Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010210

Physical Location & Seq

Genomic Coordinates Forward (+)

5740788 .. 5743982

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09620.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGTGGAGGAAGCCGAAGATCATCTAGCATTTCCAAGCACAAGCAACTGGATTACTGAGATGAATGGCATGGAAGATGAAGAATGGGCAATGGTGCAGAAGAAAGGGAACCAATTTGTAGTGAATGATCAGCCTTTCTATGTGAATGGATTCAACACTTACTGGTTAATGGTTTTTGCTGCTGATCAGTCTACAAGAGGCAAAGTCACTGATGTGTTCAAACAAGCAGCTTCAGTGGGACTAACTATTTGTAGGACTTGGGCTTTTAACGACGGCCAGTGGCGAGCTCTTCAAAAATCTCCAGCAGTTTATGATGAAGAAGTTTTTAAGGCTTTGGATTTTGTGATAAGTGAAGCAAAGAAGTACAAGATCAGACTCATATTGTCCTTGACTAACAACTGGGATGCATATGGTGGAAAACCACAATATATCAAATGGGGAAAAGCAGCTGGCCTGAACTTGACATCGGACGACGACTTCTTCTCTCATCCAACACTCAAAAGCTACTACAAGGCCCATGTCAAGACGGTGCTTAATCGAGTGAATACCCTCACCAACATAACTTACAAGGATGATCCCACTGTTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACTTCAGATCCTTCTGGTGATACCCTGCAGGAATGGATACAAGAAATGGCTGTTTTCGTTAAGAGTGTTGACCCGAAGCACCTTGTGGAGATTGGTTTGGAAGGATTTTATGGCCCCTCAACACTTGACAGAGTTCAGTTCAATCCCAACACATACGCTCAACAAGTTGGAACTGATTTCATAAGGAACCACCAGGTCTTGGGTGTTGATTTTGCTTCTGTTCATATCTACGCAGACTCTTGGATTTCGCAATCCATTTCTGATGTCCATCTTCAATTCACCGAGTCATGGATTAAAGCTCACATTGATGATGCTGAGAAGTATCTTGGAATGCCTGTTGTGTTTGCTGAGTTTGGTGTATCAACAAAAGACCCTGGTTACAATACCTCATTTAGAGACACTGTTATCAACACAGTGTACAAGACCCTCTTAAACTCCACCAAGAAAGGAGGGAGTGGAGGTGGGAGTCTTTTGTGGCAACTCTTCCCTGATGGAACAGATTACATGGATGACGGCTATGCAATTGTTCTCTCGAAAGCTCCTTCGACATCAAACATCATTGCCCTTCACTCCACAAGACTTGCCCTCTTCAATTCCAGATGTGCTTGGAAATGCAAATGGGGTTGCAGGAAGAGGAGTCCACTAGAATTCCTATACAATGATGACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0032501 GO:0032502 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0048856 GO:0071554 GO:0071704 GO:0090351 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

430

Amino Acids

48.67

Weight (kDa)

5.35

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	69 - 403	2e-49	GH family 5 beta-mannosidase-like
Cellulase	PF00150	81 - 373	5.4e-15	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01930
fragaria_vesca	FvH4_6g09620 FvH4_6g09620
malus_domestica	MD04G1176300.v1.1 MD12G1190600.v1.1
prunus_persica	Prupe.6G295800_v2.0.a1
pyrus_communis	pycom04g15550 pycom12g17780
rosa_chinensis	RchiOBHm_Chr3g0460261
rosa_laevigata	RLG00000025031
rosa_multiflora	Rmu_sc0000449.1_g000017 Rmu_sc0003763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419680
rosa_rugosa	Rorug03G0041200 Rorug03G0041200 Rorug03G0041200
rosa_samantha	Rh3AG099000 Rh3BG102800 Rh3CG104500 Rh3DG103800
rosa_wichuraiana	Rw3G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	817
AccI	GTMKAC	1 cut(s)	191
AclWI	GGATC	2 cut(s)	569, 620
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	1265
AcuI	CTGAAG	2 cut(s)	216, 606
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	2 cut(s)	365, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	817, 906
AgsI	TTSAA	6 cut(s)	154, 220, 293, 760, 893, 1210
AjnI	CCWGG	2 cut(s)	810, 991
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	6 cut(s)	230, 287, 449, 504, 917, 1157
AluI	AGCT	6 cut(s)	230, 287, 449, 504, 917, 1157
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	1008
AlwI	GGATC	2 cut(s)	569, 620
AoxI	GGCC	4 cut(s)	274, 451, 513, 730
ApeKI	GCWGC	3 cut(s)	179, 227, 446
ApoI	RAATTY	1 cut(s)	1265
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	514, 731
AsuHPI	GGTGA	3 cut(s)	544, 647, 889
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	3 cut(s)	166, 239, 458
BccI	CCATC	2 cut(s)	894, 1103
BceAI	ACGGC	2 cut(s)	289, 1147
BciT130I	CCWGG	2 cut(s)	812, 993
BciVI	GTATCC	1 cut(s)	648
BclI	TGATCA	2 cut(s)	127, 184
BcoDI	GTCTC	1 cut(s)	1008
BfaI	CTAG	2 cut(s)	26, 1262
BfmI	CTRYAG	1 cut(s)	644
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	3 cut(s)	180, 228, 447
BlsI	GCNGC	3 cut(s)	181, 229, 448
Bme1390I	CCNGG	2 cut(s)	812, 993
BmgT120I	GGNCC	2 cut(s)	514, 731
BmiI	GGNNCC	3 cut(s)	110, 733, 806
BmrFI	CCNGG	2 cut(s)	812, 993
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	3 cut(s)	394, 605, 919
BmuI	ACTGGG	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	885
BsaJI	CCNNGG	1 cut(s)	991
BsaXI	ACNNNNNCTCC	2 cut(s)	1063, 1093
Bsc4I	CCNNNNNNNGG	2 cut(s)	817, 906
Bse1I	ACTGG	5 cut(s)	53, 167, 277, 404, 1285
Bse3DI	GCAATG	2 cut(s)	96, 1176
Bse8I	GATNNNNATC	1 cut(s)	885
BseBI	CCWGG	2 cut(s)	812, 993
BseDI	CCNNGG	1 cut(s)	991
BseGI	GGATG	4 cut(s)	409, 487, 577, 1132
BseJI	GATNNNNATC	1 cut(s)	885
BseLI	CCNNNNNNNGG	2 cut(s)	817, 906
BseMI	GCAATG	2 cut(s)	96, 1176
BseMII	CTCAG	3 cut(s)	48, 924, 957
BseNI	ACTGG	5 cut(s)	53, 167, 277, 404, 1285
BseRI	GAGGAG	1 cut(s)	1267
BseXI	GCAGC	3 cut(s)	166, 239, 458
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	4 cut(s)	276, 453, 515, 732
BsiHKAI	GWGCWC	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	817, 906
BsmAI	GTCTC	1 cut(s)	1008
BsmFI	GGGAC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	954
BsnI	GGCC	4 cut(s)	276, 453, 515, 732
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp143I	GATC	6 cut(s)	19, 127, 184, 369, 574, 625
BspANI	GGCC	4 cut(s)	276, 453, 515, 732
BspCNI	CTCAG	3 cut(s)	49, 925, 958
BspLI	GGNNCC	3 cut(s)	110, 733, 806
BspMAI	CTGCAG	1 cut(s)	648
BspPI	GGATC	2 cut(s)	569, 620
BspQI	GCTCTTC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	96, 1176
BsrGI	TGTACA	1 cut(s)	1035
BsrI	ACTGG	5 cut(s)	53, 167, 277, 404, 1285
BssECI	CCNNGG	1 cut(s)	991
BssMI	GATC	6 cut(s)	19, 127, 184, 369, 574, 625
Bst2UI	CCWGG	2 cut(s)	812, 993
Bst4CI	ACNGT	4 cut(s)	529, 583, 1021, 1033
Bst6I	CTCTTC	4 cut(s)	294, 1106, 1211, 1244
BstAUI	TGTACA	1 cut(s)	1035
BstC8I	GCNNGC	2 cut(s)	285, 451
BstDEI	CTNAG	3 cut(s)	57, 933, 966
BstF5I	GGATG	4 cut(s)	409, 487, 577, 1132
BstKTI	GATC	6 cut(s)	22, 130, 187, 372, 577, 628
BstMAI	GTCTC	1 cut(s)	1008
BstMBI	GATC	6 cut(s)	19, 127, 184, 369, 574, 625
BstNI	CCWGG	2 cut(s)	812, 993
BstSCI	CCNGG	2 cut(s)	810, 991
BstSFI	CTRYAG	1 cut(s)	644
BstV1I	GCAGC	3 cut(s)	166, 239, 458
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	4 cut(s)	276, 453, 515, 732
BtsCI	GGATG	4 cut(s)	409, 487, 577, 1132
BtsIMutI	CAGTG	6 cut(s)	207, 240, 284, 579, 1017, 1038
Cac8I	GCNNGC	2 cut(s)	285, 451
Cfr13I	GGNCC	2 cut(s)	514, 731
CsiI	ACCWGGT	1 cut(s)	810
Csp6I	GTAC	2 cut(s)	364, 1036
CspCI	CAANNNNNGTGG	4 cut(s)	568, 603, 1180, 1215
CviAII	CATG	4 cut(s)	70, 518, 906, 1123
CviQI	GTAC	2 cut(s)	364, 1036
DdeI	CTNAG	3 cut(s)	57, 933, 966
DpnI	GATC	6 cut(s)	21, 129, 186, 371, 576, 627
DpnII	GATC	6 cut(s)	19, 127, 184, 369, 574, 625
DraIII	CACNNNGTG	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	4 cut(s)	294, 1106, 1211, 1244
EarI	CTCTTC	4 cut(s)	294, 1106, 1211, 1244
Ecl136II	GAGCTC	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	216, 606
EcoICRI	GAGCTC	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	1265
EcoRII	CCWGG	2 cut(s)	810, 991
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	4 cut(s)	73, 521, 909, 1126
FalI	AAGNNNNNCTT	2 cut(s)	1031, 1063
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	4 cut(s)	69, 517, 905, 1122
FauNDI	CATATG	1 cut(s)	409
FbaI	TGATCA	2 cut(s)	127, 184
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	180, 228, 447
FokI	GGATG	4 cut(s)	416, 474, 584, 1139
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	3 cut(s)	180, 228, 447
FspBI	CTAG	2 cut(s)	26, 1262
GluI	GCNGC	3 cut(s)	180, 228, 447
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	4 cut(s)	276, 453, 515, 732
Hin1II	CATG	4 cut(s)	73, 521, 909, 1126
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	6 cut(s)	150, 375, 854, 902, 1084, 1255
HphI	GGTGA	3 cut(s)	544, 647, 889
Hpy166II	GTNNAC	4 cut(s)	192, 688, 1036, 1259
Hpy188I	TCNGA	4 cut(s)	374, 469, 625, 880
Hpy188III	TCNNGA	3 cut(s)	523, 1150, 1215
Hpy8I	GTNNAC	4 cut(s)	192, 688, 1036, 1259
Hpy99I	CGWCG	2 cut(s)	275, 476
HpyAV	CCTTC	4 cut(s)	639, 713, 1170, 1193
HpyCH4III	ACNGT	4 cut(s)	529, 583, 1021, 1033
HpyCH4V	TGCA	7 cut(s)	97, 407, 618, 646, 1139, 1233, 1245
HpyF3I	CTNAG	3 cut(s)	57, 933, 966
Hsp92II	CATG	4 cut(s)	73, 521, 909, 1126
Ksp22I	TGATCA	2 cut(s)	127, 184
Kzo9I	GATC	6 cut(s)	19, 127, 184, 369, 574, 625
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	1162
Lsp1109I	GCAGC	3 cut(s)	166, 239, 458
LweI	GCATC	3 cut(s)	394, 605, 919
MabI	ACCWGGT	1 cut(s)	810
MaeI	CTAG	2 cut(s)	26, 1262
MaeIII	GTNAC	2 cut(s)	205, 995
MalI	GATC	6 cut(s)	21, 129, 186, 371, 576, 627
MboI	GATC	6 cut(s)	19, 127, 184, 369, 574, 625
MfeI	CAATTG	1 cut(s)	1140
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	5 cut(s)	113, 893, 1140, 1210, 1265
MlyI	GAGTC	5 cut(s)	369, 848, 911, 1093, 1264
MmeI	TCCRAC	2 cut(s)	515, 766
Mph1103I	ATGCAT	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	7 cut(s)	167, 267, 327, 534, 678, 912, 1049
MslI	CAYNNNNRTG	2 cut(s)	212, 924
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	812, 993
MunI	CAATTG	1 cut(s)	1140
Mva1269I	GAATGC	1 cut(s)	954
MvaI	CCWGG	2 cut(s)	812, 993
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	6 cut(s)	19, 127, 184, 369, 574, 625
NlaIII	CATG	4 cut(s)	73, 521, 909, 1126
NlaIV	GGNNCC	3 cut(s)	110, 733, 806
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	954
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	817
PkrI	GCNGC	3 cut(s)	181, 229, 448
PleI	GAGTC	5 cut(s)	369, 848, 910, 1092, 1263
PpsI	GAGTC	5 cut(s)	369, 848, 910, 1092, 1263
Psp124BI	GAGCTC	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	810, 991
PspGI	CCWGG	2 cut(s)	810, 991
PspN4I	GGNNCC	3 cut(s)	110, 733, 806
PspPI	GGNCC	2 cut(s)	514, 731
PstI	CTGCAG	1 cut(s)	648
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	365, 1037
RsaNI	GTAC	2 cut(s)	364, 1036
RseI	CAYNNNNRTG	2 cut(s)	212, 924
SacI	GAGCTC	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	7 cut(s)	167, 267, 327, 534, 678, 912, 1049
SatI	GCNGC	3 cut(s)	180, 228, 447
Sau3AI	GATC	6 cut(s)	19, 127, 184, 369, 574, 625
Sau96I	GGNCC	2 cut(s)	514, 731
SbfI	CCTGCAGG	1 cut(s)	648
SchI	GAGTC	5 cut(s)	369, 848, 911, 1093, 1264
ScrFI	CCNGG	2 cut(s)	812, 993
SdaI	CCTGCAGG	1 cut(s)	648
SduI	GDGCHC	1 cut(s)	289
SexAI	ACCWGGT	1 cut(s)	810
SfaNI	GCATC	3 cut(s)	394, 605, 919
SfcI	CTRYAG	1 cut(s)	644
SmiMI	CAYNNNNRTG	2 cut(s)	212, 924
Sse8387I	CCTGCAGG	1 cut(s)	648
Sse9I	AATT	5 cut(s)	113, 893, 1140, 1210, 1265
SspMI	CTAG	2 cut(s)	26, 1262
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	2 cut(s)	810, 991
TaaI	ACNGT	4 cut(s)	529, 583, 1021, 1033
TaqI	TCGA	4 cut(s)	538, 613, 1151, 1163
TasI	AATT	5 cut(s)	113, 893, 1140, 1210, 1265
TatI	WGTACW	2 cut(s)	363, 1035
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	7 cut(s)	167, 267, 327, 534, 678, 912, 1049
Tru9I	TTAA	7 cut(s)	167, 267, 327, 534, 678, 912, 1049
TscAI	CASTG	6 cut(s)	214, 240, 284, 586, 1024, 1038
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	3 cut(s)	179, 227, 446
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	6 cut(s)	77, 93, 330, 617, 787, 830
TspRI	CASTG	6 cut(s)	214, 240, 284, 586, 1024, 1038
Van91I	CCANNNNNTGG	1 cut(s)	817
XapI	RAATTY	1 cut(s)	1265
XmiI	GTMKAC	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	26, 1262
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.