Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013954

Physical Location & Seq

Genomic Coordinates Reverse (-)

6012437 .. 6015510

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGTAAGTACAAGTTTAGATTATCCGATATGATACCCAATGCCTGGTTTTACAAGCTCAAAGACATGAGCAAAACCAGAAAGAACCAGAGCAGCAATTCTCATCCCAAGAAGAGAAACCAACCACCACCATCCACATTTGCTTCTTCAGCAAAACCAACAAGCCCAGCAAAGCCAAAGCAGGTCACCCATCACAACCACCATTGTCATCACTCAAGAAAGTCGTACTACTTCACAAGGGAGCTGAATAACTCCACAGGTGAGAACAGACCACTGTGCAACACCCCTGTAAACCCCAAAGTCTCCACCACCAATTTGACTCATGAGCCACCAAGAAAATCTTCTATACAAAAACAGAGGAAGAGTTCTAATTCCAAGCTTGCCATGTCGACTAGCTCCTCTGTTTCTGCAGGGTGTCGGGCCTCCATCGAATCCGTCTGGACCAAATCGGATTCTCTACCGGAGGAACAGCTCTGGTCTACTTCTTCGTCTCTCGACAGCTCCGAGCTTGAGTTTCATCACACCGACTCTCTTGAATTCAGATGTGACCGTATTCTTGCTACAGAGACATTTGATGGTATGAATTCTATGACGAGTTCTAATGAGAAAGACATCATCATCGACGTGGACAACTCCTCTGAGAAGAAGAAACTTGATTCGTTCTCTGATCTTGAGCTTCCTCGGATTATAACCAAGCCGGAAAGCTTCAATGAAATGGTGTGTGAGGTCAAGAAGAAGAAGAAAGAGAACAAGGAGCAGCAGCCAATCAAATCCAGGAAAAGCTCACATGGATCAGAGAACAACAAAGAGCATCGTACGAGTTCTGTTAGAAGAGTTACTTCGAGCACTTCACCGGGAGTTAAGCTTCGGACTAATTCTCCGAGAATTGCAAACCGGAAAATAAACCAGGCCCAAGTCGGACGCCGGAGTCTGTCGTCGAATTCGAGCTCAAAGAGGAGGAGTCTCTCGGAAAGCTTTGCAATTGTCAAGTCCTCATTTGATCCTCAAAGGGATTTCAGGGAATCAATGATAGAGATGATCATGGAGAACAACATCAAGGCATCGAAGGACTTGGAAGATCTTCTTGCATGTTATCTTTCTCTGAATGCAAATGAATACCATGAGCTCATCATCAAGGTCTTCAAGCAAATCTGGTTTGATCTCACTGACATCCAGTCAAAAGGTTTCTCTGGCAGTTCGTTCTTCAGCACTCCCATTCTGGAAAAGCTCTACCTTTGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_binding_2 Ovate

Protein Analysis

415

Amino Acids

47.27

Weight (kDa)

9.68

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_binding_2	PF13724	1 - 41	4.3e-19	DNA-binding domain
Ovate	PF04844	332 - 388	1.2e-24	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01840
fragaria_vesca	FvH4_6g10140
malus_domestica	MD04G1172500.v1.1 MD12G1185700.v1.1
prunus_persica	Prupe.6G290900_v2.0.a1
pyrus_communis	pycom04g15240 pycom12g17430
rosa_chinensis	RchiOBHm_Chr3g0460841
rosa_laevigata	RLG00000024975
rosa_multiflora	Rmu_sc0004055.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419170
rosa_rugosa	Rorug03G0046900.1
rosa_samantha	Rh3AG104000 Rh3BG107600 Rh3CG109500 Rh3DG109500
rosa_wichuraiana	Rw3G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
AasI	GACNNNNNNGTC	1 cut(s)	927
Acc36I	ACCTGC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	45
AccI	GTMKAC	2 cut(s)	389, 479
AclWI	GGATC	2 cut(s)	799, 995
AcsI	RAATTY	3 cut(s)	536, 583, 940
AcuI	CTGAAG	2 cut(s)	132, 1189
AcyI	GRCGYC	1 cut(s)	922
AfaI	GTAC	3 cut(s)	11, 227, 817
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	536, 709, 1144
AhdI	GACNNNNNGTC	1 cut(s)	1174
AjiI	CACGTC	1 cut(s)	625
AjnI	CCWGG	3 cut(s)	44, 773, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
Alw21I	GWGCWC	3 cut(s)	848, 950, 1128
Alw26I	GTCTC	4 cut(s)	307, 495, 560, 968
AlwI	GGATC	2 cut(s)	799, 995
AoxI	GGCC	2 cut(s)	420, 909
ApeKI	GCWGC	3 cut(s)	93, 757, 760
ApoI	RAATTY	3 cut(s)	536, 583, 940
Asp700I	GAANNNNTTC	2 cut(s)	340, 1080
AspS9I	GGNCC	3 cut(s)	420, 441, 910
AsuC2I	CCSGG	1 cut(s)	855
AsuHPI	GGTGA	3 cut(s)	178, 272, 843
AvaII	GGWCC	1 cut(s)	441
BanII	GRGCYC	2 cut(s)	950, 1128
BbsI	GAAGAC	1 cut(s)	1132
Bbv12I	GWGCWC	3 cut(s)	848, 950, 1128
BbvI	GCAGC	3 cut(s)	105, 769, 772
BccI	CCATC	4 cut(s)	139, 198, 434, 569
BciT130I	CCWGG	3 cut(s)	46, 775, 908
BclI	TGATCA	1 cut(s)	1038
BcnI	CCSGG	1 cut(s)	855
BcoDI	GTCTC	4 cut(s)	307, 495, 560, 968
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	2 cut(s)	408, 561
BfuAI	ACCTGC	1 cut(s)	172
BglII	AGATCT	1 cut(s)	1078
BisI	GCNGC	3 cut(s)	94, 758, 761
BlsI	GCNGC	3 cut(s)	95, 759, 762
Bme1390I	CCNGG	4 cut(s)	46, 775, 855, 908
Bme18I	GGWCC	1 cut(s)	441
BmeRI	GACNNNNNGTC	1 cut(s)	1174
BmgBI	CACGTC	1 cut(s)	625
BmgT120I	GGNCC	3 cut(s)	420, 441, 910
BmrFI	CCNGG	4 cut(s)	46, 775, 855, 908
BmsI	GCATC	2 cut(s)	820, 1070
BpiI	GAAGAC	1 cut(s)	1132
BpuEI	CTTGAG	3 cut(s)	199, 530, 692
BpuMI	CCSGG	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	922
BsaJI	CCNNGG	1 cut(s)	680
BsaWI	WCCGGW	2 cut(s)	460, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	862, 892
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	1174
BseBI	CCWGG	3 cut(s)	46, 775, 908
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	3 cut(s)	103, 131, 1170
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	1 cut(s)	1174
BseRI	GAGGAG	4 cut(s)	388, 625, 970, 973
BseXI	GCAGC	3 cut(s)	105, 769, 772
BseYI	CCCAGC	1 cut(s)	166
BshFI	GGCC	2 cut(s)	422, 911
BsiHKAI	GWGCWC	3 cut(s)	848, 950, 1128
BsiSI	CCGG	5 cut(s)	461, 698, 854, 895, 925
BsiWI	CGTACG	1 cut(s)	815
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	4 cut(s)	307, 495, 560, 968
BsmBI	CGTCTC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	1111
BsnI	GGCC	2 cut(s)	422, 911
Bsp1286I	GDGCHC	3 cut(s)	848, 950, 1128
Bsp143I	GATC	6 cut(s)	667, 791, 1000, 1038, 1078, 1159
BspANI	GGCC	2 cut(s)	422, 911
BspCNI	CTCAG	1 cut(s)	631
BspHI	TCATGA	1 cut(s)	322
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	2 cut(s)	799, 995
BsrI	ACTGG	1 cut(s)	1174
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	6 cut(s)	667, 791, 1000, 1038, 1078, 1159
BssNI	GRCGYC	1 cut(s)	922
Bst2UI	CCWGG	3 cut(s)	46, 775, 908
Bst4CI	ACNGT	2 cut(s)	276, 551
Bst6I	CTCTTC	3 cut(s)	107, 356, 826
BstACI	GRCGYC	1 cut(s)	922
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	639
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	3 cut(s)	103, 131, 1170
BstKTI	GATC	6 cut(s)	670, 794, 1003, 1041, 1081, 1162
BstMAI	GTCTC	4 cut(s)	307, 495, 560, 968
BstMBI	GATC	6 cut(s)	667, 791, 1000, 1038, 1078, 1159
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	3 cut(s)	46, 775, 908
BstNSI	RCATGY	1 cut(s)	1092
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	4 cut(s)	44, 773, 853, 906
BstSFI	CTRYAG	2 cut(s)	408, 561
BstV1I	GCAGC	3 cut(s)	105, 769, 772
BstV2I	GAAGAC	1 cut(s)	1132
BstX2I	RGATCY	1 cut(s)	1078
BstYI	RGATCY	1 cut(s)	1078
BsuRI	GGCC	2 cut(s)	422, 911
BtrI	CACGTC	1 cut(s)	625
BtsCI	GGATG	3 cut(s)	103, 131, 1170
BtsIMutI	CAGTG	2 cut(s)	272, 1164
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	1 cut(s)	322
Cfr13I	GGNCC	3 cut(s)	420, 441, 910
CseI	GACGC	1 cut(s)	930
Csp6I	GTAC	3 cut(s)	10, 226, 816
CviAII	CATG	7 cut(s)	67, 323, 385, 788, 1042, 1089, 1121
CviQI	GTAC	3 cut(s)	10, 226, 816
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	6 cut(s)	669, 793, 1002, 1040, 1080, 1161
DpnII	GATC	6 cut(s)	667, 791, 1000, 1038, 1078, 1159
DrdI	GACNNNNNNGTC	1 cut(s)	927
DriI	GACNNNNNGTC	1 cut(s)	1174
DseDI	GACNNNNNNGTC	1 cut(s)	927
Eam1104I	CTCTTC	3 cut(s)	107, 356, 826
Eam1105I	GACNNNNNGTC	1 cut(s)	1174
EarI	CTCTTC	3 cut(s)	107, 356, 826
Ecl136II	GAGCTC	2 cut(s)	948, 1126
Eco24I	GRGCYC	2 cut(s)	950, 1128
Eco47I	GGWCC	1 cut(s)	441
Eco53kI	GAGCTC	2 cut(s)	948, 1126
Eco57I	CTGAAG	2 cut(s)	132, 1189
Eco91I	GGTNACC	1 cut(s)	184
EcoICRI	GAGCTC	2 cut(s)	948, 1126
EcoO65I	GGTNACC	1 cut(s)	184
EcoRI	GAATTC	3 cut(s)	536, 583, 940
EcoRII	CCWGG	3 cut(s)	44, 773, 906
EcoT38I	GRGCYC	2 cut(s)	950, 1128
Esp3I	CGTCTC	1 cut(s)	495
FaeI	CATG	7 cut(s)	70, 326, 388, 791, 1045, 1092, 1124
FalI	AAGNNNNNCTT	6 cut(s)	325, 357, 823, 855, 1068, 1100
FatI	CATG	7 cut(s)	66, 322, 384, 787, 1041, 1088, 1120
FbaI	TGATCA	1 cut(s)	1038
FblI	GTMKAC	2 cut(s)	389, 479
Fnu4HI	GCNGC	3 cut(s)	94, 758, 761
FokI	GGATG	3 cut(s)	90, 118, 1157
FriOI	GRGCYC	2 cut(s)	950, 1128
Fsp4HI	GCNGC	3 cut(s)	94, 758, 761
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	3 cut(s)	94, 758, 761
GsaI	CCCAGC	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	422, 911
HapII	CCGG	5 cut(s)	461, 698, 854, 895, 925
HgaI	GACGC	1 cut(s)	930
Hin1I	GRCGYC	1 cut(s)	922
Hin1II	CATG	7 cut(s)	70, 326, 388, 791, 1045, 1092, 1124
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	4 cut(s)	377, 703, 863, 973
HinfI	GANTC	8 cut(s)	319, 431, 452, 527, 656, 928, 961, 1022
HpaII	CCGG	5 cut(s)	461, 698, 854, 895, 925
HphI	GGTGA	3 cut(s)	178, 272, 843
Hpy166II	GTNNAC	4 cut(s)	292, 390, 480, 628
Hpy188III	TCNNGA	8 cut(s)	216, 323, 439, 494, 533, 671, 730, 1220
Hpy8I	GTNNAC	4 cut(s)	292, 390, 480, 628
Hpy99I	CGWCG	2 cut(s)	626, 940
HpyAV	CCTTC	1 cut(s)	1060
HpyCH4III	ACNGT	2 cut(s)	276, 551
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	6 cut(s)	279, 410, 890, 980, 1088, 1109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	922
Hsp92II	CATG	7 cut(s)	70, 326, 388, 791, 1045, 1092, 1124
Ksp22I	TGATCA	1 cut(s)	1038
Kzo9I	GATC	6 cut(s)	667, 791, 1000, 1038, 1078, 1159
LmnI	GCTCC	4 cut(s)	241, 401, 506, 754
Lsp1109I	GCAGC	3 cut(s)	105, 769, 772
LweI	GCATC	2 cut(s)	820, 1070
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	3 cut(s)	184, 545, 835
MalI	GATC	6 cut(s)	669, 793, 1002, 1040, 1080, 1161
MboI	GATC	6 cut(s)	667, 791, 1000, 1038, 1078, 1159
MfeI	CAATTG	1 cut(s)	981
MflI	RGATCY	1 cut(s)	1078
MhlI	GDGCHC	3 cut(s)	848, 950, 1128
MluCI	AATT	9 cut(s)	97, 313, 370, 536, 583, 874, 885, 940, 981
MlyI	GAGTC	4 cut(s)	313, 521, 937, 970
MmeI	TCCRAC	1 cut(s)	898
MroXI	GAANNNNTTC	2 cut(s)	340, 1080
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	1 cut(s)	623
MspI	CCGG	5 cut(s)	461, 698, 854, 895, 925
MspR9I	CCNGG	4 cut(s)	46, 775, 855, 908
MunI	CAATTG	1 cut(s)	981
Mva1269I	GAATGC	1 cut(s)	1111
MvaI	CCWGG	3 cut(s)	46, 775, 908
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	855
NdeII	GATC	6 cut(s)	667, 791, 1000, 1038, 1078, 1159
NlaIII	CATG	7 cut(s)	70, 326, 388, 791, 1045, 1092, 1124
NmuCI	GTSAC	2 cut(s)	184, 545
NspI	RCATGY	1 cut(s)	1092
PagI	TCATGA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	2 cut(s)	501, 941
PctI	GAATGC	1 cut(s)	1111
PdmI	GAANNNNTTC	2 cut(s)	340, 1080
PfeI	GAWTC	4 cut(s)	431, 452, 656, 1022
Pfl23II	CGTACG	1 cut(s)	815
PflMI	CCANNNNNTGG	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	773
PkrI	GCNGC	3 cut(s)	95, 759, 762
PleI	GAGTC	4 cut(s)	313, 521, 936, 969
PpsI	GAGTC	4 cut(s)	313, 521, 936, 969
PsiI	TTATAA	1 cut(s)	689
Psp124BI	GAGCTC	2 cut(s)	950, 1128
Psp6I	CCWGG	3 cut(s)	44, 773, 906
PspEI	GGTNACC	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	3 cut(s)	44, 773, 906
PspLI	CGTACG	1 cut(s)	815
PspPI	GGNCC	3 cut(s)	420, 441, 910
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	1078
RsaI	GTAC	3 cut(s)	11, 227, 817
RsaNI	GTAC	3 cut(s)	10, 226, 816
RseI	CAYNNNNRTG	1 cut(s)	623
SacI	GAGCTC	2 cut(s)	950, 1128
SalI	GTCGAC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	3 cut(s)	94, 758, 761
Sau3AI	GATC	6 cut(s)	667, 791, 1000, 1038, 1078, 1159
Sau96I	GGNCC	3 cut(s)	420, 441, 910
SchI	GAGTC	4 cut(s)	313, 521, 937, 970
ScrFI	CCNGG	4 cut(s)	46, 775, 855, 908
SduI	GDGCHC	3 cut(s)	848, 950, 1128
SfaNI	GCATC	2 cut(s)	820, 1070
SfcI	CTRYAG	2 cut(s)	408, 561
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	3 cut(s)	214, 509, 671
SmoI	CTYRAG	3 cut(s)	214, 509, 671
Sse9I	AATT	9 cut(s)	97, 313, 370, 536, 583, 874, 885, 940, 981
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	2 cut(s)	950, 1128
StyD4I	CCNGG	4 cut(s)	44, 773, 853, 906
TaaI	ACNGT	2 cut(s)	276, 551
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	8 cut(s)	389, 429, 495, 621, 842, 938, 944, 1064
TasI	AATT	9 cut(s)	97, 313, 370, 536, 583, 874, 885, 940, 981
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	4 cut(s)	431, 452, 656, 1022
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	2 cut(s)	279, 1171
TseFI	GTSAC	2 cut(s)	184, 545
TseI	GCWGC	3 cut(s)	93, 757, 760
Tsp45I	GTSAC	2 cut(s)	184, 545
TspDTI	ATGAA	4 cut(s)	506, 596, 726, 1128
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	2 cut(s)	279, 1171
Van91I	CCANNNNNTGG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	3 cut(s)	536, 583, 940
XceI	RCATGY	1 cut(s)	1092
XmiI	GTMKAC	2 cut(s)	389, 479
XmnI	GAANNNNTTC	2 cut(s)	340, 1080
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.