Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004055.1

Orthogroup ID

OG0013954

Physical Location & Seq

Genomic Coordinates Forward (+)

16 .. 483

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004055.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggtgagcgaggtcaagaagaagaagaaagagaccaaggagcagtcaatcaagtccagaaaaagctcacatggatcagagaacaatagagagcatcgtacaagttctgttagaagagtatcttcgagcacttcaccgggagttaagcttcggattaactctccgagaattgcaaaccggaaaattaaccaggcccaagtgggacgccggagtctgtcgtcgaattcgagctcaaagcggaggagtctctcggagagttttgcaattgtgaagtcgtcatttgatcctcaaagggatttcagggaatcaatgatagagatgatcatggagaacaacatcaaggcgtcaaaggacttggaagatcttcttgcatgttatctttctctgaatgcagatgaataccatgagctcatcatcaaagtcttcaagcaaatctggtttgatctcactgacatccagtcaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_binding_2 Ovate

Protein Analysis

155

Amino Acids

17.84

Weight (kDa)

10.04

Isoelectric Point (pI)

65.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01840
fragaria_vesca	FvH4_6g10140
malus_domestica	MD04G1172500.v1.1 MD12G1185700.v1.1
prunus_persica	Prupe.6G290900_v2.0.a1
pyrus_communis	pycom04g15240 pycom12g17430
rosa_chinensis	RchiOBHm_Chr3g0460841
rosa_laevigata	RLG00000024975
rosa_multiflora	Rmu_sc0004055.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419170
rosa_rugosa	Rorug03G0046900.1
rosa_samantha	Rh3AG104000 Rh3BG107600 Rh3CG109500 Rh3DG109500
rosa_wichuraiana	Rw3G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	210
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	2 cut(s)	82, 278
AcsI	RAATTY	1 cut(s)	223
AcyI	GRCGYC	2 cut(s)	205, 344
AfaI	GTAC	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	427
AhdI	GACNNNNNGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	4 cut(s)	66, 148, 231, 409
AluI	AGCT	4 cut(s)	66, 148, 231, 409
Alw21I	GWGCWC	3 cut(s)	131, 233, 411
Alw26I	GTCTC	2 cut(s)	26, 251
AlwI	GGATC	2 cut(s)	82, 278
AoxI	GGCC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	16, 126
BanII	GRGCYC	2 cut(s)	233, 411
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	3 cut(s)	131, 233, 411
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	26, 251
BglII	AGATCT	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	138, 191
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	138, 191
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	138
BsaHI	GRCGYC	2 cut(s)	205, 344
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	3 cut(s)	131, 233, 411
BsiSI	CCGG	3 cut(s)	137, 178, 208
BslFI	GGGAC	1 cut(s)	216
BsmAI	GTCTC	2 cut(s)	26, 251
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	3 cut(s)	131, 233, 411
Bsp143I	GATC	5 cut(s)	74, 283, 321, 361, 442
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	82, 278
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	74, 283, 321, 361, 442
BssNI	GRCGYC	2 cut(s)	205, 344
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	109
BstACI	GRCGYC	2 cut(s)	205, 344
BstF5I	GGATG	1 cut(s)	453
BstKTI	GATC	5 cut(s)	77, 286, 324, 364, 445
BstMAI	GTCTC	2 cut(s)	26, 251
BstMBI	GATC	5 cut(s)	74, 283, 321, 361, 442
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	136, 189
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	447
Cfr13I	GGNCC	1 cut(s)	193
CseI	GACGC	2 cut(s)	213, 333
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	4 cut(s)	71, 325, 372, 404
CviJI	RGCY	5 cut(s)	66, 148, 194, 231, 409
CviKI_1	RGCY	5 cut(s)	66, 148, 194, 231, 409
CviQI	GTAC	1 cut(s)	99
DpnI	GATC	5 cut(s)	76, 285, 323, 363, 444
DpnII	GATC	5 cut(s)	74, 283, 321, 361, 442
DrdI	GACNNNNNNGTC	1 cut(s)	210
DriI	GACNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	109
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	109
Ecl136II	GAGCTC	2 cut(s)	231, 409
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	233, 411
Eco31I	GGTCTC	1 cut(s)	26
Eco53kI	GAGCTC	2 cut(s)	231, 409
EcoICRI	GAGCTC	2 cut(s)	231, 409
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	233, 411
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	4 cut(s)	74, 328, 375, 407
FaiI	YATR	4 cut(s)	72, 326, 373, 405
FalI	AAGNNNNNCTT	4 cut(s)	106, 138, 351, 383
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	4 cut(s)	70, 324, 371, 403
FbaI	TGATCA	1 cut(s)	321
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	2 cut(s)	233, 411
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	3 cut(s)	137, 178, 208
HgaI	GACGC	2 cut(s)	213, 333
Hin1I	GRCGYC	2 cut(s)	205, 344
Hin1II	CATG	4 cut(s)	74, 328, 375, 407
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	3 cut(s)	211, 244, 305
HpaII	CCGG	3 cut(s)	137, 178, 208
HphI	GGTGA	2 cut(s)	16, 126
Hpy188I	TCNGA	5 cut(s)	79, 153, 165, 253, 387
Hpy188III	TCNNGA	2 cut(s)	16, 57
Hpy99I	CGWCG	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	173, 263, 371, 392
Hsp92I	GRCGYC	2 cut(s)	205, 344
Hsp92II	CATG	4 cut(s)	74, 328, 375, 407
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	5 cut(s)	74, 283, 321, 361, 442
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	8 cut(s)	70, 150, 176, 191, 203, 221, 286, 421
LweI	GCATC	1 cut(s)	103
MalI	GATC	5 cut(s)	76, 285, 323, 363, 444
MboI	GATC	5 cut(s)	74, 283, 321, 361, 442
MboII	GAAGA	8 cut(s)	31, 34, 37, 114, 126, 356, 371, 415
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	131, 233, 411
MluCI	AATT	4 cut(s)	168, 183, 223, 264
MlyI	GAGTC	2 cut(s)	220, 253
MnlI	CCTC	3 cut(s)	4, 234, 297
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	3 cut(s)	144, 156, 186
MspI	CCGG	3 cut(s)	137, 178, 208
MspR9I	CCNGG	2 cut(s)	138, 191
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	191
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	5 cut(s)	74, 283, 321, 361, 442
NlaIII	CATG	4 cut(s)	74, 328, 375, 407
NspI	RCATGY	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	305
PleI	GAGTC	2 cut(s)	219, 252
PpsI	GAGTC	2 cut(s)	219, 252
Psp124BI	GAGCTC	2 cut(s)	233, 411
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SacI	GAGCTC	2 cut(s)	233, 411
SaqAI	TTAA	3 cut(s)	144, 156, 186
Sau3AI	GATC	5 cut(s)	74, 283, 321, 361, 442
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	2 cut(s)	220, 253
ScrFI	CCNGG	2 cut(s)	138, 191
SduI	GDGCHC	3 cut(s)	131, 233, 411
SetI	ASST	5 cut(s)	15, 68, 150, 233, 411
SfaNI	GCATC	1 cut(s)	103
Sse9I	AATT	4 cut(s)	168, 183, 223, 264
SsiI	CCGC	1 cut(s)	238
SstI	GAGCTC	2 cut(s)	233, 411
StyD4I	CCNGG	2 cut(s)	136, 189
StyI	CCWWGG	1 cut(s)	36
TaqI	TCGA	3 cut(s)	125, 221, 227
TasI	AATT	4 cut(s)	168, 183, 223, 264
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	3 cut(s)	144, 156, 186
Tru9I	TTAA	3 cut(s)	144, 156, 186
TscAI	CASTG	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	375
XmnI	GAANNNNTTC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.