AT5G01930

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
361081 .. 362901
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01930.1

Sequence Viewer

Length: 1347 bp
ATGAAGGACCAACTTGGATTCAGAATTGTGCTCTGTTCTGCGGTTTTCATAATTCTGACTCAAAACAGAGCTCTCGCAGACTTGGACAGCGAGTCCCATGAGGTTAACTCAGAATCGGTAGGAGAAGAACAATGGGAGATGGTGCAGAGGAAAGGGATGCAATTCACTCTAAATGGACAACCATTCTATGTGAATGGCTTCAACACATACTGGATGATGACTCTTGCAGCTGACAATTCCACGAGAGGCAAAGTGACGGAAGTGTTCCAACAAGCCTCTGCGGTTGGAATGACGGTAGGCAGGACATGGGCTTTCAACGATGGCCAATGGAGAGCTCTCCAGAAATCTCCCTCTGTTTACGATGAAGAGGTCTTCAAGGCCCTCGACTTCGTGCTGAGCGAGGCCAGAAAGTACAAAATCAGGCTTATACTGTCATTGGTCAACAACTGGGACGCCTATGGCGGCAAAGCTCAGTACGTTAAATGGGGAAACGCCTCCGGCCTTAATCTCACTTCCGATGACGACTTCTTCACCAACCCCACCCTCAGAAACTTCTACCAATCCCATGTCCGGACAGTGCTGAATAGAGTGAACACCTTCACAAACATAACTTACAAGAACGACCCCACAATCTTCGCCTGGGAACTTATGAATGAGCCTCGTTGCCCCTCTGATCCTTCCGGCGACAAACTCCAGTCTTGGATACAAGAAATGGCGGTGTTTGTGAAGAGCTTAGACGCTAAACACTTGGTGGAGATCGGACTTGAAGGCTTCTATGGTCCCTCTGCCCCTGCGAGAACCAGATTCAACCCCAACCCCTACGCTGCACAAGTCGGAACTGACTTCATCAGAAATAATCAGGTTCTTGGCATTGATTTTGCCTCGGTTCACGTCTATCCAGATTCCTGGATATCTCCGGCAGTATCAAATTCTTTCCTGGAATTCACAAGCTCTTGGATGCAAGCTCATGTTGAGGACGCAGAGATGTACTTGGGAATGCCGGTTCTGTTCACAGAGTTTGGTGTGTCTGCACATGACCCTGGTTTCAACACGTCTTTCCGTGACATGATGTTGAACACAGTGTACAAGATGACCCTCAACTCAACAAGGAAAGGAGGGGCTGGTGCCGGGAGTCTGGTCTGGCAGGTCTTCCCTCAGGGGGCAGAGTTCATGGATGACGGCTATGCGGTTTACCTCACAAGAGCTCACACAGCTTCAAAAATCATATCTCTGCAGTCAAAGCGACTAGCCATCTTCAACTCCTTGTGTAGCTGGAGATGCAGATGGGGATGCAAGAAAAAGAATCAGACTGCTCTTGATGCCCTCCTCTCGCACGACGAGCTTTAA

Protein Analysis

448

Amino Acids

50.62

Weight (kDa)

5.95

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 46 - 381 5.7e-49 GH family 5 beta-mannosidase-like
Cellulase PF00150 58 - 357 4.2e-12 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1135
AccB1I GGYRCC 1 cut(s) 1124
AccIII TCCGGA 1 cut(s) 570
AciI CCGC 5 cut(s) 41, 281, 462, 716, 1187
AclWI GGATC 1 cut(s) 668
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 2 cut(s) 928, 941
AcyI GRCGYC 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 751
AfaI GTAC 4 cut(s) 413, 476, 989, 1085
AfiI CCNNNNNNNGG 2 cut(s) 570, 1159
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 9 cut(s) 202, 316, 376, 767, 808, 1048, 1075, 1218, 1258
AhdI GACNNNNNGTC 1 cut(s) 91
AjiI CACGTC 2 cut(s) 892, 1053
AjnI CCWGG 4 cut(s) 638, 905, 936, 1039
AloI GAACNNNNNNTCC 2 cut(s) 987, 1019
Alw21I GWGCWC 4 cut(s) 33, 73, 337, 1207
AlwI GGATC 1 cut(s) 668
Aor13HI TCCGGA 1 cut(s) 570
AoxI GGCC 4 cut(s) 322, 378, 402, 499
ApeKI GCWGC 2 cut(s) 227, 824
ApoI RAATTY 2 cut(s) 928, 941
Asp700I GAANNNNTTC 2 cut(s) 197, 596
AspS9I GGNCC 3 cut(s) 7, 379, 779
AsuC2I CCSGG 1 cut(s) 1129
AsuHPI GGTGA 1 cut(s) 523
AvaII GGWCC 2 cut(s) 7, 779
AxyI CCTNAGG 1 cut(s) 1155
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 1 cut(s) 1124
BanII GRGCYC 3 cut(s) 73, 337, 1207
BauI CACGAG 1 cut(s) 241
BbsI GAAGAC 2 cut(s) 364, 1141
Bbv12I GWGCWC 4 cut(s) 33, 73, 337, 1207
BbvI GCAGC 2 cut(s) 239, 811
BccI CCATC 4 cut(s) 133, 314, 1259, 1278
BceAI ACGGC 1 cut(s) 1195
BciT130I CCWGG 4 cut(s) 640, 907, 938, 1041
BciVI GTATCC 1 cut(s) 696
BcnI CCSGG 1 cut(s) 1129
BfaI CTAG 1 cut(s) 1247
BfmI CTRYAG 1 cut(s) 1232
BfuAI ACCTGC 1 cut(s) 1135
BfuI GTATCC 1 cut(s) 696
BisI GCNGC 3 cut(s) 228, 463, 825
BlpI GCTNAGC 1 cut(s) 395
BlsI GCNGC 3 cut(s) 229, 464, 826
Bme1390I CCNGG 5 cut(s) 640, 907, 938, 1041, 1129
Bme18I GGWCC 2 cut(s) 7, 779
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgBI CACGTC 2 cut(s) 892, 1053
BmgT120I GGNCC 3 cut(s) 7, 379, 779
BmiI GGNNCC 2 cut(s) 781, 1126
BmrFI CCNGG 5 cut(s) 640, 907, 938, 1041, 1129
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 5 cut(s) 147, 948, 1268, 1280, 1309
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 2 cut(s) 364, 1141
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 3 cut(s) 323, 677, 1294
Bpu1102I GCTNAGC 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 1129
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 3 cut(s) 639, 882, 1039
BsaWI WCCGGW 1 cut(s) 570
Bsc4I CCNNNNNNNGG 2 cut(s) 570, 1159
Bse118I RCCGGY 1 cut(s) 1000
Bse1I ACTGG 3 cut(s) 215, 452, 694
Bse21I CCTNAGG 1 cut(s) 1155
BseAI TCCGGA 1 cut(s) 570
BseBI CCWGG 4 cut(s) 640, 907, 938, 1041
BseDI CCNNGG 3 cut(s) 639, 882, 1039
BseGI GGATG 5 cut(s) 162, 219, 963, 1180, 1295
BseLI CCNNNNNNNGG 2 cut(s) 570, 1159
BseMII CTCAG 5 cut(s) 123, 386, 485, 559, 1169
BseNI ACTGG 3 cut(s) 215, 452, 694
BseRI GAGGAG 1 cut(s) 1316
BseXI GCAGC 2 cut(s) 239, 811
BsgI GTGCAG 3 cut(s) 164, 810, 1014
BshFI GGCC 4 cut(s) 324, 380, 404, 501
BshNI GGYRCC 1 cut(s) 1124
BsiHKAI GWGCWC 4 cut(s) 33, 73, 337, 1207
BsiSI CCGG 6 cut(s) 498, 571, 681, 917, 1001, 1128
BslFI GGGAC 3 cut(s) 79, 464, 765
BslI CCNNNNNNNGG 2 cut(s) 570, 1159
BsmFI GGGAC 3 cut(s) 79, 464, 765
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 4 cut(s) 324, 380, 404, 501
Bsp1286I GDGCHC 4 cut(s) 33, 73, 337, 1207
Bsp13I TCCGGA 1 cut(s) 570
Bsp1407I TGTACA 1 cut(s) 1083
Bsp143I GATC 2 cut(s) 673, 756
Bsp1720I GCTNAGC 1 cut(s) 395
BspACI CCGC 5 cut(s) 41, 281, 462, 716, 1187
BspANI GGCC 4 cut(s) 324, 380, 404, 501
BspCNI CTCAG 5 cut(s) 122, 387, 484, 558, 1168
BspEI TCCGGA 1 cut(s) 570
BspLI GGNNCC 2 cut(s) 781, 1126
BspMAI CTGCAG 1 cut(s) 1236
BspMI ACCTGC 1 cut(s) 1135
BspPI GGATC 1 cut(s) 668
BspQI GCTCTTC 1 cut(s) 722
BspT107I GGYRCC 1 cut(s) 1124
BsrFI RCCGGY 1 cut(s) 1000
BsrGI TGTACA 1 cut(s) 1083
BsrI ACTGG 3 cut(s) 215, 452, 694
BssAI RCCGGY 1 cut(s) 1000
BssECI CCNNGG 3 cut(s) 639, 882, 1039
BssMI GATC 2 cut(s) 673, 756
BssNI GRCGYC 1 cut(s) 453
BssSI CACGAG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 241
Bst2UI CCWGG 4 cut(s) 640, 907, 938, 1041
Bst4CI ACNGT 4 cut(s) 295, 432, 577, 1081
Bst6I CTCTTC 2 cut(s) 360, 722
BstACI GRCGYC 1 cut(s) 453
BstAUI TGTACA 1 cut(s) 1083
BstC8I GCNNGC 1 cut(s) 963
BstDEI CTNAG 6 cut(s) 109, 395, 471, 545, 733, 1155
BstF5I GGATG 5 cut(s) 162, 219, 963, 1180, 1295
BstKTI GATC 2 cut(s) 676, 759
BstMBI GATC 2 cut(s) 673, 756
BstMWI GCNNNNNNNGC 5 cut(s) 1211, 1240, 1278, 1319, 1339
BstNI CCWGG 4 cut(s) 640, 907, 938, 1041
BstSCI CCNGG 5 cut(s) 638, 905, 936, 1039, 1127
BstSFI CTRYAG 1 cut(s) 1232
BstV1I GCAGC 2 cut(s) 239, 811
BstV2I GAAGAC 2 cut(s) 364, 1141
BstXI CCANNNNNNTGG 1 cut(s) 906
Bsu36I CCTNAGG 1 cut(s) 1155
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 4 cut(s) 324, 380, 404, 501
BtrI CACGTC 2 cut(s) 892, 1053
BtsCI GGATG 5 cut(s) 162, 219, 963, 1180, 1295
BtsIMutI CAGTG 2 cut(s) 582, 1086
BveI ACCTGC 1 cut(s) 1135
Cac8I GCNNGC 1 cut(s) 963
Cfr10I RCCGGY 1 cut(s) 1000
Cfr13I GGNCC 3 cut(s) 7, 379, 779
CseI GACGC 3 cut(s) 461, 746, 986
Csp6I GTAC 4 cut(s) 412, 475, 988, 1084
CviAII CATG 7 cut(s) 98, 306, 566, 968, 1034, 1066, 1171
CviQI GTAC 4 cut(s) 412, 475, 988, 1084
DdeI CTNAG 6 cut(s) 109, 395, 471, 545, 733, 1155
DpnI GATC 2 cut(s) 675, 758
DpnII GATC 2 cut(s) 673, 756
DraIII CACNNNGTG 1 cut(s) 751
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 360, 722
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 2 cut(s) 360, 722
Ecl136II GAGCTC 3 cut(s) 71, 335, 1205
Eco24I GRGCYC 3 cut(s) 73, 337, 1207
Eco32I GATATC 1 cut(s) 912
Eco47I GGWCC 2 cut(s) 7, 779
Eco53kI GAGCTC 3 cut(s) 71, 335, 1205
Eco81I CCTNAGG 1 cut(s) 1155
EcoICRI GAGCTC 3 cut(s) 71, 335, 1205
EcoO109I RGGNCCY 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 941
EcoRII CCWGG 4 cut(s) 638, 905, 936, 1039
EcoRV GATATC 1 cut(s) 912
EcoT38I GRGCYC 3 cut(s) 73, 337, 1207
FaeI CATG 7 cut(s) 101, 309, 569, 971, 1037, 1069, 1174
FaqI GGGAC 3 cut(s) 79, 464, 765
FatI CATG 7 cut(s) 97, 305, 565, 967, 1033, 1065, 1170
Fnu4HI GCNGC 3 cut(s) 228, 463, 825
FokI GGATG 5 cut(s) 169, 226, 970, 1187, 1302
FriOI GRGCYC 3 cut(s) 73, 337, 1207
Fsp4HI GCNGC 3 cut(s) 228, 463, 825
FspBI CTAG 1 cut(s) 1247
GluI GCNGC 3 cut(s) 228, 463, 825
GsuI CTGGAG 3 cut(s) 323, 677, 1294
HaeIII GGCC 4 cut(s) 324, 380, 404, 501
HapII CCGG 6 cut(s) 498, 571, 681, 917, 1001, 1128
HgaI GACGC 3 cut(s) 461, 746, 986
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 7 cut(s) 101, 309, 569, 971, 1037, 1069, 1174
HincII GTYRAC 2 cut(s) 106, 442
HindII GTYRAC 2 cut(s) 106, 442
HinfI GANTC 9 cut(s) 18, 58, 92, 113, 220, 804, 902, 1132, 1303
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 6 cut(s) 498, 571, 681, 917, 1001, 1128
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 8 cut(s) 106, 358, 442, 592, 889, 1011, 1084, 1192
Hpy188III TCNNGA 4 cut(s) 340, 571, 899, 1316
Hpy8I GTNNAC 8 cut(s) 106, 358, 442, 592, 889, 1011, 1084, 1192
Hpy99I CGWCG 1 cut(s) 1340
HpyAV CCTTC 3 cut(s) 607, 687, 761
HpyCH4III ACNGT 4 cut(s) 295, 432, 577, 1081
HpyCH4IV ACGT 3 cut(s) 477, 891, 1052
HpyCH4V TGCA 9 cut(s) 145, 160, 227, 827, 961, 1031, 1234, 1281, 1293
HpyF10VI GCNNNNNNNGC 5 cut(s) 1211, 1240, 1278, 1319, 1339
HpyF3I CTNAG 6 cut(s) 109, 395, 471, 545, 733, 1155
HpySE526I ACGT 3 cut(s) 477, 891, 1052
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 7 cut(s) 101, 309, 569, 971, 1037, 1069, 1174
Kpn2I TCCGGA 1 cut(s) 570
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 673, 756
LguI GCTCTTC 1 cut(s) 722
Lsp1109I GCAGC 2 cut(s) 239, 811
LweI GCATC 5 cut(s) 147, 948, 1268, 1280, 1309
MaeI CTAG 1 cut(s) 1247
MaeII ACGT 3 cut(s) 477, 891, 1052
MaeIII GTNAC 2 cut(s) 253, 1061
MalI GATC 2 cut(s) 675, 758
MboI GATC 2 cut(s) 673, 756
MboII GAAGA 8 cut(s) 137, 364, 377, 520, 625, 739, 1141, 1246
MhlI GDGCHC 4 cut(s) 33, 73, 337, 1207
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 6 cut(s) 24, 51, 161, 235, 928, 941
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 4 cut(s) 52, 101, 214, 1141
MmeI TCCRAC 3 cut(s) 265, 292, 814
Mox20I TGGCCA 1 cut(s) 324
MroI TCCGGA 1 cut(s) 570
MroXI GAANNNNTTC 2 cut(s) 197, 596
MscI TGGCCA 1 cut(s) 324
MseI TTAA 4 cut(s) 105, 480, 504, 1345
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 6 cut(s) 498, 571, 681, 917, 1001, 1128
MspR9I CCNGG 5 cut(s) 640, 907, 938, 1041, 1129
Mva1269I GAATGC 1 cut(s) 1002
MvaI CCWGG 4 cut(s) 640, 907, 938, 1041
MwoI GCNNNNNNNGC 5 cut(s) 1211, 1240, 1278, 1319, 1339
NciI CCSGG 1 cut(s) 1129
NdeII GATC 2 cut(s) 673, 756
NlaIII CATG 7 cut(s) 101, 309, 569, 971, 1037, 1069, 1174
NlaIV GGNNCC 2 cut(s) 781, 1126
NmuCI GTSAC 2 cut(s) 253, 1061
PciSI GCTCTTC 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 1 cut(s) 1002
PdmI GAANNNNTTC 2 cut(s) 197, 596
PfeI GAWTC 5 cut(s) 18, 113, 804, 902, 1303
PfoI TCCNGGA 2 cut(s) 905, 936
PkrI GCNGC 3 cut(s) 229, 464, 826
PleI GAGTC 4 cut(s) 52, 100, 214, 1140
PpsI GAGTC 4 cut(s) 52, 100, 214, 1140
Psp124BI GAGCTC 3 cut(s) 73, 337, 1207
Psp6I CCWGG 4 cut(s) 638, 905, 936, 1039
PspGI CCWGG 4 cut(s) 638, 905, 936, 1039
PspN4I GGNNCC 2 cut(s) 781, 1126
PspPI GGNCC 3 cut(s) 7, 379, 779
PsrI GAACNNNNNNTAC 2 cut(s) 1067, 1099
PstI CTGCAG 1 cut(s) 1236
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 4 cut(s) 413, 476, 989, 1085
RsaNI GTAC 4 cut(s) 412, 475, 988, 1084
SacI GAGCTC 3 cut(s) 73, 337, 1207
SapI GCTCTTC 1 cut(s) 722
SaqAI TTAA 4 cut(s) 105, 480, 504, 1345
SatI GCNGC 3 cut(s) 228, 463, 825
Sau3AI GATC 2 cut(s) 673, 756
Sau96I GGNCC 3 cut(s) 7, 379, 779
SchI GAGTC 4 cut(s) 52, 101, 214, 1141
ScrFI CCNGG 5 cut(s) 640, 907, 938, 1041, 1129
SduI GDGCHC 4 cut(s) 33, 73, 337, 1207
SfaNI GCATC 5 cut(s) 147, 948, 1268, 1280, 1309
SfcI CTRYAG 1 cut(s) 1232
SinI GGWCC 2 cut(s) 7, 779
Sse9I AATT 6 cut(s) 24, 51, 161, 235, 928, 941
SsiI CCGC 5 cut(s) 41, 281, 462, 716, 1187
SspMI CTAG 1 cut(s) 1247
SstI GAGCTC 3 cut(s) 73, 337, 1207
StyD4I CCNGG 5 cut(s) 638, 905, 936, 1039, 1127
TaaI ACNGT 4 cut(s) 295, 432, 577, 1081
TaiI ACGT 3 cut(s) 480, 894, 1055
TaqI TCGA 1 cut(s) 384
TasI AATT 6 cut(s) 24, 51, 161, 235, 928, 941
TatI WGTACW 3 cut(s) 411, 987, 1083
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 5 cut(s) 18, 113, 804, 902, 1303
Tru1I TTAA 4 cut(s) 105, 480, 504, 1345
Tru9I TTAA 4 cut(s) 105, 480, 504, 1345
TscAI CASTG 2 cut(s) 582, 1086
TseFI GTSAC 2 cut(s) 253, 1061
TseI GCWGC 2 cut(s) 227, 824
Tsp45I GTSAC 2 cut(s) 253, 1061
TspDTI ATGAA 6 cut(s) 17, 37, 378, 665, 835, 1159
TspGWI ACGGA 2 cut(s) 272, 1049
TspRI CASTG 2 cut(s) 582, 1086
VpaK11BI GGWCC 2 cut(s) 7, 779
XapI RAATTY 2 cut(s) 928, 941
XmnI GAANNNNTTC 2 cut(s) 197, 596
XspI CTAG 1 cut(s) 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.