MD04G1176300.v1.1

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
26710107 .. 26712219
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1176300.v1.1.491

Sequence Viewer

Length: 1428 bp
ATGGATGGCCGCAAAAGAAAAATGACGACACAGAACATTGTTTTGGTGACCATTTTTATGATTTTCATCAGCCATTGTAGCTCTACTTTCTTTGATGCCAGTGGATTTGAGCAATTGGAAACAGTGGTGGAGAACGTCGAAGATCATTTAGCATATCCAAGCACAAATGATTGGTACCCGGTTGAAGAGCTGAATGATGGAATGGAAGATAATGAGTGGCAGTTGGTGCAGAAGAAAGGGAACCAATTTGTGTTGAATGATCAACCTTTCTATGTGAATGGATTCAACACTTACTGGTTGATGGTGTTTTCTGCCGATCAATCCACAAGGGGAAAAGTCACTGATTTGTTCAAACAGGCAGCTTCGGTTGGACTAACTGTTTGCAGGACTTGGGCTTTCAACGATGGCCAGTGGCGAGCTCTTCAGAAATCGCCATCAGTTTATGATGAAGAAGTTTTCAAGGCTTTGGATTTTGTGATAAGTGAGGCAAGGAAATACAAGATCAGACTCATATTATCTTTAACCAACAACTGGGATGCATATGGTGGAAAAGCACAATACGTTAAATGGGGAAAAGCAGCTGGTCTGAATTTGACTTCTGATGATGACTTCTTCACTCATCCAACACTCAAAAGCTACTACAAGGCCCATGTTAAGACGGTGCTTAATAGAGTTAATACACTCACAAACATAACTTACAAGGACGATCCCACAGTTTTCGCTTGGGAACTGATGAACGAGCCTCGATGCACCTCAGATCCTTCGGGAAATAAACTGCAGGATTGGATACAAGAAATGGCAGTTTATGTTAAGAGCGTTGATCCGAAACACTTGGTAGAGATTGGACTGGAAGGATTTTATGGTCCCTCAGCACCTGCCCGAGTTCAGTTCAATCCAAATACATATGCTCAACAAGTTGGAACTGATTTCATAAGGAACCACCAGGTTTTGGGTGTCGATTTTGCTTCTGCTCACATTTATGCAGACTCTTGGATATCACAATCAATCTCTGACGTGCATCTCCAATTTACCAAGTCATGGATGGAAGCCCACATTGAGGATGCAGAAAGGTATCTTGGAATGCCGGTGGTGTTTTCAGAGTTTGGCATATCTTCGAACGACCCCGGCTACAATTCATCATTTAGAGACACCCTTCTCAGCACAGTGTACAAGACCATCCTGAATTCTACAAGGAAAGGAGGGAGTGGAGGTGGGAGTCTTTTGTGGCAGCTCTTCCCAGATGGAACCGACTACATGGACGATGGTTATGCGATTGTTCTGTCAAAATCTCCTTCAACAGCAAACATCATAACCCTTCACTCCACAAGACTTGCCCTATTCAACTCTCGATGTTCTTGGAAATGCCGGTGGGGTTGTAAGAAGAAGCATCCAATAGAGGGATTCTTGCTACGTTATGATGAACTGTAA

Protein Analysis

476

Amino Acids

54.11

Weight (kDa)

5.71

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 74 - 409 1e-49 GH family 5 beta-mannosidase-like
Cellulase PF00150 87 - 375 1e-14 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 883
Acc36I ACCTGC 1 cut(s) 883
Acc65I GGTACC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 174
AccB7I CCANNNNNTGG 3 cut(s) 531, 949, 1038
AciI CCGC 1 cut(s) 10
AclWI GGATC 3 cut(s) 701, 752, 815
AcoI YGGCCR 2 cut(s) 7, 406
AcsI RAATTY 2 cut(s) 589, 1183
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 2 cut(s) 176, 1169
AfiI CCNNNNNNNGG 5 cut(s) 531, 949, 1038, 1057, 1397
AgsI TTSAA 9 cut(s) 185, 256, 286, 352, 400, 460, 892, 1296, 1342
AjiI CACGTC 1 cut(s) 1015
AjnI CCWGG 1 cut(s) 942
AjuI GAANNNNNNNTTGG 4 cut(s) 26, 58, 1059, 1091
AluBI AGCT 7 cut(s) 81, 190, 362, 419, 581, 636, 1231
AluI AGCT 7 cut(s) 81, 190, 362, 419, 581, 636, 1231
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 1140
AlwI GGATC 3 cut(s) 701, 752, 815
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 1 cut(s) 879
AoxI GGCC 3 cut(s) 7, 406, 645
ApeKI GCWGC 3 cut(s) 359, 578, 1228
ApoI RAATTY 2 cut(s) 589, 1183
ArsI GACNNNNNNTTYG 2 cut(s) 363, 395
Asp700I GAANNNNTTC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 646, 863
AsuC2I CCSGG 2 cut(s) 179, 1125
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 1 cut(s) 1115
AvaI CYCGRG 1 cut(s) 879
AvaII GGWCC 1 cut(s) 863
BalI TGGCCA 1 cut(s) 408
BanI GGYRCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvCI CCTCAGC 1 cut(s) 868
BbvI GCAGC 3 cut(s) 371, 590, 1240
BccI CCATC 8 cut(s) 191, 295, 398, 442, 1036, 1184, 1235, 1256
BcgI CGANNNNNNTGC 2 cut(s) 1250, 1284
BciT130I CCWGG 1 cut(s) 944
BciVI GTATCC 1 cut(s) 780
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 2 cut(s) 179, 1125
BcoDI GTCTC 1 cut(s) 1140
BfmI CTRYAG 1 cut(s) 776
BfuAI ACCTGC 1 cut(s) 883
BfuI GTATCC 1 cut(s) 780
BisI GCNGC 4 cut(s) 10, 360, 579, 1229
BlsI GCNGC 4 cut(s) 11, 361, 580, 1230
Bme1390I CCNGG 3 cut(s) 179, 944, 1125
Bme18I GGWCC 1 cut(s) 863
BmeT110I CYCGRG 1 cut(s) 879
BmgBI CACGTC 1 cut(s) 1015
BmgT120I GGNCC 2 cut(s) 646, 863
BmiI GGNNCC 5 cut(s) 176, 242, 865, 938, 1246
BmrFI CCNGG 3 cut(s) 179, 944, 1125
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 6 cut(s) 85, 526, 737, 1027, 1051, 1396
BmuI ACTGGG 1 cut(s) 541
Bpu10I CCTNAGC 1 cut(s) 868
Bpu14I TTCGAA 1 cut(s) 1115
BpuMI CCSGG 2 cut(s) 179, 1125
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 1123
BsaXI ACNNNNNCTCC 2 cut(s) 1195, 1225
Bsc4I CCNNNNNNNGG 5 cut(s) 531, 949, 1038, 1057, 1397
Bse118I RCCGGY 2 cut(s) 1084, 1365
Bse1I ACTGG 5 cut(s) 99, 299, 409, 536, 852
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 1 cut(s) 944
BseDI CCNNGG 1 cut(s) 1123
BseGI GGATG 7 cut(s) 10, 541, 619, 1047, 1066, 1176, 1387
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 5 cut(s) 531, 949, 1038, 1057, 1397
BseMII CTCAG 3 cut(s) 768, 882, 1171
BseNI ACTGG 5 cut(s) 99, 299, 409, 536, 852
BseXI GCAGC 3 cut(s) 371, 590, 1240
BsgI GTGCAG 1 cut(s) 248
BshFI GGCC 3 cut(s) 9, 408, 647
BshNI GGYRCC 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 879
BsiSI CCGG 4 cut(s) 179, 1085, 1125, 1366
BslFI GGGAC 1 cut(s) 849
BslI CCNNNNNNNGG 5 cut(s) 531, 949, 1038, 1057, 1397
BsmAI GTCTC 1 cut(s) 1140
BsmFI GGGAC 1 cut(s) 849
BsmI GAATGC 1 cut(s) 1086
BsnI GGCC 3 cut(s) 9, 408, 647
BsoBI CYCGRG 1 cut(s) 879
Bsp119I TTCGAA 1 cut(s) 1115
Bsp1286I GDGCHC 1 cut(s) 421
Bsp1407I TGTACA 1 cut(s) 1167
Bsp143I GATC 7 cut(s) 142, 259, 316, 501, 706, 757, 820
BspACI CCGC 1 cut(s) 10
BspANI GGCC 3 cut(s) 9, 408, 647
BspCNI CTCAG 3 cut(s) 767, 881, 1170
BspLI GGNNCC 5 cut(s) 176, 242, 865, 938, 1246
BspMAI CTGCAG 1 cut(s) 780
BspMI ACCTGC 1 cut(s) 883
BspPI GGATC 3 cut(s) 701, 752, 815
BspQI GCTCTTC 3 cut(s) 180, 426, 1238
BspT104I TTCGAA 1 cut(s) 1115
BspT107I GGYRCC 1 cut(s) 174
BsrFI RCCGGY 2 cut(s) 1084, 1365
BsrGI TGTACA 1 cut(s) 1167
BsrI ACTGG 5 cut(s) 99, 299, 409, 536, 852
BssAI RCCGGY 2 cut(s) 1084, 1365
BssECI CCNNGG 1 cut(s) 1123
BssMI GATC 7 cut(s) 142, 259, 316, 501, 706, 757, 820
Bst2UI CCWGG 1 cut(s) 944
Bst4CI ACNGT 6 cut(s) 124, 379, 661, 715, 1165, 1425
Bst6I CTCTTC 3 cut(s) 180, 426, 1238
BstAPI GCANNNNNTGC 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 1167
BstBI TTCGAA 1 cut(s) 1115
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 754, 868, 1157
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 7 cut(s) 10, 541, 619, 1047, 1066, 1176, 1387
BstKTI GATC 7 cut(s) 145, 262, 319, 504, 709, 760, 823
BstMAI GTCTC 1 cut(s) 1140
BstMBI GATC 7 cut(s) 142, 259, 316, 501, 706, 757, 820
BstMWI GCNNNNNNNGC 2 cut(s) 78, 226
BstNI CCWGG 1 cut(s) 944
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 3 cut(s) 177, 942, 1123
BstSFI CTRYAG 1 cut(s) 776
BstV1I GCAGC 3 cut(s) 371, 590, 1240
BstX2I RGATCY 1 cut(s) 757
BstYI RGATCY 1 cut(s) 757
BsuI GTATCC 1 cut(s) 780
BsuRI GGCC 3 cut(s) 9, 408, 647
BtrI CACGTC 1 cut(s) 1015
BtsCI GGATG 7 cut(s) 10, 541, 619, 1047, 1066, 1176, 1387
BtsIMutI CAGTG 5 cut(s) 106, 129, 339, 416, 1170
BveI ACCTGC 1 cut(s) 883
Cac8I GCNNGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 875
Cfr10I RCCGGY 2 cut(s) 1084, 1365
Cfr13I GGNCC 2 cut(s) 646, 863
CsiI ACCWGGT 1 cut(s) 942
Csp6I GTAC 2 cut(s) 175, 1168
CspCI CAANNNNNGTGG 2 cut(s) 1312, 1347
CviAII CATG 3 cut(s) 650, 1038, 1255
CviQI GTAC 2 cut(s) 175, 1168
DdeI CTNAG 3 cut(s) 754, 868, 1157
DpnI GATC 7 cut(s) 144, 261, 318, 503, 708, 759, 822
DpnII GATC 7 cut(s) 142, 259, 316, 501, 706, 757, 820
EaeI YGGCCR 2 cut(s) 7, 406
Eam1104I CTCTTC 3 cut(s) 180, 426, 1238
EarI CTCTTC 3 cut(s) 180, 426, 1238
Ecl136II GAGCTC 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 996
Eco47I GGWCC 1 cut(s) 863
Eco53kI GAGCTC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 879
Eco91I GGTNACC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 419
EcoO65I GGTNACC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 1183
EcoRII CCWGG 1 cut(s) 942
EcoRV GATATC 1 cut(s) 996
EcoT22I ATGCAT 1 cut(s) 541
EcoT38I GRGCYC 1 cut(s) 421
FaeI CATG 3 cut(s) 653, 1041, 1258
FaqI GGGAC 1 cut(s) 849
FatI CATG 3 cut(s) 649, 1037, 1254
FauNDI CATATG 2 cut(s) 541, 904
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 10, 360, 579, 1229
FokI GGATG 7 cut(s) 17, 548, 606, 1054, 1073, 1163, 1374
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 4 cut(s) 10, 360, 579, 1229
GluI GCNGC 4 cut(s) 10, 360, 579, 1229
HaeIII GGCC 3 cut(s) 9, 408, 647
HapII CCGG 4 cut(s) 179, 1085, 1125, 1366
Hin1II CATG 3 cut(s) 653, 1041, 1258
HinfI GANTC 5 cut(s) 282, 507, 986, 1216, 1401
HpaII CCGG 4 cut(s) 179, 1085, 1125, 1366
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 1168
Hpy188I TCNGA 8 cut(s) 426, 506, 588, 601, 757, 825, 1012, 1099
Hpy188III TCNNGA 3 cut(s) 765, 1180, 1347
Hpy8I GTNNAC 1 cut(s) 1168
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 5 cut(s) 771, 845, 1163, 1302, 1325
HpyCH4III ACNGT 6 cut(s) 124, 379, 661, 715, 1165, 1425
HpyCH4IV ACGT 4 cut(s) 135, 561, 1014, 1411
HpyCH4V TGCA 8 cut(s) 229, 384, 539, 750, 778, 983, 1018, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 226
HpyF3I CTNAG 3 cut(s) 754, 868, 1157
HpySE526I ACGT 4 cut(s) 135, 561, 1014, 1411
Hsp92II CATG 3 cut(s) 653, 1041, 1258
KpnI GGTACC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 7 cut(s) 142, 259, 316, 501, 706, 757, 820
LguI GCTCTTC 3 cut(s) 180, 426, 1238
Lsp1109I GCAGC 3 cut(s) 371, 590, 1240
LweI GCATC 6 cut(s) 85, 526, 737, 1027, 1051, 1396
MabI ACCWGGT 1 cut(s) 942
MaeII ACGT 4 cut(s) 135, 561, 1014, 1411
MaeIII GTNAC 2 cut(s) 46, 337
MalI GATC 7 cut(s) 144, 261, 318, 503, 708, 759, 822
MboI GATC 7 cut(s) 142, 259, 316, 501, 706, 757, 820
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 1 cut(s) 421
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 6 cut(s) 113, 245, 589, 1025, 1132, 1183
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 3 cut(s) 501, 980, 1225
MmeI TCCRAC 3 cut(s) 349, 647, 898
MnlI CCTC 8 cut(s) 478, 753, 763, 877, 1051, 1193, 1202, 1390
Mox20I TGGCCA 1 cut(s) 408
Mph1103I ATGCAT 1 cut(s) 541
MroXI GAANNNNTTC 1 cut(s) 281
MscI TGGCCA 1 cut(s) 408
MseI TTAA 6 cut(s) 521, 564, 654, 666, 675, 810
MslI CAYNNNNRTG 2 cut(s) 56, 978
Msp20I TGGCCA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 4 cut(s) 179, 1085, 1125, 1366
MspR9I CCNGG 3 cut(s) 179, 944, 1125
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 1086
MvaI CCWGG 1 cut(s) 944
MwoI GCNNNNNNNGC 2 cut(s) 78, 226
NciI CCSGG 2 cut(s) 179, 1125
NdeI CATATG 2 cut(s) 541, 904
NdeII GATC 7 cut(s) 142, 259, 316, 501, 706, 757, 820
NlaIII CATG 3 cut(s) 653, 1041, 1258
NlaIV GGNNCC 5 cut(s) 176, 242, 865, 938, 1246
NmuCI GTSAC 2 cut(s) 46, 337
NsiI ATGCAT 1 cut(s) 541
NspV TTCGAA 1 cut(s) 1115
PaqCI CACCTGC 1 cut(s) 883
PciSI GCTCTTC 3 cut(s) 180, 426, 1238
PctI GAATGC 1 cut(s) 1086
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 282, 1401
PflMI CCANNNNNTGG 3 cut(s) 531, 949, 1038
PkrI GCNGC 4 cut(s) 11, 361, 580, 1230
PleI GAGTC 3 cut(s) 501, 980, 1224
PpsI GAGTC 3 cut(s) 501, 980, 1224
Psp124BI GAGCTC 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 942
PspEI GGTNACC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 942
PspN4I GGNNCC 5 cut(s) 176, 242, 865, 938, 1246
PspPI GGNCC 2 cut(s) 646, 863
PstI CTGCAG 1 cut(s) 780
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 1 cut(s) 757
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 2 cut(s) 176, 1169
RsaNI GTAC 2 cut(s) 175, 1168
RseI CAYNNNNRTG 2 cut(s) 56, 978
SacI GAGCTC 1 cut(s) 421
SapI GCTCTTC 3 cut(s) 180, 426, 1238
SaqAI TTAA 6 cut(s) 521, 564, 654, 666, 675, 810
SatI GCNGC 4 cut(s) 10, 360, 579, 1229
Sau3AI GATC 7 cut(s) 142, 259, 316, 501, 706, 757, 820
Sau96I GGNCC 2 cut(s) 646, 863
SchI GAGTC 3 cut(s) 501, 980, 1225
ScrFI CCNGG 3 cut(s) 179, 944, 1125
SduI GDGCHC 1 cut(s) 421
SexAI ACCWGGT 1 cut(s) 942
SfaNI GCATC 6 cut(s) 85, 526, 737, 1027, 1051, 1396
SfcI CTRYAG 1 cut(s) 776
SfuI TTCGAA 1 cut(s) 1115
SinI GGWCC 1 cut(s) 863
SmiMI CAYNNNNRTG 2 cut(s) 56, 978
Sse9I AATT 6 cut(s) 113, 245, 589, 1025, 1132, 1183
SsiI CCGC 1 cut(s) 10
SstI GAGCTC 1 cut(s) 421
StyD4I CCNGG 3 cut(s) 177, 942, 1123
TaaI ACNGT 6 cut(s) 124, 379, 661, 715, 1165, 1425
TaiI ACGT 4 cut(s) 138, 564, 1017, 1414
TaqI TCGA 5 cut(s) 138, 745, 957, 1115, 1348
TasI AATT 6 cut(s) 113, 245, 589, 1025, 1132, 1183
TatI WGTACW 1 cut(s) 1167
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 2 cut(s) 282, 1401
Tru1I TTAA 6 cut(s) 521, 564, 654, 666, 675, 810
Tru9I TTAA 6 cut(s) 521, 564, 654, 666, 675, 810
TscAI CASTG 5 cut(s) 106, 129, 346, 416, 1170
TseFI GTSAC 2 cut(s) 46, 337
TseI GCWGC 3 cut(s) 359, 578, 1228
Tsp45I GTSAC 2 cut(s) 46, 337
TspDTI ATGAA 5 cut(s) 55, 462, 749, 919, 1125
TspRI CASTG 5 cut(s) 106, 129, 346, 416, 1170
Van91I CCANNNNNTGG 3 cut(s) 531, 949, 1038
VpaK11BI GGWCC 1 cut(s) 863
XapI RAATTY 2 cut(s) 589, 1183
XcmI CCANNNNNNNNNTGG 1 cut(s) 1039
XmnI GAANNNNTTC 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.