DNA-binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G01840 |
| fragaria_vesca | FvH4_6g10140 |
| malus_domestica | MD04G1172500.v1.1 MD12G1185700.v1.1 |
| prunus_persica | Prupe.6G290900_v2.0.a1 |
| pyrus_communis | pycom04g15240 pycom12g17430 |
| rosa_chinensis | RchiOBHm_Chr3g0460841 |
| rosa_laevigata | RLG00000024975 |
| rosa_multiflora | Rmu_sc0004055.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00419170 |
| rosa_rugosa | Rorug03G0046900.1 |
| rosa_samantha | Rh3AG104000 Rh3BG107600 Rh3CG109500 Rh3DG109500 |
| rosa_wichuraiana | Rw3G008850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 707 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 463, 596 |
| AatII | GACGTC | 3 cut(s) | 500, 594, 606 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 45 |
| AccI | GTMKAC | 3 cut(s) | 573, 600, 606 |
| AccII | CGCG | 2 cut(s) | 175, 552 |
| AciI | CCGC | 5 cut(s) | 175, 399, 550, 561, 904 |
| AclWI | GGATC | 2 cut(s) | 356, 974 |
| AcsI | RAATTY | 7 cut(s) | 148, 536, 722, 853, 864, 919, 1084 |
| AcuI | CTGAAG | 1 cut(s) | 767 |
| AcyI | GRCGYC | 6 cut(s) | 497, 576, 591, 603, 614, 840 |
| AfaI | GTAC | 1 cut(s) | 1097 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 45, 665 |
| AflIII | ACRYGT | 1 cut(s) | 1116 |
| AgsI | TTSAA | 3 cut(s) | 422, 1084, 1123 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 496, 613 |
| AjnI | CCWGG | 2 cut(s) | 44, 885 |
| AluBI | AGCT | 8 cut(s) | 58, 235, 483, 688, 694, 827, 927, 954 |
| AluI | AGCT | 8 cut(s) | 58, 235, 483, 688, 694, 827, 927, 954 |
| Alw21I | GWGCWC | 4 cut(s) | 237, 690, 696, 929 |
| Alw26I | GTCTC | 2 cut(s) | 449, 621 |
| AlwI | GGATC | 2 cut(s) | 356, 974 |
| Ama87I | CYCGRG | 1 cut(s) | 689 |
| AoxI | GGCC | 2 cut(s) | 888, 892 |
| ApeKI | GCWGC | 3 cut(s) | 396, 402, 824 |
| ApoI | RAATTY | 7 cut(s) | 148, 536, 722, 853, 864, 919, 1084 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1059 |
| AspLEI | GCGC | 2 cut(s) | 250, 658 |
| AspS9I | GGNCC | 1 cut(s) | 1155 |
| AsuC2I | CCSGG | 1 cut(s) | 837 |
| AsuHPI | GGTGA | 3 cut(s) | 229, 593, 748 |
| AvaI | CYCGRG | 1 cut(s) | 689 |
| AvaII | GGWCC | 1 cut(s) | 1155 |
| BanII | GRGCYC | 5 cut(s) | 162, 237, 690, 696, 929 |
| BbsI | GAAGAC | 1 cut(s) | 839 |
| Bbv12I | GWGCWC | 4 cut(s) | 237, 690, 696, 929 |
| BbvCI | CCTCAGC | 1 cut(s) | 896 |
| BbvI | GCAGC | 3 cut(s) | 383, 389, 836 |
| BccI | CCATC | 4 cut(s) | 265, 499, 659, 791 |
| BciT130I | CCWGG | 2 cut(s) | 46, 887 |
| BclI | TGATCA | 1 cut(s) | 1107 |
| BcnI | CCSGG | 1 cut(s) | 837 |
| BcoDI | GTCTC | 2 cut(s) | 449, 621 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 175 |
| BglII | AGATCT | 1 cut(s) | 1057 |
| BisI | GCNGC | 6 cut(s) | 176, 397, 400, 403, 561, 825 |
| BlsI | GCNGC | 6 cut(s) | 177, 398, 401, 404, 562, 826 |
| Bme1390I | CCNGG | 3 cut(s) | 46, 837, 887 |
| Bme18I | GGWCC | 1 cut(s) | 1155 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 496, 613 |
| BmeT110I | CYCGRG | 1 cut(s) | 689 |
| BmgT120I | GGNCC | 1 cut(s) | 1155 |
| BmrFI | CCNGG | 3 cut(s) | 46, 837, 887 |
| BmsI | GCATC | 3 cut(s) | 643, 951, 1049 |
| BpiI | GAAGAC | 1 cut(s) | 839 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 224, 256 |
| Bpu10I | CCTNAGC | 1 cut(s) | 896 |
| BpuMI | CCSGG | 1 cut(s) | 837 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1109 |
| BsaHI | GRCGYC | 6 cut(s) | 497, 576, 591, 603, 614, 840 |
| BsaJI | CCNNGG | 1 cut(s) | 1044 |
| BsaWI | WCCGGW | 2 cut(s) | 540, 873 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 653, 683 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 45, 665 |
| Bse118I | RCCGGY | 4 cut(s) | 392, 578, 890, 900 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1109 |
| BseBI | CCWGG | 2 cut(s) | 46, 887 |
| BseDI | CCNNGG | 1 cut(s) | 1044 |
| BseGI | GGATG | 2 cut(s) | 670, 1040 |
| BseJI | GATNNNNATC | 1 cut(s) | 1109 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 45, 665 |
| BseMII | CTCAG | 3 cut(s) | 343, 444, 910 |
| BseRI | GAGGAG | 3 cut(s) | 268, 271, 793 |
| BseXI | GCAGC | 3 cut(s) | 383, 389, 836 |
| Bsh1236I | CGCG | 2 cut(s) | 175, 552 |
| Bsh1285I | CGRYCG | 1 cut(s) | 550 |
| BshFI | GGCC | 2 cut(s) | 890, 894 |
| BsiEI | CGRYCG | 1 cut(s) | 550 |
| BsiHKAI | GWGCWC | 4 cut(s) | 237, 690, 696, 929 |
| BsiHKCI | CYCGRG | 1 cut(s) | 689 |
| BsiSI | CCGG | 8 cut(s) | 393, 541, 579, 659, 837, 874, 891, 901 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 45, 665 |
| BsmAI | GTCTC | 2 cut(s) | 449, 621 |
| BsmBI | CGTCTC | 1 cut(s) | 621 |
| BsnI | GGCC | 2 cut(s) | 890, 894 |
| BsoBI | CYCGRG | 1 cut(s) | 689 |
| Bsp1286I | GDGCHC | 5 cut(s) | 162, 237, 690, 696, 929 |
| Bsp143I | GATC | 7 cut(s) | 361, 879, 979, 1017, 1057, 1107, 1138 |
| BspACI | CCGC | 5 cut(s) | 175, 399, 550, 561, 904 |
| BspANI | GGCC | 2 cut(s) | 890, 894 |
| BspCNI | CTCAG | 3 cut(s) | 342, 445, 909 |
| BspFNI | CGCG | 2 cut(s) | 175, 552 |
| BspPI | GGATC | 2 cut(s) | 356, 974 |
| BsrFI | RCCGGY | 4 cut(s) | 392, 578, 890, 900 |
| BssAI | RCCGGY | 4 cut(s) | 392, 578, 890, 900 |
| BssECI | CCNNGG | 1 cut(s) | 1044 |
| BssMI | GATC | 7 cut(s) | 361, 879, 979, 1017, 1057, 1107, 1138 |
| BssNI | GRCGYC | 6 cut(s) | 497, 576, 591, 603, 614, 840 |
| BssT1I | CCWWGG | 1 cut(s) | 1044 |
| Bst2UI | CCWGG | 2 cut(s) | 46, 887 |
| Bst4CI | ACNGT | 1 cut(s) | 213 |
| Bst6I | CTCTTC | 1 cut(s) | 361 |
| BstACI | GRCGYC | 6 cut(s) | 497, 576, 591, 603, 614, 840 |
| BstC8I | GCNNGC | 6 cut(s) | 56, 74, 252, 394, 892, 902 |
| BstDEI | CTNAG | 3 cut(s) | 329, 453, 896 |
| BstF5I | GGATG | 2 cut(s) | 670, 1040 |
| BstFNI | CGCG | 2 cut(s) | 175, 552 |
| BstHHI | GCGC | 2 cut(s) | 250, 658 |
| BstKTI | GATC | 7 cut(s) | 364, 882, 982, 1020, 1060, 1110, 1141 |
| BstMAI | GTCTC | 2 cut(s) | 449, 621 |
| BstMBI | GATC | 7 cut(s) | 361, 879, 979, 1017, 1057, 1107, 1138 |
| BstMCI | CGRYCG | 1 cut(s) | 550 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 166, 175, 181, 402, 906 |
| BstNI | CCWGG | 2 cut(s) | 46, 887 |
| BstNSI | RCATGY | 1 cut(s) | 1071 |
| BstSCI | CCNGG | 3 cut(s) | 44, 835, 885 |
| BstUI | CGCG | 2 cut(s) | 175, 552 |
| BstV1I | GCAGC | 3 cut(s) | 383, 389, 836 |
| BstV2I | GAAGAC | 1 cut(s) | 839 |
| BstX2I | RGATCY | 1 cut(s) | 1057 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1051 |
| BstYI | RGATCY | 1 cut(s) | 1057 |
| BsuRI | GGCC | 2 cut(s) | 890, 894 |
| BtsCI | GGATG | 2 cut(s) | 670, 1040 |
| BtsI | GCAGTG | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 2 cut(s) | 196, 1143 |
| Cac8I | GCNNGC | 6 cut(s) | 56, 74, 252, 394, 892, 902 |
| CfoI | GCGC | 2 cut(s) | 250, 658 |
| Cfr10I | RCCGGY | 4 cut(s) | 392, 578, 890, 900 |
| Cfr13I | GGNCC | 1 cut(s) | 1155 |
| CseI | GACGC | 3 cut(s) | 584, 603, 829 |
| Csp6I | GTAC | 1 cut(s) | 1096 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 400, 435 |
| CviAII | CATG | 6 cut(s) | 67, 459, 569, 625, 1068, 1100 |
| CviQI | GTAC | 1 cut(s) | 1096 |
| DdeI | CTNAG | 3 cut(s) | 329, 453, 896 |
| DpnI | GATC | 7 cut(s) | 363, 881, 981, 1019, 1059, 1109, 1140 |
| DpnII | GATC | 7 cut(s) | 361, 879, 979, 1017, 1057, 1107, 1138 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 463, 596 |
| DriI | GACNNNNNGTC | 2 cut(s) | 496, 613 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 463, 596 |
| Eam1104I | CTCTTC | 1 cut(s) | 361 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 496, 613 |
| EarI | CTCTTC | 1 cut(s) | 361 |
| EciI | GGCGGA | 1 cut(s) | 919 |
| Ecl136II | GAGCTC | 4 cut(s) | 235, 688, 694, 927 |
| Eco130I | CCWWGG | 1 cut(s) | 1044 |
| Eco24I | GRGCYC | 5 cut(s) | 162, 237, 690, 696, 929 |
| Eco47I | GGWCC | 1 cut(s) | 1155 |
| Eco53kI | GAGCTC | 4 cut(s) | 235, 688, 694, 927 |
| Eco57I | CTGAAG | 1 cut(s) | 767 |
| Eco88I | CYCGRG | 1 cut(s) | 689 |
| EcoICRI | GAGCTC | 4 cut(s) | 235, 688, 694, 927 |
| EcoRI | GAATTC | 4 cut(s) | 536, 853, 919, 1084 |
| EcoRII | CCWGG | 2 cut(s) | 44, 885 |
| EcoT14I | CCWWGG | 1 cut(s) | 1044 |
| EcoT38I | GRGCYC | 5 cut(s) | 162, 237, 690, 696, 929 |
| ErhI | CCWWGG | 1 cut(s) | 1044 |
| Esp3I | CGTCTC | 1 cut(s) | 621 |
| FaeI | CATG | 6 cut(s) | 70, 462, 572, 628, 1071, 1103 |
| FaiI | YATR | 8 cut(s) | 32, 68, 460, 570, 626, 707, 1069, 1101 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 199, 231, 796, 828, 1047, 1079 |
| FatI | CATG | 6 cut(s) | 66, 458, 568, 624, 1067, 1099 |
| FbaI | TGATCA | 1 cut(s) | 1107 |
| FblI | GTMKAC | 3 cut(s) | 573, 600, 606 |
| Fnu4HI | GCNGC | 6 cut(s) | 176, 397, 400, 403, 561, 825 |
| FokI | GGATG | 2 cut(s) | 677, 1027 |
| FriOI | GRGCYC | 5 cut(s) | 162, 237, 690, 696, 929 |
| FseI | GGCCGGCC | 1 cut(s) | 894 |
| Fsp4HI | GCNGC | 6 cut(s) | 176, 397, 400, 403, 561, 825 |
| GlaI | GCGC | 2 cut(s) | 249, 657 |
| GluI | GCNGC | 6 cut(s) | 176, 397, 400, 403, 561, 825 |
| HaeIII | GGCC | 2 cut(s) | 890, 894 |
| HapII | CCGG | 8 cut(s) | 393, 541, 579, 659, 837, 874, 891, 901 |
| HgaI | GACGC | 3 cut(s) | 584, 603, 829 |
| HhaI | GCGC | 2 cut(s) | 250, 658 |
| Hin1I | GRCGYC | 6 cut(s) | 497, 576, 591, 603, 614, 840 |
| Hin1II | CATG | 6 cut(s) | 70, 462, 572, 628, 1071, 1103 |
| Hin6I | GCGC | 2 cut(s) | 248, 656 |
| HinP1I | GCGC | 2 cut(s) | 248, 656 |
| HincII | GTYRAC | 3 cut(s) | 574, 601, 607 |
| HindII | GTYRAC | 3 cut(s) | 574, 601, 607 |
| HinfI | GANTC | 4 cut(s) | 267, 422, 674, 1001 |
| HpaII | CCGG | 8 cut(s) | 393, 541, 579, 659, 837, 874, 891, 901 |
| HphI | GGTGA | 3 cut(s) | 229, 593, 748 |
| Hpy166II | GTNNAC | 3 cut(s) | 574, 601, 607 |
| Hpy188III | TCNNGA | 4 cut(s) | 331, 430, 515, 1132 |
| Hpy8I | GTNNAC | 3 cut(s) | 574, 601, 607 |
| Hpy99I | CGWCG | 8 cut(s) | 499, 521, 524, 578, 596, 605, 608, 919 |
| HpyAV | CCTTC | 4 cut(s) | 484, 798, 822, 930 |
| HpyCH4III | ACNGT | 1 cut(s) | 213 |
| HpyCH4IV | ACGT | 4 cut(s) | 497, 591, 603, 1116 |
| HpyCH4V | TGCA | 2 cut(s) | 824, 1067 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 166, 175, 181, 402, 906 |
| HpyF3I | CTNAG | 3 cut(s) | 329, 453, 896 |
| HpySE526I | ACGT | 4 cut(s) | 497, 591, 603, 1116 |
| Hsp92I | GRCGYC | 6 cut(s) | 497, 576, 591, 603, 614, 840 |
| Hsp92II | CATG | 6 cut(s) | 70, 462, 572, 628, 1071, 1103 |
| HspAI | GCGC | 2 cut(s) | 248, 656 |
| KroI | GCCGGC | 3 cut(s) | 392, 890, 900 |
| KroNI | GCCGGC | 3 cut(s) | 394, 892, 902 |
| Ksp22I | TGATCA | 1 cut(s) | 1107 |
| Kzo9I | GATC | 7 cut(s) | 361, 879, 979, 1017, 1057, 1107, 1138 |
| LmnI | GCTCC | 4 cut(s) | 699, 780, 906, 939 |
| Lsp1109I | GCAGC | 3 cut(s) | 383, 389, 836 |
| LweI | GCATC | 3 cut(s) | 643, 951, 1049 |
| MaeII | ACGT | 4 cut(s) | 497, 591, 603, 1116 |
| MalI | GATC | 7 cut(s) | 363, 881, 981, 1019, 1059, 1109, 1140 |
| MboI | GATC | 7 cut(s) | 361, 879, 979, 1017, 1057, 1107, 1138 |
| MfeI | CAATTG | 1 cut(s) | 960 |
| MflI | RGATCY | 1 cut(s) | 1057 |
| MhlI | GDGCHC | 5 cut(s) | 162, 237, 690, 696, 929 |
| MmeI | TCCRAC | 4 cut(s) | 339, 651, 894, 972 |
| MroNI | GCCGGC | 3 cut(s) | 392, 890, 900 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1059 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1115 |
| MspI | CCGG | 8 cut(s) | 393, 541, 579, 659, 837, 874, 891, 901 |
| MspR9I | CCNGG | 3 cut(s) | 46, 837, 887 |
| MunI | CAATTG | 1 cut(s) | 960 |
| MvaI | CCWGG | 2 cut(s) | 46, 887 |
| MvnI | CGCG | 2 cut(s) | 175, 552 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 166, 175, 181, 402, 906 |
| NaeI | GCCGGC | 3 cut(s) | 394, 892, 902 |
| NciI | CCSGG | 1 cut(s) | 837 |
| NdeII | GATC | 7 cut(s) | 361, 879, 979, 1017, 1057, 1107, 1138 |
| NgoMIV | GCCGGC | 3 cut(s) | 392, 890, 900 |
| NlaIII | CATG | 6 cut(s) | 70, 462, 572, 628, 1071, 1103 |
| NmeAIII | GCCGAG | 1 cut(s) | 885 |
| NspI | RCATGY | 1 cut(s) | 1071 |
| PaeR7I | CTCGAG | 1 cut(s) | 689 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 597, 600, 920 |
| PdiI | GCCGGC | 3 cut(s) | 394, 892, 902 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1059 |
| PfeI | GAWTC | 4 cut(s) | 267, 422, 674, 1001 |
| PflFI | GACNNNGTC | 1 cut(s) | 460 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 45 |
| PkrI | GCNGC | 6 cut(s) | 177, 398, 401, 404, 562, 826 |
| PsiI | TTATAA | 1 cut(s) | 707 |
| Psp124BI | GAGCTC | 4 cut(s) | 237, 690, 696, 929 |
| Psp6I | CCWGG | 2 cut(s) | 44, 885 |
| PspGI | CCWGG | 2 cut(s) | 44, 885 |
| PspPI | GGNCC | 1 cut(s) | 1155 |
| PspXI | VCTCGAGB | 1 cut(s) | 689 |
| PsuI | RGATCY | 1 cut(s) | 1057 |
| PsyI | GACNNNGTC | 1 cut(s) | 460 |
| RigI | GGCCGGCC | 1 cut(s) | 894 |
| RsaI | GTAC | 1 cut(s) | 1097 |
| RsaNI | GTAC | 1 cut(s) | 1096 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1115 |
| SacI | GAGCTC | 4 cut(s) | 237, 690, 696, 929 |
| SalI | GTCGAC | 3 cut(s) | 572, 599, 605 |
| SatI | GCNGC | 6 cut(s) | 176, 397, 400, 403, 561, 825 |
| Sau3AI | GATC | 7 cut(s) | 361, 879, 979, 1017, 1057, 1107, 1138 |
| Sau96I | GGNCC | 1 cut(s) | 1155 |
| ScrFI | CCNGG | 3 cut(s) | 46, 837, 887 |
| SduI | GDGCHC | 5 cut(s) | 162, 237, 690, 696, 929 |
| SfaNI | GCATC | 3 cut(s) | 643, 951, 1049 |
| Sfr274I | CTCGAG | 1 cut(s) | 689 |
| SgrAI | CRCCGGYG | 1 cut(s) | 578 |
| SinI | GGWCC | 1 cut(s) | 1155 |
| SlaI | CTCGAG | 1 cut(s) | 689 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1115 |
| SmlI | CTYRAG | 1 cut(s) | 689 |
| SmoI | CTYRAG | 1 cut(s) | 689 |
| SsiI | CCGC | 5 cut(s) | 175, 399, 550, 561, 904 |
| SstI | GAGCTC | 4 cut(s) | 237, 690, 696, 929 |
| StyD4I | CCNGG | 3 cut(s) | 44, 835, 885 |
| StyI | CCWWGG | 1 cut(s) | 1044 |
| TaaI | ACNGT | 1 cut(s) | 213 |
| TaiI | ACGT | 4 cut(s) | 500, 594, 606, 1119 |
| TauI | GCSGC | 3 cut(s) | 178, 402, 563 |
| TfiI | GAWTC | 4 cut(s) | 267, 422, 674, 1001 |
| TscAI | CASTG | 2 cut(s) | 203, 1150 |
| TseI | GCWGC | 3 cut(s) | 396, 402, 824 |
| TspDTI | ATGAA | 2 cut(s) | 641, 804 |
| TspGWI | ACGGA | 2 cut(s) | 415, 833 |
| TspRI | CASTG | 2 cut(s) | 203, 1150 |
| Tth111I | GACNNNGTC | 1 cut(s) | 460 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 45 |
| VpaK11BI | GGWCC | 1 cut(s) | 1155 |
| XapI | RAATTY | 7 cut(s) | 148, 536, 722, 853, 864, 919, 1084 |
| XceI | RCATGY | 1 cut(s) | 1071 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 456 |
| XhoI | CTCGAG | 1 cut(s) | 689 |
| XmiI | GTMKAC | 3 cut(s) | 573, 600, 606 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1059 |
| ZraI | GACGTC | 3 cut(s) | 498, 592, 604 |