Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010210

Physical Location & Seq

Genomic Coordinates Reverse (-)

20176654 .. 20178034

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17780.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCCAGTGGAGTTGAGCAAATGGAAACTGTGGCGGAGGAAGCCGAAGATCGATCATTTAACGTATCCGAGCCCAAATGATTGGGTTGAAGAGGTGAATGGCGGAATGGAAGACGATGAGTGGCACTTAGTGCAGAAGAAAGGGAACCAATTTGTGGTGAATAATCAACCTTTCTATGTGAATGGATTCAACACTTACTGGCTCATGGTATTTGCTGCTGATCAATCCACAAGAGGAAAAGTCACCGATGTGTTTAAACAGGCATCTTCGGTCGGACTAACTGTTTGCAGGACTTGGGCTTTCAACGACGGCCAGTGGCGAGCTCTTCAGAAATCCCCATCAGTTTATGATGAAGAAGTTTTCAAGGCATTGGATTTTGTGATAGGTGAAGCAAGGAAATACAAGATCAGACTCATATTATCTTTAACCAACAACTGTGATGCATATGGTGGAAAAGCACAATATGTTAAATGGGGAAAAGCAGCTGGTGTGAATTTGACTTCTGACGACGACTTCTTCTCTCATCCAACACTCAAAAGCTACTACAAGGCCCACGTTAAGACGGTGCTTAATAGAGTTAATACACTCACAAACATAACTTACAAGGACGATCCCACAATTTTCGCTTGGGAACTGATGAACGAGCCTCAATGCACCTCAGATCCTTCGGGCGATAAACTGCAGGATTGGATACAAGAAATGGCAGTTTATGTTAAGAGCATTGATCCGAAACACTTGGTAGAGATTGGATTGGAAGGATTTTATGGTCCCTCAGCACCTGACCGAGTTCAATTCAATCCAAATCCATATGCTCAAGAAGTTGGAACTGATTTCATAAGGAACCACCAGGTTTTCGGTGTCGATTTTGCTTCTGTTCACATTTATGCAGACTCTTGCATCATCAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0032501 GO:0032502 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0048856 GO:0071554 GO:0071704 GO:0090351 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

304

Amino Acids

34.72

Weight (kDa)

5.83

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01930
fragaria_vesca	FvH4_6g09620 FvH4_6g09620
malus_domestica	MD04G1176300.v1.1 MD12G1190600.v1.1
prunus_persica	Prupe.6G295800_v2.0.a1
pyrus_communis	pycom04g15550 pycom12g17780
rosa_chinensis	RchiOBHm_Chr3g0460261
rosa_laevigata	RLG00000025031
rosa_multiflora	Rmu_sc0000449.1_g000017 Rmu_sc0003763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419680
rosa_rugosa	Rorug03G0041200 Rorug03G0041200 Rorug03G0041200
rosa_samantha	Rh3AG099000 Rh3BG102800 Rh3CG104500 Rh3DG103800
rosa_wichuraiana	Rw3G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AciI	CCGC	2 cut(s)	34, 102
AclWI	GGATC	3 cut(s)	605, 656, 719
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	311
AdeI	CACNNNGTG	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	6 cut(s)	89, 190, 304, 364, 791, 796
AjnI	CCWGG	1 cut(s)	846
AleI	CACNNNNGTG	1 cut(s)	248
AluBI	AGCT	3 cut(s)	323, 485, 540
AluI	AGCT	3 cut(s)	323, 485, 540
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	3 cut(s)	605, 656, 719
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	2 cut(s)	310, 549
ApeKI	GCWGC	2 cut(s)	215, 482
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
Asp700I	GAANNNNTTC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	550, 767
AsuHPI	GGTGA	4 cut(s)	106, 169, 235, 398
AvaII	GGWCC	1 cut(s)	767
BanII	GRGCYC	2 cut(s)	74, 325
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	325
BbvCI	CCTCAGC	1 cut(s)	772
BbvI	GCAGC	2 cut(s)	202, 494
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	848
BciVI	GTATCC	2 cut(s)	75, 684
BclI	TGATCA	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	680
BfuI	GTATCC	2 cut(s)	75, 684
BisI	GCNGC	2 cut(s)	216, 483
BlsI	GCNGC	2 cut(s)	217, 484
Bme1390I	CCNGG	1 cut(s)	848
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	2 cut(s)	550, 767
BmiI	GGNNCC	3 cut(s)	146, 769, 842
BmrFI	CCNGG	1 cut(s)	848
BmsI	GCATC	3 cut(s)	272, 430, 906
BpiI	GAAGAC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	772
BpuEI	CTTGAG	1 cut(s)	798
Bsa29I	ATCGAT	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	3 cut(s)	5, 203, 313
BseBI	CCWGG	1 cut(s)	848
BseCI	ATCGAT	1 cut(s)	51
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	672, 786
BseNI	ACTGG	3 cut(s)	5, 203, 313
BseXI	GCAGC	2 cut(s)	202, 494
BsgI	GTGCAG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	312, 551
BshVI	ATCGAT	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	753
BsnI	GGCC	2 cut(s)	312, 551
Bsp1286I	GDGCHC	2 cut(s)	74, 325
Bsp143I	GATC	7 cut(s)	48, 52, 220, 405, 610, 661, 724
BspACI	CCGC	2 cut(s)	34, 102
BspANI	GGCC	2 cut(s)	312, 551
BspCNI	CTCAG	2 cut(s)	671, 785
BspDI	ATCGAT	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	146, 769, 842
BspMAI	CTGCAG	1 cut(s)	684
BspPI	GGATC	3 cut(s)	605, 656, 719
BspQI	GCTCTTC	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	5, 203, 313
BssMI	GATC	7 cut(s)	48, 52, 220, 405, 610, 661, 724
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	4 cut(s)	30, 283, 437, 565
Bst6I	CTCTTC	2 cut(s)	84, 330
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	127, 658, 772
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	7 cut(s)	51, 55, 223, 408, 613, 664, 727
BstMBI	GATC	7 cut(s)	48, 52, 220, 405, 610, 661, 724
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 130
BstNI	CCWGG	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	846
BstSFI	CTRYAG	1 cut(s)	680
BstV1I	GCAGC	2 cut(s)	202, 494
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	661
Bsu15I	ATCGAT	1 cut(s)	51
BsuI	GTATCC	2 cut(s)	75, 684
BsuRI	GGCC	2 cut(s)	312, 551
BsuTUI	ATCGAT	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	12, 320
Cac8I	GCNNGC	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	779
Cfr13I	GGNCC	2 cut(s)	550, 767
ClaI	ATCGAT	1 cut(s)	51
CsiI	ACCWGGT	1 cut(s)	846
CviAII	CATG	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	127, 658, 772
DpnI	GATC	7 cut(s)	50, 54, 222, 407, 612, 663, 726
DpnII	GATC	7 cut(s)	48, 52, 220, 405, 610, 661, 724
DraI	TTTAAA	1 cut(s)	256
DraIII	CACNNNGTG	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	84, 330
EarI	CTCTTC	2 cut(s)	84, 330
EciI	GGCGGA	2 cut(s)	49, 117
Ecl136II	GAGCTC	1 cut(s)	323
Eco24I	GRGCYC	2 cut(s)	74, 325
Eco47I	GGWCC	1 cut(s)	767
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	846
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	74, 325
FaeI	CATG	1 cut(s)	208
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	1 cut(s)	204
FauNDI	CATATG	2 cut(s)	445, 808
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	216, 483
FokI	GGATG	1 cut(s)	510
FriOI	GRGCYC	2 cut(s)	74, 325
Fsp4HI	GCNGC	2 cut(s)	216, 483
GluI	GCNGC	2 cut(s)	216, 483
HaeIII	GGCC	2 cut(s)	312, 551
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	3 cut(s)	186, 411, 890
HphI	GGTGA	4 cut(s)	106, 169, 235, 398
Hpy166II	GTNNAC	1 cut(s)	877
Hpy188I	TCNGA	8 cut(s)	69, 275, 330, 410, 505, 661, 729, 911
Hpy188III	TCNNGA	1 cut(s)	815
Hpy8I	GTNNAC	1 cut(s)	877
Hpy99I	CGWCG	2 cut(s)	311, 512
HpyAV	CCTTC	2 cut(s)	675, 749
HpyCH4III	ACNGT	4 cut(s)	30, 283, 437, 565
HpyCH4IV	ACGT	2 cut(s)	62, 555
HpyCH4V	TGCA	7 cut(s)	133, 288, 443, 654, 682, 887, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 130
HpyF3I	CTNAG	3 cut(s)	127, 658, 772
HpySE526I	ACGT	2 cut(s)	62, 555
Hsp92II	CATG	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	48, 52, 220, 405, 610, 661, 724
LguI	GCTCTTC	1 cut(s)	330
Lsp1109I	GCAGC	2 cut(s)	202, 494
LweI	GCATC	3 cut(s)	272, 430, 906
MabI	ACCWGGT	1 cut(s)	846
MaeII	ACGT	2 cut(s)	62, 555
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	7 cut(s)	50, 54, 222, 407, 612, 663, 726
MboI	GATC	7 cut(s)	48, 52, 220, 405, 610, 661, 724
MboII	GAAGA	8 cut(s)	58, 101, 122, 148, 258, 317, 365, 508
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	2 cut(s)	74, 325
MluCI	AATT	4 cut(s)	149, 493, 618, 791
MlyI	GAGTC	2 cut(s)	405, 884
MmeI	TCCRAC	3 cut(s)	253, 551, 802
MnlI	CCTC	6 cut(s)	30, 85, 227, 657, 667, 781
Mph1103I	ATGCAT	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	8 cut(s)	59, 255, 425, 468, 558, 570, 579, 714
MslI	CAYNNNNRTG	2 cut(s)	248, 882
MspA1I	CMGCKG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	848
MssI	GTTTAAAC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	848
MwoI	GCNNNNNNNGC	2 cut(s)	40, 130
NdeI	CATATG	2 cut(s)	445, 808
NdeII	GATC	7 cut(s)	48, 52, 220, 405, 610, 661, 724
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	3 cut(s)	146, 769, 842
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	445
OliI	CACNNNNGTG	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	217, 484
PleI	GAGTC	2 cut(s)	405, 884
PmeI	GTTTAAAC	1 cut(s)	256
PpsI	GAGTC	2 cut(s)	405, 884
Psp124BI	GAGCTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	846
PspGI	CCWGG	1 cut(s)	846
PspN4I	GGNNCC	3 cut(s)	146, 769, 842
PspPI	GGNCC	2 cut(s)	550, 767
PstI	CTGCAG	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	485
RseI	CAYNNNNRTG	2 cut(s)	248, 882
SacI	GAGCTC	1 cut(s)	325
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	8 cut(s)	59, 255, 425, 468, 558, 570, 579, 714
SatI	GCNGC	2 cut(s)	216, 483
Sau3AI	GATC	7 cut(s)	48, 52, 220, 405, 610, 661, 724
Sau96I	GGNCC	2 cut(s)	550, 767
SchI	GAGTC	2 cut(s)	405, 884
ScrFI	CCNGG	1 cut(s)	848
SduI	GDGCHC	2 cut(s)	74, 325
SexAI	ACCWGGT	1 cut(s)	846
SfaNI	GCATC	3 cut(s)	272, 430, 906
SfcI	CTRYAG	1 cut(s)	680
SinI	GGWCC	1 cut(s)	767
SmiMI	CAYNNNNRTG	2 cut(s)	248, 882
SmlI	CTYRAG	1 cut(s)	813
SmoI	CTYRAG	1 cut(s)	813
Sse9I	AATT	4 cut(s)	149, 493, 618, 791
SsiI	CCGC	2 cut(s)	34, 102
SstI	GAGCTC	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	846
TaaI	ACNGT	4 cut(s)	30, 283, 437, 565
TaiI	ACGT	2 cut(s)	65, 558
TaqI	TCGA	2 cut(s)	51, 861
TaqII	GACCGA	2 cut(s)	259, 798
TasI	AATT	4 cut(s)	149, 493, 618, 791
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	8 cut(s)	59, 255, 425, 468, 558, 570, 579, 714
Tru9I	TTAA	8 cut(s)	59, 255, 425, 468, 558, 570, 579, 714
TscAI	CASTG	2 cut(s)	12, 320
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	215, 482
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	366, 653, 823
TspRI	CASTG	2 cut(s)	12, 320
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	767
XapI	RAATTY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.