Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010210

Physical Location & Seq

Genomic Coordinates Forward (+)

8250115 .. 8251929

Gene Structure 1815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG102800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGATACCCACAGAACAAAGTTGGTTTTACAGAACATTCTTGTAGTGACCACCATTTTCATGACTTTGATATCTACTTTCTGTGCTGCCAGTGGAGCTGGGCAATTGGAGACCATGGTTGAGGAAGCCAAAGATCATTTAGCATATCCAAGCACAACTAATTGGATTGATGAGATGAATGGCATGGAAGATGAAGAATGGGAAATGGTGCAGAGGAAAGGGAACCAATTTGTAGTGAATGATCAGCCTTTCTATGTGAATGGATTCAACACTTACTGGTTAATGGTTTTTGCTGCCGATCAGTCCACAAGAGGAAAGGTCACTGATGTGTTCAAACAGGCAGCTTCAGTGGGACTAACTATTTGTAGAACTTGGGCATTTAACGACGGCCAGTGGCGAGCTCTTCAGAAATCTCCAGGAGTTTATGATGAAGAAGTTTTCAAGGCTCTGGATTTTGTGATAAGCGAAGCAAAGAAGTACAAGATCAGACTCATATTGTCATTGACTAACAACTGGGATGCATATGGTGGAAAACCACAATATGTCAAATGGGGAAAAACTGCTGGCCTGAACTTGACATCGGATGACGACTTCTTCGCTCATCCAACACTCAAAAGCTACTACAAGGCCCATGTTAAGACGGTGCTTAATCGAGTGAATACCCTCACCAACATAACTTACAAGGATGATCCCACTGTTTTTGCTTGGGAACTGATGAATGAGCCTCGATGCACTTCAGATCCTTCCGGTGATAAACTGCAGGAATGGATACAAGAAATGGCAGTTTTCGTTAAGAGTGTGGATCCAAAGCACCTTGTGGAAATTGGTCTGGAAGGATTTTATGGCCCCTCAACACTTAACAGAGTTCAGTTCAATCCTAACACATACGCTCAACAAGTTGGAACTGATTTCATAAGGAACCACCAGGTCTTGGGTGTTGATTTTGCTTCTGTTCATATCTATGCAGACTCTTGGATTTCGCAATCAATTTCTGATGTCCATCTTCAATTCACCGAGTCATGGATAAAAGCTCACATTGATGATGCGGAGAATTATCTTGGAATGCCTGTTGTGTTTGCTGAGTTTGGTGTGTCTACGAAAGACCCTGGCTACAATGTCTCATTTAGAGACACTCTAATCAACAGTGTGTACAAGATCCTCTTGAACTCCACTAAGAAAGGAGGGAGTGGAGGTGGGAGTCTTTTGTGGCAGCTCTTCCCTGAAGGAACAGATTACATGGATGACGGCTATGCAGTTGTTCTCTCGAAATCTCCTTCGACATCAAACATCATAGCCCTTCACTCCACAAGACTTGCCCTCTTCAACTCCAGATGTGCTTGGAAATGCAAATGGGGTTGCAGGAAGAAGAGTCCGCTAGAGTTCCTATACAACGATGACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0032501 GO:0032502 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0048856 GO:0071554 GO:0071704 GO:0090351 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

467

Amino Acids

52.89

Weight (kDa)

5.54

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	68 - 403	4.9e-50	GH family 5 beta-mannosidase-like
Cellulase	PF00150	81 - 369	2.6e-15	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01930
fragaria_vesca	FvH4_6g09620 FvH4_6g09620
malus_domestica	MD04G1176300.v1.1 MD12G1190600.v1.1
prunus_persica	Prupe.6G295800_v2.0.a1
pyrus_communis	pycom04g15550 pycom12g17780
rosa_chinensis	RchiOBHm_Chr3g0460261
rosa_laevigata	RLG00000025031
rosa_multiflora	Rmu_sc0000449.1_g000017 Rmu_sc0003763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419680
rosa_rugosa	Rorug03G0041200 Rorug03G0041200 Rorug03G0041200
rosa_samantha	Rh3AG099000 Rh3BG102800 Rh3CG104500 Rh3DG103800
rosa_wichuraiana	Rw3G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	1094
AciI	CCGC	2 cut(s)	1046, 1373
AclWI	GGATC	5 cut(s)	683, 734, 797, 810, 1150
AcoI	YGGCCR	1 cut(s)	388
AcuI	CTGAAG	4 cut(s)	330, 389, 720, 1242
AdeI	CACNNNGTG	1 cut(s)	817
AfaI	GTAC	2 cut(s)	479, 1151
AfiI	CCNNNNNNNGG	2 cut(s)	931, 1020
AgsI	TTSAA	7 cut(s)	268, 334, 442, 874, 1007, 1165, 1324
AjnI	CCWGG	3 cut(s)	415, 924, 1105
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	6 cut(s)	98, 344, 401, 618, 1031, 1213
AluI	AGCT	6 cut(s)	98, 344, 401, 618, 1031, 1213
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	3 cut(s)	104, 1122, 1123
AlwI	GGATC	5 cut(s)	683, 734, 797, 810, 1150
AoxI	GGCC	4 cut(s)	388, 565, 627, 844
ApeKI	GCWGC	4 cut(s)	86, 293, 341, 1210
ArsI	GACNNNNNNTTYG	4 cut(s)	345, 377, 578, 610
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	628, 845
AsuHPI	GGTGA	3 cut(s)	658, 761, 1003
BamHI	GGATCC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	403
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	4 cut(s)	73, 280, 353, 1222
BccI	CCATC	1 cut(s)	1008
BceAI	ACGGC	2 cut(s)	403, 1261
BciT130I	CCWGG	3 cut(s)	417, 926, 1107
BciVI	GTATCC	1 cut(s)	762
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	3 cut(s)	104, 1122, 1123
BfaI	CTAG	1 cut(s)	1376
BfmI	CTRYAG	1 cut(s)	758
BfuI	GTATCC	1 cut(s)	762
BisI	GCNGC	4 cut(s)	87, 294, 342, 1211
BlsI	GCNGC	4 cut(s)	88, 295, 343, 1212
Bme1390I	CCNGG	3 cut(s)	417, 926, 1107
BmgT120I	GGNCC	2 cut(s)	628, 845
BmiI	GGNNCC	4 cut(s)	224, 804, 847, 920
BmrFI	CCNGG	3 cut(s)	417, 926, 1107
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	3 cut(s)	508, 719, 1033
BmuI	ACTGGG	1 cut(s)	523
BpmI	CTGGAG	2 cut(s)	399, 1312
BsaBI	GATNNNNATC	1 cut(s)	999
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	114, 1105
BsaWI	WCCGGW	1 cut(s)	746
BsaXI	ACNNNNNCTCC	2 cut(s)	1177, 1207
Bsc4I	CCNNNNNNNGG	2 cut(s)	931, 1020
Bse1I	ACTGG	4 cut(s)	90, 281, 391, 518
Bse8I	GATNNNNATC	1 cut(s)	999
BseBI	CCWGG	3 cut(s)	417, 926, 1107
BseDI	CCNNGG	2 cut(s)	114, 1105
BseGI	GGATG	5 cut(s)	523, 589, 601, 691, 1246
BseJI	GATNNNNATC	1 cut(s)	999
BseLI	CCNNNNNNNGG	2 cut(s)	931, 1020
BseMII	CTCAG	1 cut(s)	1071
BseNI	ACTGG	4 cut(s)	90, 281, 391, 518
BseXI	GCAGC	4 cut(s)	73, 280, 353, 1222
BseYI	CCCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	390, 567, 629, 846
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	747
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	931, 1020
BsmAI	GTCTC	3 cut(s)	104, 1122, 1123
BsmFI	GGGAC	1 cut(s)	366
BsmI	GAATGC	1 cut(s)	1068
BsnI	GGCC	4 cut(s)	390, 567, 629, 846
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp143I	GATC	8 cut(s)	133, 241, 298, 483, 688, 739, 802, 1155
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	2 cut(s)	1046, 1373
BspANI	GGCC	4 cut(s)	390, 567, 629, 846
BspCNI	CTCAG	1 cut(s)	1072
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	4 cut(s)	224, 804, 847, 920
BspMAI	CTGCAG	1 cut(s)	762
BspPI	GGATC	5 cut(s)	683, 734, 797, 810, 1150
BspQI	GCTCTTC	2 cut(s)	408, 1220
BspTNI	GGTCTC	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	4 cut(s)	90, 281, 391, 518
BssECI	CCNNGG	2 cut(s)	114, 1105
BssMI	GATC	8 cut(s)	133, 241, 298, 483, 688, 739, 802, 1155
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	417, 926, 1107
Bst4CI	ACNGT	3 cut(s)	643, 697, 1145
Bst6I	CTCTTC	4 cut(s)	408, 1220, 1325, 1361
BstAUI	TGTACA	1 cut(s)	1149
BstC8I	GCNNGC	2 cut(s)	399, 565
BstDEI	CTNAG	2 cut(s)	1080, 1173
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	5 cut(s)	523, 589, 601, 691, 1246
BstKTI	GATC	8 cut(s)	136, 244, 301, 486, 691, 742, 805, 1158
BstMAI	GTCTC	3 cut(s)	104, 1122, 1123
BstMBI	GATC	8 cut(s)	133, 241, 298, 483, 688, 739, 802, 1155
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	3 cut(s)	417, 926, 1107
BstSCI	CCNGG	3 cut(s)	415, 924, 1105
BstSFI	CTRYAG	1 cut(s)	758
BstV1I	GCAGC	4 cut(s)	73, 280, 353, 1222
BstX2I	RGATCY	3 cut(s)	739, 802, 1155
BstYI	RGATCY	3 cut(s)	739, 802, 1155
BsuI	GTATCC	1 cut(s)	762
BsuRI	GGCC	4 cut(s)	390, 567, 629, 846
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	5 cut(s)	523, 589, 601, 691, 1246
BtsIMutI	CAGTG	6 cut(s)	97, 321, 354, 398, 693, 1150
Cac8I	GCNNGC	2 cut(s)	399, 565
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	628, 845
CsiI	ACCWGGT	1 cut(s)	924
Csp6I	GTAC	2 cut(s)	478, 1150
CspCI	CAANNNNNGTGG	4 cut(s)	682, 717, 1294, 1329
CviAII	CATG	6 cut(s)	61, 115, 184, 632, 1020, 1237
CviQI	GTAC	2 cut(s)	478, 1150
DdeI	CTNAG	2 cut(s)	1080, 1173
DpnI	GATC	8 cut(s)	135, 243, 300, 485, 690, 741, 804, 1157
DpnII	GATC	8 cut(s)	133, 241, 298, 483, 688, 739, 802, 1155
DraIII	CACNNNGTG	1 cut(s)	817
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	4 cut(s)	408, 1220, 1325, 1361
EarI	CTCTTC	4 cut(s)	408, 1220, 1325, 1361
Ecl136II	GAGCTC	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	401
Eco57I	CTGAAG	4 cut(s)	330, 389, 720, 1242
EcoICRI	GAGCTC	1 cut(s)	401
EcoRII	CCWGG	3 cut(s)	415, 924, 1105
EcoRV	GATATC	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	6 cut(s)	64, 118, 187, 635, 1023, 1240
FalI	AAGNNNNNCTT	2 cut(s)	1145, 1177
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	6 cut(s)	60, 114, 183, 631, 1019, 1236
FauNDI	CATATG	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	1094
Fnu4HI	GCNGC	4 cut(s)	87, 294, 342, 1211
FokI	GGATG	5 cut(s)	530, 588, 596, 698, 1253
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	4 cut(s)	87, 294, 342, 1211
FspBI	CTAG	1 cut(s)	1376
GluI	GCNGC	4 cut(s)	87, 294, 342, 1211
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	2 cut(s)	399, 1312
HaeIII	GGCC	4 cut(s)	390, 567, 629, 846
HapII	CCGG	1 cut(s)	747
Hin1II	CATG	6 cut(s)	64, 118, 187, 635, 1023, 1240
HinfI	GANTC	6 cut(s)	264, 489, 968, 1016, 1198, 1369
HpaII	CCGG	1 cut(s)	747
HphI	GGTGA	3 cut(s)	658, 761, 1003
Hpy166II	GTNNAC	3 cut(s)	306, 1095, 1150
Hpy188I	TCNGA	5 cut(s)	408, 488, 583, 739, 994
Hpy188III	TCNNGA	6 cut(s)	61, 449, 830, 1162, 1264, 1329
Hpy8I	GTNNAC	3 cut(s)	306, 1095, 1150
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	5 cut(s)	753, 827, 1217, 1284, 1307
HpyCH4III	ACNGT	3 cut(s)	643, 697, 1145
HpyCH4V	TGCA	8 cut(s)	211, 521, 732, 760, 965, 1253, 1347, 1359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	1080, 1173
Hsp92II	CATG	6 cut(s)	64, 118, 187, 635, 1023, 1240
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	8 cut(s)	133, 241, 298, 483, 688, 739, 802, 1155
LguI	GCTCTTC	2 cut(s)	408, 1220
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	4 cut(s)	73, 280, 353, 1222
LweI	GCATC	3 cut(s)	508, 719, 1033
MabI	ACCWGGT	1 cut(s)	924
MaeI	CTAG	1 cut(s)	1376
MaeIII	GTNAC	2 cut(s)	46, 319
MalI	GATC	8 cut(s)	135, 243, 300, 485, 690, 741, 804, 1157
MboI	GATC	8 cut(s)	133, 241, 298, 483, 688, 739, 802, 1155
MfeI	CAATTG	1 cut(s)	104
MflI	RGATCY	3 cut(s)	739, 802, 1155
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	7 cut(s)	104, 160, 227, 822, 987, 1007, 1051
MlyI	GAGTC	5 cut(s)	483, 962, 1025, 1207, 1378
MmeI	TCCRAC	2 cut(s)	629, 880
Mph1103I	ATGCAT	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	6 cut(s)	281, 381, 636, 648, 792, 858
MslI	CAYNNNNRTG	4 cut(s)	59, 326, 960, 1038
MspI	CCGG	1 cut(s)	747
MspR9I	CCNGG	3 cut(s)	417, 926, 1107
MunI	CAATTG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	1068
MvaI	CCWGG	3 cut(s)	417, 926, 1107
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	8 cut(s)	133, 241, 298, 483, 688, 739, 802, 1155
NlaIII	CATG	6 cut(s)	64, 118, 187, 635, 1023, 1240
NlaIV	GGNNCC	4 cut(s)	224, 804, 847, 920
NmuCI	GTSAC	2 cut(s)	46, 319
NsiI	ATGCAT	1 cut(s)	523
OliI	CACNNNNGTG	1 cut(s)	326
PagI	TCATGA	1 cut(s)	60
PciSI	GCTCTTC	2 cut(s)	408, 1220
PctI	GAATGC	1 cut(s)	1068
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	931
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	4 cut(s)	88, 295, 343, 1212
PleI	GAGTC	5 cut(s)	483, 962, 1024, 1206, 1377
PpsI	GAGTC	5 cut(s)	483, 962, 1024, 1206, 1377
Psp124BI	GAGCTC	1 cut(s)	403
Psp6I	CCWGG	3 cut(s)	415, 924, 1105
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	3 cut(s)	415, 924, 1105
PspN4I	GGNNCC	4 cut(s)	224, 804, 847, 920
PspPI	GGNCC	2 cut(s)	628, 845
PstI	CTGCAG	1 cut(s)	762
PsuI	RGATCY	3 cut(s)	739, 802, 1155
RsaI	GTAC	2 cut(s)	479, 1151
RsaNI	GTAC	2 cut(s)	478, 1150
RseI	CAYNNNNRTG	4 cut(s)	59, 326, 960, 1038
SacI	GAGCTC	1 cut(s)	403
SapI	GCTCTTC	2 cut(s)	408, 1220
SaqAI	TTAA	6 cut(s)	281, 381, 636, 648, 792, 858
SatI	GCNGC	4 cut(s)	87, 294, 342, 1211
Sau3AI	GATC	8 cut(s)	133, 241, 298, 483, 688, 739, 802, 1155
Sau96I	GGNCC	2 cut(s)	628, 845
SchI	GAGTC	5 cut(s)	483, 962, 1025, 1207, 1378
ScrFI	CCNGG	3 cut(s)	417, 926, 1107
SduI	GDGCHC	1 cut(s)	403
SexAI	ACCWGGT	1 cut(s)	924
SfaNI	GCATC	3 cut(s)	508, 719, 1033
SfcI	CTRYAG	1 cut(s)	758
SmiMI	CAYNNNNRTG	4 cut(s)	59, 326, 960, 1038
Sse9I	AATT	7 cut(s)	104, 160, 227, 822, 987, 1007, 1051
SsiI	CCGC	2 cut(s)	1046, 1373
SspMI	CTAG	1 cut(s)	1376
SstI	GAGCTC	1 cut(s)	403
StyD4I	CCNGG	3 cut(s)	415, 924, 1105
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	643, 697, 1145
TaqI	TCGA	4 cut(s)	652, 727, 1265, 1277
TasI	AATT	7 cut(s)	104, 160, 227, 822, 987, 1007, 1051
TatI	WGTACW	2 cut(s)	477, 1149
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	6 cut(s)	281, 381, 636, 648, 792, 858
Tru9I	TTAA	6 cut(s)	281, 381, 636, 648, 792, 858
TscAI	CASTG	6 cut(s)	97, 328, 354, 398, 700, 1150
TseFI	GTSAC	2 cut(s)	46, 319
TseI	GCWGC	4 cut(s)	86, 293, 341, 1210
Tsp45I	GTSAC	2 cut(s)	46, 319
TspDTI	ATGAA	7 cut(s)	49, 191, 207, 444, 731, 901, 944
TspRI	CASTG	6 cut(s)	97, 328, 354, 398, 700, 1150
Van91I	CCANNNNNTGG	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	1094
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	1376
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.