Prupe.6G290900_v2.0.a1

DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013954
Physical Location & Seq
Forward (+)
26842544 .. 26844228
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G290900.1

Sequence Viewer

Length: 1326 bp
ATGGGTAACCACAAGTTTAGATTATCAGATATGATGCCCAATGCCTGGTTTCACAAGCTCAAAGACATGAGCAAACCCAGAAAAAACCCCAACAGCCCTCATCCCTCCAAGAAGAAAAAACAACAGCAAAAACCAACATTTGCTTCAACTGCAAAATTTACAGAGCCATCAAAACCAAAGCAGCAGCTACCCCACCAATGTCTTCCAAGACAGTCTTACTACTTCACAAGGGAGCTTACTAGCGCTGCCCCAGGTCACAGGTTCTGCAGCTCCTCCCCCACAAACCCAAAAGCCTCAGACACCAATTTCCCTGACCCACCACCCAAAAAACCATCCAAACAAAAACCCAAGAAGAGAATTACCAGCTTACCCTCTGATCCTCACCTTGTCACCTCCTCTGTTTCTGCCGGCTGTGGCTGCCGCGCCCCCATTGAATCCGTTTGGACTAAATCTGATTCCCCACCAGAGCTCTGGTCTTCTTCAACCTTGGACAGCTCCCCAGAGCCAGAGTCTCATGATGAAGACGATGGTGAGCTTGAGCTTCATGAGCCTGAATTCAGGTGTGACCGTGTTCTTGCTACCGAGACTTTTGATGGGATGGTTTCAATGTCGAGTTCATGCGCTGCTTACCTTGCTGATTCTGAGGAAAAAGACGTCGTTATCGACGTGGATAAGGCATCTCTGAGTATGAAATTATCTGATGTGAAACTATCTGATATGGCTGATAATGGGTTGTATTCATTTTCTGAGCTTGAGCTTGCTCCAATTATAACCAAGCCACCGAAATTCAGTGAAATGGTGAGAGATGTGAAGAAGAAGAAAGAGACAAAAGAGCCAAGCAGATGCAGAAGAAGCTCAGCTAAATTTCAGGATAGAAATGCACACGGGTCTCTGTCTGTCAAGGTTGCGAAGGAAGAGAGCACAAGCACAAAAACCATCAAAGAACAGAGGACAGCTAGCTCTGTTAGAAGAGTTTCATCAAATGCTACTTCTCCAGGAGTTAGGCTTCGGATGAATTCACCAAGAATTGCTAACAGGAAGATCAACCAGGCCAATCTCAGCCGTCGGAGTGTGTCATCAAACTCGAGCTCAAAGCGGAGGAGCCTCTCTGAAAGCTTTGCAATTGTCAAGTCTTCATTTGACCCTCAGAGGGATTTCAGGGAGTCAATGGTGGAGATGATTATGGAGAACAACATCAAGGCATCAAAGGACTTGGAAGATCTTCTTGCATGTTATCTCTCTTTGAACTCAGATGAATATCACGAGCTCATCATCAAGGTCTTCAAGCAAATCTGGTTTGATCTCACTGACCTCAGGTCCAAGTAA

Protein Analysis

442

Amino Acids

49.66

Weight (kDa)

9.35

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013954)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01840
fragaria_vesca FvH4_6g10140
malus_domestica MD04G1172500.v1.1 MD12G1185700.v1.1
prunus_persica Prupe.6G290900_v2.0.a1
pyrus_communis pycom04g15240 pycom12g17430
rosa_chinensis RchiOBHm_Chr3g0460841
rosa_laevigata RLG00000024975
rosa_multiflora Rmu_sc0004055.1_g000001
rosa_roxburghii Rroxscaffold_6G00419170
rosa_rugosa Rorug03G0046900.1
rosa_samantha Rh3AG104000 Rh3BG107600 Rh3CG109500 Rh3DG109500
rosa_wichuraiana Rw3G008850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
AatII GACGTC 1 cut(s) 657
AccB7I CCANNNNNTGG 1 cut(s) 45
AccII CGCG 1 cut(s) 423
AciI CCGC 2 cut(s) 421, 1096
AclWI GGATC 1 cut(s) 371
AcsI RAATTY 5 cut(s) 155, 554, 785, 863, 1015
AcyI GRCGYC 1 cut(s) 654
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 45, 1150
AgsI TTSAA 6 cut(s) 147, 434, 483, 606, 1246, 1285
AhdI GACNNNNNGTC 1 cut(s) 1315
AjiI CACGTC 1 cut(s) 667
AjnI CCWGG 4 cut(s) 44, 250, 994, 1047
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
Alw21I GWGCWC 4 cut(s) 471, 923, 1091, 1269
Alw26I GTCTC 4 cut(s) 516, 578, 818, 894
AlwI GGATC 1 cut(s) 371
AlwNI CAGNNNCTG 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 1084
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 1 cut(s) 1050
ApeKI GCWGC 6 cut(s) 181, 184, 245, 267, 417, 623
ApoI RAATTY 5 cut(s) 155, 554, 785, 863, 1015
Asp700I GAANNNNTTC 2 cut(s) 973, 1221
AspLEI GCGC 3 cut(s) 245, 425, 623
AspS9I GGNCC 1 cut(s) 1317
AsuHPI GGTGA 5 cut(s) 374, 382, 542, 811, 1011
AsuNHI GCTAGC 1 cut(s) 956
AvaI CYCGRG 1 cut(s) 1084
AvaII GGWCC 1 cut(s) 1317
AxyI CCTNAGG 1 cut(s) 1313
BanII GRGCYC 3 cut(s) 471, 1091, 1269
BauI CACGAG 1 cut(s) 1262
BbsI GAAGAC 5 cut(s) 194, 468, 528, 1125, 1273
Bbv12I GWGCWC 4 cut(s) 471, 923, 1091, 1269
BbvI GCAGC 6 cut(s) 193, 196, 232, 279, 404, 610
BccI CCATC 6 cut(s) 175, 340, 521, 587, 592, 944
BceAI ACGGC 1 cut(s) 1047
BciT130I CCWGG 4 cut(s) 46, 252, 996, 1049
BcoDI GTCTC 4 cut(s) 516, 578, 818, 894
BfaI CTAG 2 cut(s) 240, 957
BfmI CTRYAG 1 cut(s) 265
BfoI RGCGCY 1 cut(s) 246
BglII AGATCT 1 cut(s) 1219
BisI GCNGC 7 cut(s) 182, 185, 246, 268, 418, 421, 624
BlpI GCTNAGC 1 cut(s) 856
BlsI GCNGC 7 cut(s) 183, 186, 247, 269, 419, 422, 625
Bme1390I CCNGG 4 cut(s) 46, 252, 996, 1049
Bme18I GGWCC 1 cut(s) 1317
BmeRI GACNNNNNGTC 1 cut(s) 1315
BmeT110I CYCGRG 1 cut(s) 1084
BmgBI CACGTC 1 cut(s) 667
BmgT120I GGNCC 1 cut(s) 1317
BmiI GGNNCC 1 cut(s) 1103
BmrFI CCNGG 4 cut(s) 46, 252, 996, 1049
BmsI GCATC 4 cut(s) 24, 686, 833, 1211
BmtI GCTAGC 1 cut(s) 960
BpiI GAAGAC 5 cut(s) 194, 468, 528, 1125, 1273
BpmI CTGGAG 1 cut(s) 978
Bpu1102I GCTNAGC 1 cut(s) 856
BpuEI CTTGAG 2 cut(s) 557, 773
BsaBI GATNNNNATC 1 cut(s) 1257
BsaHI GRCGYC 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 2 cut(s) 250, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 1150
Bse118I RCCGGY 1 cut(s) 407
Bse21I CCTNAGG 1 cut(s) 1313
Bse8I GATNNNNATC 1 cut(s) 1257
BseBI CCWGG 4 cut(s) 46, 252, 996, 1049
BseDI CCNNGG 2 cut(s) 250, 486
BseGI GGATG 4 cut(s) 100, 332, 603, 1017
BseJI GATNNNNATC 1 cut(s) 1257
BseLI CCNNNNNNNGG 2 cut(s) 45, 1150
BseMII CTCAG 8 cut(s) 309, 633, 674, 738, 870, 1072, 1160, 1263
BseRI GAGGAG 3 cut(s) 262, 385, 1114
BseXI GCAGC 6 cut(s) 193, 196, 232, 279, 404, 610
Bsh1236I CGCG 1 cut(s) 423
BshFI GGCC 1 cut(s) 1052
BsiHKAI GWGCWC 4 cut(s) 471, 923, 1091, 1269
BsiHKCI CYCGRG 1 cut(s) 1084
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 45, 1150
BsmAI GTCTC 4 cut(s) 516, 578, 818, 894
BsnI GGCC 1 cut(s) 1052
Bso31I GGTCTC 1 cut(s) 894
BsoBI CYCGRG 1 cut(s) 1084
Bsp1286I GDGCHC 4 cut(s) 471, 923, 1091, 1269
Bsp143I GATC 4 cut(s) 376, 1041, 1219, 1300
Bsp1720I GCTNAGC 1 cut(s) 856
BspACI CCGC 2 cut(s) 421, 1096
BspANI GGCC 1 cut(s) 1052
BspCNI CTCAG 9 cut(s) 308, 634, 675, 739, 869, 1071, 1159, 1262, 1326
BspFNI CGCG 1 cut(s) 423
BspHI TCATGA 2 cut(s) 514, 544
BspLI GGNNCC 1 cut(s) 1103
BspMAI CTGCAG 1 cut(s) 269
BspOI GCTAGC 1 cut(s) 960
BspPI GGATC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 894
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 250, 486
BssMI GATC 4 cut(s) 376, 1041, 1219, 1300
BssNI GRCGYC 1 cut(s) 654
BssSI CACGAG 1 cut(s) 1262
BssT1I CCWWGG 1 cut(s) 486
Bst2BI CACGAG 1 cut(s) 1262
Bst2UI CCWGG 4 cut(s) 46, 252, 996, 1049
Bst4CI ACNGT 2 cut(s) 213, 569
Bst6I CTCTTC 3 cut(s) 347, 909, 964
BstACI GRCGYC 1 cut(s) 654
BstC8I GCNNGC 3 cut(s) 409, 759, 958
BstDEI CTNAG 9 cut(s) 295, 642, 683, 747, 856, 1058, 1146, 1249, 1313
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 4 cut(s) 100, 332, 603, 1017
BstFNI CGCG 1 cut(s) 423
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 3 cut(s) 245, 425, 623
BstKTI GATC 4 cut(s) 379, 1044, 1222, 1303
BstMAI GTCTC 4 cut(s) 516, 578, 818, 894
BstMBI GATC 4 cut(s) 376, 1041, 1219, 1300
BstMWI GCNNNNNNNGC 5 cut(s) 149, 417, 547, 632, 852
BstNI CCWGG 4 cut(s) 46, 252, 996, 1049
BstNSI RCATGY 1 cut(s) 1233
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 4 cut(s) 44, 250, 994, 1047
BstSFI CTRYAG 1 cut(s) 265
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 6 cut(s) 193, 196, 232, 279, 404, 610
BstV2I GAAGAC 5 cut(s) 194, 468, 528, 1125, 1273
BstX2I RGATCY 1 cut(s) 1219
BstXI CCANNNNNNTGG 1 cut(s) 471
BstYI RGATCY 1 cut(s) 1219
Bsu36I CCTNAGG 1 cut(s) 1313
BsuRI GGCC 1 cut(s) 1052
BtrI CACGTC 1 cut(s) 667
BtsCI GGATG 4 cut(s) 100, 332, 603, 1017
BtsIMutI CAGTG 2 cut(s) 796, 1305
Cac8I GCNNGC 3 cut(s) 409, 759, 958
CaiI CAGNNNCTG 1 cut(s) 264
CciI TCATGA 2 cut(s) 514, 544
CfoI GCGC 3 cut(s) 245, 425, 623
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 1317
CviAII CATG 5 cut(s) 67, 515, 545, 618, 1230
DdeI CTNAG 9 cut(s) 295, 642, 683, 747, 856, 1058, 1146, 1249, 1313
DpnI GATC 4 cut(s) 378, 1043, 1221, 1302
DpnII GATC 4 cut(s) 376, 1041, 1219, 1300
DriI GACNNNNNGTC 1 cut(s) 1315
Eam1104I CTCTTC 3 cut(s) 347, 909, 964
Eam1105I GACNNNNNGTC 1 cut(s) 1315
EarI CTCTTC 3 cut(s) 347, 909, 964
Ecl136II GAGCTC 3 cut(s) 469, 1089, 1267
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 3 cut(s) 471, 1091, 1269
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 1 cut(s) 1317
Eco47III AGCGCT 1 cut(s) 244
Eco53kI GAGCTC 3 cut(s) 469, 1089, 1267
Eco81I CCTNAGG 1 cut(s) 1313
Eco88I CYCGRG 1 cut(s) 1084
Eco91I GGTNACC 1 cut(s) 5
EcoICRI GAGCTC 3 cut(s) 469, 1089, 1267
EcoO65I GGTNACC 1 cut(s) 5
EcoRI GAATTC 2 cut(s) 554, 1015
EcoRII CCWGG 4 cut(s) 44, 250, 994, 1047
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 3 cut(s) 471, 1091, 1269
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 5 cut(s) 70, 518, 548, 621, 1233
FalI AAGNNNNNCTT 4 cut(s) 199, 231, 1209, 1241
FatI CATG 5 cut(s) 66, 514, 544, 617, 1229
Fnu4HI GCNGC 7 cut(s) 182, 185, 246, 268, 418, 421, 624
FokI GGATG 4 cut(s) 87, 319, 610, 1024
FriOI GRGCYC 3 cut(s) 471, 1091, 1269
Fsp4HI GCNGC 7 cut(s) 182, 185, 246, 268, 418, 421, 624
FspBI CTAG 2 cut(s) 240, 957
GlaI GCGC 3 cut(s) 244, 424, 622
GluI GCNGC 7 cut(s) 182, 185, 246, 268, 418, 421, 624
GsuI CTGGAG 1 cut(s) 978
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 1052
HapII CCGG 1 cut(s) 408
HhaI GCGC 3 cut(s) 245, 425, 623
Hin1I GRCGYC 1 cut(s) 654
Hin1II CATG 5 cut(s) 70, 518, 548, 621, 1233
Hin6I GCGC 3 cut(s) 243, 423, 621
HinP1I GCGC 3 cut(s) 243, 423, 621
HindIII AAGCTT 1 cut(s) 1114
HinfI GANTC 5 cut(s) 434, 455, 509, 638, 1163
HpaII CCGG 1 cut(s) 408
HphI GGTGA 5 cut(s) 374, 382, 542, 811, 1011
Hpy188III TCNNGA 4 cut(s) 515, 545, 869, 1262
Hpy99I CGWCG 3 cut(s) 659, 668, 1068
HpyAV CCTTC 1 cut(s) 904
HpyCH4III ACNGT 2 cut(s) 213, 569
HpyCH4IV ACGT 2 cut(s) 654, 666
HpyCH4V TGCA 6 cut(s) 152, 267, 846, 881, 1121, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 417, 547, 632, 852
HpyF3I CTNAG 9 cut(s) 295, 642, 683, 747, 856, 1058, 1146, 1249, 1313
HpySE526I ACGT 2 cut(s) 654, 666
Hsp92I GRCGYC 1 cut(s) 654
Hsp92II CATG 5 cut(s) 70, 518, 548, 621, 1233
HspAI GCGC 3 cut(s) 243, 423, 621
KroI GCCGGC 1 cut(s) 407
KroNI GCCGGC 1 cut(s) 409
Kzo9I GATC 4 cut(s) 376, 1041, 1219, 1300
LmnI GCTCC 5 cut(s) 232, 275, 500, 766, 1101
Lsp1109I GCAGC 6 cut(s) 193, 196, 232, 279, 404, 610
LweI GCATC 4 cut(s) 24, 686, 833, 1211
MaeI CTAG 2 cut(s) 240, 957
MaeII ACGT 2 cut(s) 654, 666
MaeIII GTNAC 4 cut(s) 5, 254, 388, 563
MalI GATC 4 cut(s) 378, 1043, 1221, 1302
MboI GATC 4 cut(s) 376, 1041, 1219, 1300
MfeI CAATTG 1 cut(s) 1122
MflI RGATCY 1 cut(s) 1219
MhlI GDGCHC 4 cut(s) 471, 923, 1091, 1269
MlyI GAGTC 2 cut(s) 518, 1172
MmeI TCCRAC 1 cut(s) 1046
MroNI GCCGGC 1 cut(s) 407
MroXI GAANNNNTTC 2 cut(s) 973, 1221
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 4 cut(s) 46, 252, 996, 1049
MunI CAATTG 1 cut(s) 1122
MvaI CCWGG 4 cut(s) 46, 252, 996, 1049
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 5 cut(s) 149, 417, 547, 632, 852
NaeI GCCGGC 1 cut(s) 409
NdeII GATC 4 cut(s) 376, 1041, 1219, 1300
NgoMIV GCCGGC 1 cut(s) 407
NheI GCTAGC 1 cut(s) 956
NlaIII CATG 5 cut(s) 70, 518, 548, 621, 1233
NlaIV GGNNCC 1 cut(s) 1103
NmuCI GTSAC 3 cut(s) 254, 388, 563
NspI RCATGY 1 cut(s) 1233
PaeR7I CTCGAG 1 cut(s) 1084
PagI TCATGA 2 cut(s) 514, 544
PcsI WCGNNNNNNNCGW 2 cut(s) 660, 663
PdiI GCCGGC 1 cut(s) 409
PdmI GAANNNNTTC 2 cut(s) 973, 1221
PfeI GAWTC 3 cut(s) 434, 455, 638
PflMI CCANNNNNTGG 1 cut(s) 45
PfoI TCCNGGA 1 cut(s) 994
PkrI GCNGC 7 cut(s) 183, 186, 247, 269, 419, 422, 625
PleI GAGTC 2 cut(s) 517, 1171
PpsI GAGTC 2 cut(s) 517, 1171
PsiI TTATAA 1 cut(s) 770
Psp124BI GAGCTC 3 cut(s) 471, 1091, 1269
Psp6I CCWGG 4 cut(s) 44, 250, 994, 1047
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 4 cut(s) 44, 250, 994, 1047
PspN4I GGNNCC 1 cut(s) 1103
PspPI GGNCC 1 cut(s) 1317
PspXI VCTCGAGB 1 cut(s) 1084
PstI CTGCAG 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 264
PsuI RGATCY 1 cut(s) 1219
SacI GAGCTC 3 cut(s) 471, 1091, 1269
SatI GCNGC 7 cut(s) 182, 185, 246, 268, 418, 421, 624
Sau3AI GATC 4 cut(s) 376, 1041, 1219, 1300
Sau96I GGNCC 1 cut(s) 1317
SchI GAGTC 2 cut(s) 518, 1172
ScrFI CCNGG 4 cut(s) 46, 252, 996, 1049
SduI GDGCHC 4 cut(s) 471, 923, 1091, 1269
SfaNI GCATC 4 cut(s) 24, 686, 833, 1211
SfcI CTRYAG 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 1084
SinI GGWCC 1 cut(s) 1317
SlaI CTCGAG 1 cut(s) 1084
SmlI CTYRAG 3 cut(s) 536, 752, 1084
SmoI CTYRAG 3 cut(s) 536, 752, 1084
SsiI CCGC 2 cut(s) 421, 1096
SspMI CTAG 2 cut(s) 240, 957
SstI GAGCTC 3 cut(s) 471, 1091, 1269
StyD4I CCNGG 4 cut(s) 44, 250, 994, 1047
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 2 cut(s) 213, 569
TaiI ACGT 2 cut(s) 657, 669
TaqI TCGA 3 cut(s) 611, 663, 1085
TauI GCSGC 1 cut(s) 423
TfiI GAWTC 3 cut(s) 434, 455, 638
TscAI CASTG 2 cut(s) 796, 1312
TseFI GTSAC 3 cut(s) 254, 388, 563
TseI GCWGC 6 cut(s) 181, 184, 245, 267, 417, 623
Tsp45I GTSAC 3 cut(s) 254, 388, 563
TspDTI ATGAA 9 cut(s) 533, 534, 606, 704, 729, 966, 1028, 1125, 1269
TspGWI ACGGA 1 cut(s) 427
TspRI CASTG 2 cut(s) 796, 1312
Van91I CCANNNNNTGG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 1317
XapI RAATTY 5 cut(s) 155, 554, 785, 863, 1015
XceI RCATGY 1 cut(s) 1233
XcmI CCANNNNNNNNNTGG 1 cut(s) 468
XhoI CTCGAG 1 cut(s) 1084
XmnI GAANNNNTTC 2 cut(s) 973, 1221
XspI CTAG 2 cut(s) 240, 957
ZraI GACGTC 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.