsaJI	CCNNGG	2 cut(s)	353, 768
BsaWI	WCCGGW	2 cut(s)	481, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 438
Bse1I	ACTGG	1 cut(s)	1189
BseBI	CCWGG	2 cut(s)	46, 923
BseDI	CCNNGG	2 cut(s)	353, 768
BseGI	GGATG	2 cut(s)	103, 1185
BseLI	CCNNNNNNNGG	2 cut(s)	45, 438
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	1 cut(s)	1189
BseRI	GAGGAG	4 cut(s)	376, 409, 500, 988
BseXI	GCAGC	2 cut(s)	105, 502
BseYI	CCCAGC	1 cut(s)	166
BshFI	GGCC	2 cut(s)	443, 926
BsiHKAI	GWGCWC	3 cut(s)	863, 965, 1143
BsiSI	CCGG	5 cut(s)	432, 482, 869, 910, 940
BsiWI	CGTACG	1 cut(s)	830
BslFI	GGGAC	1 cut(s)	948
BslI	CCNNNNNNNGG	2 cut(s)	45, 438
BsmAI	GTCTC	3 cut(s)	513, 758, 983
BsmBI	CGTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	948
BsmI	GAATGC	1 cut(s)	1126
BsnI	GGCC	2 cut(s)	443, 926
Bso31I	GGTCTC	1 cut(s)	758
Bsp1286I	GDGCHC	3 cut(s)	863, 965, 1143
Bsp143I	GATC	5 cut(s)	806, 1015, 1053, 1093, 1174
BspACI	CCGC	2 cut(s)	131, 970
BspANI	GGCC	2 cut(s)	443, 926
BspCNI	CTCAG	1 cut(s)	649
BspHI	TCATGA	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	2 cut(s)	814, 1010
BspTNI	GGTCTC	1 cut(s)	758
BsrI	ACTGG	1 cut(s)	1189
BssECI	CCNNGG	2 cut(s)	353, 768
BssMI	GATC	5 cut(s)	806, 1015, 1053, 1093, 1174
BssNI	GRCGYC	2 cut(s)	937, 1076
BssT1I	CCWWGG	2 cut(s)	353, 768
Bst2UI	CCWGG	2 cut(s)	46, 923
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	2 cut(s)	353, 841
BstACI	GRCGYC	2 cut(s)	937, 1076
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	657
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	103, 1185
BstKTI	GATC	5 cut(s)	809, 1018, 1056, 1096, 1177
BstMAI	GTCTC	3 cut(s)	513, 758, 983
BstMBI	GATC	5 cut(s)	806, 1015, 1053, 1093, 1174
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	2 cut(s)	46, 923
BstNSI	RCATGY	1 cut(s)	1107
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	4 cut(s)	44, 431, 868, 921
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	2 cut(s)	105, 502
BstV2I	GAAGAC	2 cut(s)	492, 1147
BstX2I	RGATCY	1 cut(s)	1093
BstYI	RGATCY	1 cut(s)	1093
BsuRI	GGCC	2 cut(s)	443, 926
BtgZI	GCGATG	1 cut(s)	521
BtrI	CACGTC	1 cut(s)	643
BtsCI	GGATG	2 cut(s)	103, 1185
BtsIMutI	CAGTG	2 cut(s)	726, 1179
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	4 cut(s)	266, 441, 462, 925
CseI	GACGC	2 cut(s)	945, 1065
Csp6I	GTAC	3 cut(s)	10, 223, 831
CviAII	CATG	8 cut(s)	67, 320, 406, 542, 803, 1057, 1104, 1136
CviQI	GTAC	3 cut(s)	10, 223, 831
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	5 cut(s)	808, 1017, 1055, 1095, 1176
DpnII	GATC	5 cut(s)	806, 1015, 1053, 1093, 1174
DrdI	GACNNNNNNGTC	1 cut(s)	942
DriI	GACNNNNNGTC	1 cut(s)	1189
DseDI	GACNNNNNNGTC	1 cut(s)	942
Eam1104I	CTCTTC	2 cut(s)	353, 841
Eam1105I	GACNNNNNGTC	1 cut(s)	1189
EarI	CTCTTC	2 cut(s)	353, 841
Ecl136II	GAGCTC	2 cut(s)	963, 1141
Eco130I	CCWWGG	2 cut(s)	353, 768
Eco24I	GRGCYC	2 cut(s)	965, 1143
Eco31I	GGTCTC	1 cut(s)	758
Eco47I	GGWCC	2 cut(s)	266, 462
Eco53kI	GAGCTC	2 cut(s)	963, 1141
Eco57I	CTGAAG	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	184
EcoICRI	GAGCTC	2 cut(s)	963, 1141
EcoO65I	GGTNACC	1 cut(s)	184
EcoRI	GAATTC	2 cut(s)	554, 955
EcoRII	CCWGG	2 cut(s)	44, 921
EcoT14I	CCWWGG	2 cut(s)	353, 768
EcoT38I	GRGCYC	2 cut(s)	965, 1143
ErhI	CCWWGG	2 cut(s)	353, 768
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	8 cut(s)	70, 323, 409, 545, 806, 1060, 1107, 1139
FalI	AAGNNNNNCTT	4 cut(s)	838, 870, 1083, 1115
FaqI	GGGAC	1 cut(s)	948
FatI	CATG	8 cut(s)	66, 319, 405, 541, 802, 1056, 1103, 1135
FbaI	TGATCA	1 cut(s)	1053
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	2 cut(s)	94, 491
FokI	GGATG	2 cut(s)	90, 1172
FriOI	GRGCYC	2 cut(s)	965, 1143
Fsp4HI	GCNGC	2 cut(s)	94, 491
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	2 cut(s)	94, 491
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	443, 926
HapII	CCGG	5 cut(s)	432, 482, 869, 910, 940
HgaI	GACGC	2 cut(s)	945, 1065
Hin1I	GRCGYC	2 cut(s)	937, 1076
Hin1II	CATG	8 cut(s)	70, 323, 409, 545, 806, 1060, 1107, 1139
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	2 cut(s)	721, 878
HinfI	GANTC	7 cut(s)	361, 392, 452, 473, 943, 976, 1037
HpaII	CCGG	5 cut(s)	432, 482, 869, 910, 940
HphI	GGTGA	5 cut(s)	185, 196, 269, 748, 858
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188III	TCNNGA	8 cut(s)	213, 320, 342, 460, 512, 551, 748, 789
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	2 cut(s)	644, 955
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	6 cut(s)	276, 371, 905, 995, 1103, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	1 cut(s)	642
Hsp92I	GRCGYC	2 cut(s)	937, 1076
Hsp92II	CATG	8 cut(s)	70, 323, 409, 545, 806, 1060, 1107, 1139
Ksp22I	TGATCA	1 cut(s)	1053
Kzo9I	GATC	5 cut(s)	806, 1015, 1053, 1093, 1174
LmnI	GCTCC	4 cut(s)	238, 487, 524, 772
Lsp1109I	GCAGC	2 cut(s)	105, 502
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	2 cut(s)	184, 563
MalI	GATC	5 cut(s)	808, 1017, 1055, 1095, 1176
MboI	GATC	5 cut(s)	806, 1015, 1053, 1093, 1174
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	1 cut(s)	1093
MhlI	GDGCHC	3 cut(s)	863, 965, 1143
MluCI	AATT	9 cut(s)	97, 310, 366, 554, 668, 900, 915, 955, 996
MlyI	GAGTC	3 cut(s)	370, 952, 985
MroXI	GAANNNNTTC	1 cut(s)	1095
MseI	TTAA	5 cut(s)	23, 303, 876, 888, 918
MslI	CAYNNNNRTG	3 cut(s)	540, 641, 731
MspI	CCGG	5 cut(s)	432, 482, 869, 910, 940
MspR9I	CCNGG	4 cut(s)	46, 433, 870, 923
MunI	CAATTG	1 cut(s)	996
Mva1269I	GAATGC	1 cut(s)	1126
MvaI	CCWGG	2 cut(s)	46, 923
MwoI	GCNNNNNNNGC	1 cut(s)	322
NciI	CCSGG	2 cut(s)	433, 870
NdeII	GATC	5 cut(s)	806, 1015, 1053, 1093, 1174
NlaIII	CATG	8 cut(s)	70, 323, 409, 545, 806, 1060, 1107, 1139
NmuCI	GTSAC	2 cut(s)	184, 563
NspI	RCATGY	1 cut(s)	1107
PagI	TCATGA	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	956
PctI	GAATGC	1 cut(s)	1126
PdmI	GAANNNNTTC	1 cut(s)	1095
PfeI	GAWTC	4 cut(s)	392, 452, 473, 1037
Pfl23II	CGTACG	1 cut(s)	830
PflMI	CCANNNNNTGG	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	95, 492
PleI	GAGTC	3 cut(s)	369, 951, 984
PpsI	GAGTC	3 cut(s)	369, 951, 984
PsiI	TTATAA	1 cut(s)	707
Psp124BI	GAGCTC	2 cut(s)	965, 1143
Psp6I	CCWGG	2 cut(s)	44, 921
PspEI	GGTNACC	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	44, 921
PspLI	CGTACG	1 cut(s)	830
PspPI	GGNCC	4 cut(s)	266, 441, 462, 925
PsuI	RGATCY	1 cut(s)	1093
RsaI	GTAC	3 cut(s)	11, 224, 832
RsaNI	GTAC	3 cut(s)	10, 223, 831
RseI	CAYNNNNRTG	3 cut(s)	540, 641, 731
SacI	GAGCTC	2 cut(s)	965, 1143
SalI	GTCGAC	1 cut(s)	409
SaqAI	TTAA	5 cut(s)	23, 303, 876, 888, 918
SatI	GCNGC	2 cut(s)	94, 491
Sau3AI	GATC	5 cut(s)	806, 1015, 1053, 1093, 1174
Sau96I	GGNCC	4 cut(s)	266, 441, 462, 925
SchI	GAGTC	3 cut(s)	370, 952, 985
ScrFI	CCNGG	4 cut(s)	46, 433, 870, 923
SduI	GDGCHC	3 cut(s)	863, 965, 1143
SfaNI	GCATC	1 cut(s)	835
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	2 cut(s)	266, 462
SmiMI	CAYNNNNRTG	3 cut(s)	540, 641, 731
SmlI	CTYRAG	2 cut(s)	527, 689
SmoI	CTYRAG	2 cut(s)	527, 689
Sse9I	AATT	9 cut(s)	97, 310, 366, 554, 668, 900, 915, 955, 996
SsiI	CCGC	2 cut(s)	131, 970
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	2 cut(s)	965, 1143
StyD4I	CCNGG	4 cut(s)	44, 431, 868, 921
StyI	CCWWGG	2 cut(s)	353, 768
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	7 cut(s)	364, 410, 446, 639, 857, 953, 959
TasI	AATT	9 cut(s)	97, 310, 366, 554, 668, 900, 915, 955, 996
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	4 cut(s)	392, 452, 473, 1037
Tru1I	TTAA	5 cut(s)	23, 303, 876, 888, 918
Tru9I	TTAA	5 cut(s)	23, 303, 876, 888, 918
TscAI	CASTG	2 cut(s)	733, 1186
TseFI	GTSAC	2 cut(s)	184, 563
TseI	GCWGC	2 cut(s)	93, 490
Tsp45I	GTSAC	2 cut(s)	184, 563
TspDTI	ATGAA	2 cut(s)	524, 1143
TspGWI	ACGGA	2 cut(s)	279, 445
TspRI	CASTG	2 cut(s)	733, 1186
Van91I	CCANNNNNTGG	1 cut(s)	45
VpaK11BI	GGWCC	2 cut(s)	266, 462
XapI	RAATTY	3 cut(s)	554, 668, 955
XceI	RCATGY	1 cut(s)	1107
XmiI	GTMKAC	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	1095
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.