MD04G1172500.v1.1

DNA-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
26393334 .. 26394497
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1172500.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGGGAAACCACAAGTTTAGATTATCAGATATGATGTCCAATTCCTGGTTTAGCAAGCTGAAAGACATGAGCAAGCCCAGAAAAAAGCAATCCAAGAAGAAAAAACAACAAAAACCACCCTCGTTTGCTTCTTCTTCTCTAACAAAAAATTTTACAGAGCCCTCGAAGCCAACGCGGCAACTGCCCCACCACCTCCACTGCCACCCAAGACAGTCTTACTACTTCACAAGAGAGCTCACCTCCCCTGCGCCTGCCCCATCTCACAGATTCCCCACCTCCTCCTCCCCCACCAATGACCCACCACCAAAAAAATCCAACAGACAAAAACTCAGGAACAGAATTACCACCTTGCCCTCTTCCGATCCCAACCTCCTAACTTCCTCTGTTTCAGCCGGCTGCGGCTGCCACGCCACCACCATTGAATCCGTCTGGACTAAATCCCAATCCCCACCTGAGACATGGTCGTCTTTCTCCTTCGACAGCTTCCCAGACCCGACGTCAGAGATGGAGTTTCTCGACGACGACAATGAGCCTGAATTCCGGTGCGACCGCGTTCTCGCCGCTTACCATGTCGACGCCGGTGAAAAAGACGTCGTTGTCGACGTCGACAAGGCGTCTCTGACCATGAAATTATCCGATGTGAAAGTATCTGATGCGCCGGAGGATGGGTTGGATTCGTTTTCCGAGCTCGAGCTCCCTCCGATTATAACCAAGCCACCAAAATTCAGCGAAATGGTGAGCGAACTGAAGAAGAACAAGAACAAGAAGAAAGAACAGAGGAGCATTACTAAAAGTGATGGTAGAAGGCTTCCTTCATCAAATGCAGCTACATCTCCCGGCGTCCGTCTTCGGAATTCGCCGAGAATTTCCAACCGGAAGATCAACCAGGCCGGCCTCAGCCGGCGGAGCGTGTCGTCGAATTCGAGCTCGAAGCGAAGGAGCATCTCCGACAGCTTCGCAATTGTCAAATCATCGTTTGATCCCCAGAGGGATTTCAGGGAATCAATGGTGGAGATGATCTTGGAGAACAACATCAAGGCATCCAAGGATTTGGAAGATCTTCTTGCATGTTATCTTTCTTTGAATTCTGATGAGTACCATGAGATGATCATCAACGTGTTCAAGCAAATCTGGATTGATCTCACTGATATTAGGTCCAAGTAA

Protein Analysis

388

Amino Acids

43.78

Weight (kDa)

9.45

Isoelectric Point (pI)

65.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_binding_2 PF13724 1 - 36 1.4e-15 DNA-binding domain
Ovate PF04844 325 - 381 8e-25 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013954)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01840
fragaria_vesca FvH4_6g10140
malus_domestica MD04G1172500.v1.1 MD12G1185700.v1.1
prunus_persica Prupe.6G290900_v2.0.a1
pyrus_communis pycom04g15240 pycom12g17430
rosa_chinensis RchiOBHm_Chr3g0460841
rosa_laevigata RLG00000024975
rosa_multiflora Rmu_sc0004055.1_g000001
rosa_roxburghii Rroxscaffold_6G00419170
rosa_rugosa Rorug03G0046900.1
rosa_samantha Rh3AG104000 Rh3BG107600 Rh3CG109500 Rh3DG109500
rosa_wichuraiana Rw3G008850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
AasI GACNNNNNNGTC 2 cut(s) 463, 596
AatII GACGTC 3 cut(s) 500, 594, 606
AccB7I CCANNNNNTGG 1 cut(s) 45
AccI GTMKAC 3 cut(s) 573, 600, 606
AccII CGCG 2 cut(s) 175, 552
AciI CCGC 5 cut(s) 175, 399, 550, 561, 904
AclWI GGATC 2 cut(s) 356, 974
AcsI RAATTY 7 cut(s) 148, 536, 722, 853, 864, 919, 1084
AcuI CTGAAG 1 cut(s) 767
AcyI GRCGYC 6 cut(s) 497, 576, 591, 603, 614, 840
AfaI GTAC 1 cut(s) 1097
AfiI CCNNNNNNNGG 2 cut(s) 45, 665
AflIII ACRYGT 1 cut(s) 1116
AgsI TTSAA 3 cut(s) 422, 1084, 1123
AhdI GACNNNNNGTC 2 cut(s) 496, 613
AjnI CCWGG 2 cut(s) 44, 885
AluBI AGCT 8 cut(s) 58, 235, 483, 688, 694, 827, 927, 954
AluI AGCT 8 cut(s) 58, 235, 483, 688, 694, 827, 927, 954
Alw21I GWGCWC 4 cut(s) 237, 690, 696, 929
Alw26I GTCTC 2 cut(s) 449, 621
AlwI GGATC 2 cut(s) 356, 974
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 2 cut(s) 888, 892
ApeKI GCWGC 3 cut(s) 396, 402, 824
ApoI RAATTY 7 cut(s) 148, 536, 722, 853, 864, 919, 1084
Asp700I GAANNNNTTC 1 cut(s) 1059
AspLEI GCGC 2 cut(s) 250, 658
AspS9I GGNCC 1 cut(s) 1155
AsuC2I CCSGG 1 cut(s) 837
AsuHPI GGTGA 3 cut(s) 229, 593, 748
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 1155
BanII GRGCYC 5 cut(s) 162, 237, 690, 696, 929
BbsI GAAGAC 1 cut(s) 839
Bbv12I GWGCWC 4 cut(s) 237, 690, 696, 929
BbvCI CCTCAGC 1 cut(s) 896
BbvI GCAGC 3 cut(s) 383, 389, 836
BccI CCATC 4 cut(s) 265, 499, 659, 791
BciT130I CCWGG 2 cut(s) 46, 887
BclI TGATCA 1 cut(s) 1107
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 2 cut(s) 449, 621
BglI GCCNNNNNGGC 1 cut(s) 175
BglII AGATCT 1 cut(s) 1057
BisI GCNGC 6 cut(s) 176, 397, 400, 403, 561, 825
BlsI GCNGC 6 cut(s) 177, 398, 401, 404, 562, 826
Bme1390I CCNGG 3 cut(s) 46, 837, 887
Bme18I GGWCC 1 cut(s) 1155
BmeRI GACNNNNNGTC 2 cut(s) 496, 613
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 1 cut(s) 1155
BmrFI CCNGG 3 cut(s) 46, 837, 887
BmsI GCATC 3 cut(s) 643, 951, 1049
BpiI GAAGAC 1 cut(s) 839
BplI GAGNNNNNCTC 2 cut(s) 224, 256
Bpu10I CCTNAGC 1 cut(s) 896
BpuMI CCSGG 1 cut(s) 837
BsaBI GATNNNNATC 1 cut(s) 1109
BsaHI GRCGYC 6 cut(s) 497, 576, 591, 603, 614, 840
BsaJI CCNNGG 1 cut(s) 1044
BsaWI WCCGGW 2 cut(s) 540, 873
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 665
Bse118I RCCGGY 4 cut(s) 392, 578, 890, 900
Bse8I GATNNNNATC 1 cut(s) 1109
BseBI CCWGG 2 cut(s) 46, 887
BseDI CCNNGG 1 cut(s) 1044
BseGI GGATG 2 cut(s) 670, 1040
BseJI GATNNNNATC 1 cut(s) 1109
BseLI CCNNNNNNNGG 2 cut(s) 45, 665
BseMII CTCAG 3 cut(s) 343, 444, 910
BseRI GAGGAG 3 cut(s) 268, 271, 793
BseXI GCAGC 3 cut(s) 383, 389, 836
Bsh1236I CGCG 2 cut(s) 175, 552
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 2 cut(s) 890, 894
BsiEI CGRYCG 1 cut(s) 550
BsiHKAI GWGCWC 4 cut(s) 237, 690, 696, 929
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 8 cut(s) 393, 541, 579, 659, 837, 874, 891, 901
BslI CCNNNNNNNGG 2 cut(s) 45, 665
BsmAI GTCTC 2 cut(s) 449, 621
BsmBI CGTCTC 1 cut(s) 621
BsnI GGCC 2 cut(s) 890, 894
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 5 cut(s) 162, 237, 690, 696, 929
Bsp143I GATC 7 cut(s) 361, 879, 979, 1017, 1057, 1107, 1138
BspACI CCGC 5 cut(s) 175, 399, 550, 561, 904
BspANI GGCC 2 cut(s) 890, 894
BspCNI CTCAG 3 cut(s) 342, 445, 909
BspFNI CGCG 2 cut(s) 175, 552
BspPI GGATC 2 cut(s) 356, 974
BsrFI RCCGGY 4 cut(s) 392, 578, 890, 900
BssAI RCCGGY 4 cut(s) 392, 578, 890, 900
BssECI CCNNGG 1 cut(s) 1044
BssMI GATC 7 cut(s) 361, 879, 979, 1017, 1057, 1107, 1138
BssNI GRCGYC 6 cut(s) 497, 576, 591, 603, 614, 840
BssT1I CCWWGG 1 cut(s) 1044
Bst2UI CCWGG 2 cut(s) 46, 887
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 361
BstACI GRCGYC 6 cut(s) 497, 576, 591, 603, 614, 840
BstC8I GCNNGC 6 cut(s) 56, 74, 252, 394, 892, 902
BstDEI CTNAG 3 cut(s) 329, 453, 896
BstF5I GGATG 2 cut(s) 670, 1040
BstFNI CGCG 2 cut(s) 175, 552
BstHHI GCGC 2 cut(s) 250, 658
BstKTI GATC 7 cut(s) 364, 882, 982, 1020, 1060, 1110, 1141
BstMAI GTCTC 2 cut(s) 449, 621
BstMBI GATC 7 cut(s) 361, 879, 979, 1017, 1057, 1107, 1138
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 5 cut(s) 166, 175, 181, 402, 906
BstNI CCWGG 2 cut(s) 46, 887
BstNSI RCATGY 1 cut(s) 1071
BstSCI CCNGG 3 cut(s) 44, 835, 885
BstUI CGCG 2 cut(s) 175, 552
BstV1I GCAGC 3 cut(s) 383, 389, 836
BstV2I GAAGAC 1 cut(s) 839
BstX2I RGATCY 1 cut(s) 1057
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstYI RGATCY 1 cut(s) 1057
BsuRI GGCC 2 cut(s) 890, 894
BtsCI GGATG 2 cut(s) 670, 1040
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 196, 1143
Cac8I GCNNGC 6 cut(s) 56, 74, 252, 394, 892, 902
CfoI GCGC 2 cut(s) 250, 658
Cfr10I RCCGGY 4 cut(s) 392, 578, 890, 900
Cfr13I GGNCC 1 cut(s) 1155
CseI GACGC 3 cut(s) 584, 603, 829
Csp6I GTAC 1 cut(s) 1096
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 6 cut(s) 67, 459, 569, 625, 1068, 1100
CviQI GTAC 1 cut(s) 1096
DdeI CTNAG 3 cut(s) 329, 453, 896
DpnI GATC 7 cut(s) 363, 881, 981, 1019, 1059, 1109, 1140
DpnII GATC 7 cut(s) 361, 879, 979, 1017, 1057, 1107, 1138
DrdI GACNNNNNNGTC 2 cut(s) 463, 596
DriI GACNNNNNGTC 2 cut(s) 496, 613
DseDI GACNNNNNNGTC 2 cut(s) 463, 596
Eam1104I CTCTTC 1 cut(s) 361
Eam1105I GACNNNNNGTC 2 cut(s) 496, 613
EarI CTCTTC 1 cut(s) 361
EciI GGCGGA 1 cut(s) 919
Ecl136II GAGCTC 4 cut(s) 235, 688, 694, 927
Eco130I CCWWGG 1 cut(s) 1044
Eco24I GRGCYC 5 cut(s) 162, 237, 690, 696, 929
Eco47I GGWCC 1 cut(s) 1155
Eco53kI GAGCTC 4 cut(s) 235, 688, 694, 927
Eco57I CTGAAG 1 cut(s) 767
Eco88I CYCGRG 1 cut(s) 689
EcoICRI GAGCTC 4 cut(s) 235, 688, 694, 927
EcoRI GAATTC 4 cut(s) 536, 853, 919, 1084
EcoRII CCWGG 2 cut(s) 44, 885
EcoT14I CCWWGG 1 cut(s) 1044
EcoT38I GRGCYC 5 cut(s) 162, 237, 690, 696, 929
ErhI CCWWGG 1 cut(s) 1044
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 6 cut(s) 70, 462, 572, 628, 1071, 1103
FaiI YATR 8 cut(s) 32, 68, 460, 570, 626, 707, 1069, 1101
FalI AAGNNNNNCTT 6 cut(s) 199, 231, 796, 828, 1047, 1079
FatI CATG 6 cut(s) 66, 458, 568, 624, 1067, 1099
FbaI TGATCA 1 cut(s) 1107
FblI GTMKAC 3 cut(s) 573, 600, 606
Fnu4HI GCNGC 6 cut(s) 176, 397, 400, 403, 561, 825
FokI GGATG 2 cut(s) 677, 1027
FriOI GRGCYC 5 cut(s) 162, 237, 690, 696, 929
FseI GGCCGGCC 1 cut(s) 894
Fsp4HI GCNGC 6 cut(s) 176, 397, 400, 403, 561, 825
GlaI GCGC 2 cut(s) 249, 657
GluI GCNGC 6 cut(s) 176, 397, 400, 403, 561, 825
HaeIII GGCC 2 cut(s) 890, 894
HapII CCGG 8 cut(s) 393, 541, 579, 659, 837, 874, 891, 901
HgaI GACGC 3 cut(s) 584, 603, 829
HhaI GCGC 2 cut(s) 250, 658
Hin1I GRCGYC 6 cut(s) 497, 576, 591, 603, 614, 840
Hin1II CATG 6 cut(s) 70, 462, 572, 628, 1071, 1103
Hin6I GCGC 2 cut(s) 248, 656
HinP1I GCGC 2 cut(s) 248, 656
HincII GTYRAC 3 cut(s) 574, 601, 607
HindII GTYRAC 3 cut(s) 574, 601, 607
HinfI GANTC 4 cut(s) 267, 422, 674, 1001
HpaII CCGG 8 cut(s) 393, 541, 579, 659, 837, 874, 891, 901
HphI GGTGA 3 cut(s) 229, 593, 748
Hpy166II GTNNAC 3 cut(s) 574, 601, 607
Hpy188III TCNNGA 4 cut(s) 331, 430, 515, 1132
Hpy8I GTNNAC 3 cut(s) 574, 601, 607
Hpy99I CGWCG 8 cut(s) 499, 521, 524, 578, 596, 605, 608, 919
HpyAV CCTTC 4 cut(s) 484, 798, 822, 930
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 4 cut(s) 497, 591, 603, 1116
HpyCH4V TGCA 2 cut(s) 824, 1067
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 175, 181, 402, 906
HpyF3I CTNAG 3 cut(s) 329, 453, 896
HpySE526I ACGT 4 cut(s) 497, 591, 603, 1116
Hsp92I GRCGYC 6 cut(s) 497, 576, 591, 603, 614, 840
Hsp92II CATG 6 cut(s) 70, 462, 572, 628, 1071, 1103
HspAI GCGC 2 cut(s) 248, 656
KroI GCCGGC 3 cut(s) 392, 890, 900
KroNI GCCGGC 3 cut(s) 394, 892, 902
Ksp22I TGATCA 1 cut(s) 1107
Kzo9I GATC 7 cut(s) 361, 879, 979, 1017, 1057, 1107, 1138
LmnI GCTCC 4 cut(s) 699, 780, 906, 939
Lsp1109I GCAGC 3 cut(s) 383, 389, 836
LweI GCATC 3 cut(s) 643, 951, 1049
MaeII ACGT 4 cut(s) 497, 591, 603, 1116
MalI GATC 7 cut(s) 363, 881, 981, 1019, 1059, 1109, 1140
MboI GATC 7 cut(s) 361, 879, 979, 1017, 1057, 1107, 1138
MfeI CAATTG 1 cut(s) 960
MflI RGATCY 1 cut(s) 1057
MhlI GDGCHC 5 cut(s) 162, 237, 690, 696, 929
MmeI TCCRAC 4 cut(s) 339, 651, 894, 972
MroNI GCCGGC 3 cut(s) 392, 890, 900
MroXI GAANNNNTTC 1 cut(s) 1059
MslI CAYNNNNRTG 1 cut(s) 1115
MspI CCGG 8 cut(s) 393, 541, 579, 659, 837, 874, 891, 901
MspR9I CCNGG 3 cut(s) 46, 837, 887
MunI CAATTG 1 cut(s) 960
MvaI CCWGG 2 cut(s) 46, 887
MvnI CGCG 2 cut(s) 175, 552
MwoI GCNNNNNNNGC 5 cut(s) 166, 175, 181, 402, 906
NaeI GCCGGC 3 cut(s) 394, 892, 902
NciI CCSGG 1 cut(s) 837
NdeII GATC 7 cut(s) 361, 879, 979, 1017, 1057, 1107, 1138
NgoMIV GCCGGC 3 cut(s) 392, 890, 900
NlaIII CATG 6 cut(s) 70, 462, 572, 628, 1071, 1103
NmeAIII GCCGAG 1 cut(s) 885
NspI RCATGY 1 cut(s) 1071
PaeR7I CTCGAG 1 cut(s) 689
PcsI WCGNNNNNNNCGW 3 cut(s) 597, 600, 920
PdiI GCCGGC 3 cut(s) 394, 892, 902
PdmI GAANNNNTTC 1 cut(s) 1059
PfeI GAWTC 4 cut(s) 267, 422, 674, 1001
PflFI GACNNNGTC 1 cut(s) 460
PflMI CCANNNNNTGG 1 cut(s) 45
PkrI GCNGC 6 cut(s) 177, 398, 401, 404, 562, 826
PsiI TTATAA 1 cut(s) 707
Psp124BI GAGCTC 4 cut(s) 237, 690, 696, 929
Psp6I CCWGG 2 cut(s) 44, 885
PspGI CCWGG 2 cut(s) 44, 885
PspPI GGNCC 1 cut(s) 1155
PspXI VCTCGAGB 1 cut(s) 689
PsuI RGATCY 1 cut(s) 1057
PsyI GACNNNGTC 1 cut(s) 460
RigI GGCCGGCC 1 cut(s) 894
RsaI GTAC 1 cut(s) 1097
RsaNI GTAC 1 cut(s) 1096
RseI CAYNNNNRTG 1 cut(s) 1115
SacI GAGCTC 4 cut(s) 237, 690, 696, 929
SalI GTCGAC 3 cut(s) 572, 599, 605
SatI GCNGC 6 cut(s) 176, 397, 400, 403, 561, 825
Sau3AI GATC 7 cut(s) 361, 879, 979, 1017, 1057, 1107, 1138
Sau96I GGNCC 1 cut(s) 1155
ScrFI CCNGG 3 cut(s) 46, 837, 887
SduI GDGCHC 5 cut(s) 162, 237, 690, 696, 929
SfaNI GCATC 3 cut(s) 643, 951, 1049
Sfr274I CTCGAG 1 cut(s) 689
SgrAI CRCCGGYG 1 cut(s) 578
SinI GGWCC 1 cut(s) 1155
SlaI CTCGAG 1 cut(s) 689
SmiMI CAYNNNNRTG 1 cut(s) 1115
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SsiI CCGC 5 cut(s) 175, 399, 550, 561, 904
SstI GAGCTC 4 cut(s) 237, 690, 696, 929
StyD4I CCNGG 3 cut(s) 44, 835, 885
StyI CCWWGG 1 cut(s) 1044
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 4 cut(s) 500, 594, 606, 1119
TauI GCSGC 3 cut(s) 178, 402, 563
TfiI GAWTC 4 cut(s) 267, 422, 674, 1001
TscAI CASTG 2 cut(s) 203, 1150
TseI GCWGC 3 cut(s) 396, 402, 824
TspDTI ATGAA 2 cut(s) 641, 804
TspGWI ACGGA 2 cut(s) 415, 833
TspRI CASTG 2 cut(s) 203, 1150
Tth111I GACNNNGTC 1 cut(s) 460
Van91I CCANNNNNTGG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 1155
XapI RAATTY 7 cut(s) 148, 536, 722, 853, 864, 919, 1084
XceI RCATGY 1 cut(s) 1071
XcmI CCANNNNNNNNNTGG 1 cut(s) 456
XhoI CTCGAG 1 cut(s) 689
XmiI GTMKAC 3 cut(s) 573, 600, 606
XmnI GAANNNNTTC 1 cut(s) 1059
ZraI GACGTC 3 cut(s) 498, 592, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.