Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010210

Physical Location & Seq

Genomic Coordinates Reverse (-)

18404820 .. 18405983

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATCAACTCTTTCTATGTGAATGGATTCAACACTTACTGGTTGATGGTGTTTTCTGCTGATCAATCCACAAGGGGAAAAGTCACTGATTTGTTCAAACAGGCATCTTTGGTCGGACTAACTGTTTGCAGGACTTGGGCTTTCAACGATGGCCAGTGGCGAGCTCTTCAGAAATCGCCATCAGTTTATGACGAAGAAGTTTTCAAGGCTTTGGATTTTGTGATAAGTGAGGCAAGGAAATACAAGATCAGACTCATATTATCTTTAACCAACAACTGGGATGCATATGGTGGAAAAGCACAATACGTTAAATGGGGAAAAGCAGCTGGTCTGAATTTGACTTCTGATGATGACTTCTTCACTCATCCAACACTCAAAAGCTACTACAAGGCCCATGTTAAGACGGTGCTTAATAGAGTTAATACACTCACAAACATAACTTACAAGGACGATCCCACAGTTTTCGCTTGGGAACTGATGAACGAGCCTCGATGCACCTCAGATCCTTCGGGCAATAAACTGCAGGATTGGATACAAGAAATGGCAGTTTATGTTAAGAGCGTTGATCCGAAACACTTGGTAGAGATTGGACTGGAAGGATTTTACGGTCCCTCAGCACCTGCTCGAGTTCAGTTCAATCCAAATACATATGCTCAACAAGTTGGAACCGATTTCATAAGGAACCACCAGGCTTTGGGTGTCGATTTTGCTTCTGTTCACATTTATGCAGACTCTTGCACAAGCAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0032501 GO:0032502 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0048856 GO:0071554 GO:0071704 GO:0090351 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

251

Amino Acids

28.39

Weight (kDa)

6.95

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	4 - 205	7.7e-38	GH family 5 beta-mannosidase-like
Cellulase	PF00150	39 - 216	4.1e-10	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01930
fragaria_vesca	FvH4_6g09620 FvH4_6g09620
malus_domestica	MD04G1176300.v1.1 MD12G1190600.v1.1
prunus_persica	Prupe.6G295800_v2.0.a1
pyrus_communis	pycom04g15550 pycom12g17780
rosa_chinensis	RchiOBHm_Chr3g0460261
rosa_laevigata	RLG00000025031
rosa_multiflora	Rmu_sc0000449.1_g000017 Rmu_sc0003763.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419680
rosa_rugosa	Rorug03G0041200 Rorug03G0041200 Rorug03G0041200
rosa_samantha	Rh3AG099000 Rh3BG102800 Rh3CG104500 Rh3DG103800
rosa_wichuraiana	Rw3G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	628
Acc36I	ACCTGC	1 cut(s)	628
AccB7I	CCANNNNNTGG	2 cut(s)	276, 694
AclWI	GGATC	3 cut(s)	446, 497, 560
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	276, 694
AgsI	TTSAA	5 cut(s)	31, 97, 145, 205, 637
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	3 cut(s)	164, 326, 381
AluI	AGCT	3 cut(s)	164, 326, 381
Alw21I	GWGCWC	1 cut(s)	166
AlwI	GGATC	3 cut(s)	446, 497, 560
AlwNI	CAGNNNCTG	1 cut(s)	620
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	2 cut(s)	151, 390
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	334
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
Asp700I	GAANNNNTTC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	391, 608
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	608
BalI	TGGCCA	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	613
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	3 cut(s)	40, 143, 187
BciT130I	CCWGG	1 cut(s)	689
BciVI	GTATCC	1 cut(s)	525
BclI	TGATCA	2 cut(s)	3, 61
BfmI	CTRYAG	1 cut(s)	521
BfuAI	ACCTGC	1 cut(s)	628
BfuI	GTATCC	1 cut(s)	525
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	689
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	2 cut(s)	391, 608
BmiI	GGNNCC	3 cut(s)	610, 667, 683
BmrFI	CCNGG	1 cut(s)	689
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	113, 271, 482
BmuI	ACTGGG	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 694
Bse1I	ACTGG	4 cut(s)	44, 154, 281, 597
BseBI	CCWGG	1 cut(s)	689
BseGI	GGATG	2 cut(s)	286, 364
BseLI	CCNNNNNNNGG	2 cut(s)	276, 694
BseMII	CTCAG	2 cut(s)	513, 627
BseNI	ACTGG	4 cut(s)	44, 154, 281, 597
BseXI	GCAGC	1 cut(s)	335
BshFI	GGCC	2 cut(s)	153, 392
BsiHKAI	GWGCWC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	2 cut(s)	276, 694
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	2 cut(s)	153, 392
BsoBI	CYCGRG	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	6 cut(s)	3, 61, 246, 451, 502, 565
BspANI	GGCC	2 cut(s)	153, 392
BspCNI	CTCAG	2 cut(s)	512, 626
BspLI	GGNNCC	3 cut(s)	610, 667, 683
BspMAI	CTGCAG	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	3 cut(s)	446, 497, 560
BspQI	GCTCTTC	1 cut(s)	171
BsrI	ACTGG	4 cut(s)	44, 154, 281, 597
BssMI	GATC	6 cut(s)	3, 61, 246, 451, 502, 565
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	4 cut(s)	124, 406, 460, 608
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	499, 613
BstF5I	GGATG	2 cut(s)	286, 364
BstKTI	GATC	6 cut(s)	6, 64, 249, 454, 505, 568
BstMBI	GATC	6 cut(s)	3, 61, 246, 451, 502, 565
BstNI	CCWGG	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	1 cut(s)	521
BstV1I	GCAGC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	525
BsuRI	GGCC	2 cut(s)	153, 392
BtsCI	GGATG	2 cut(s)	286, 364
BtsIMutI	CAGTG	2 cut(s)	84, 161
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	162
CaiI	CAGNNNCTG	1 cut(s)	620
Cfr13I	GGNCC	2 cut(s)	391, 608
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	9 cut(s)	140, 153, 164, 209, 326, 381, 392, 487, 692
CviKI_1	RGCY	9 cut(s)	140, 153, 164, 209, 326, 381, 392, 487, 692
DdeI	CTNAG	2 cut(s)	499, 613
DpnI	GATC	6 cut(s)	5, 63, 248, 453, 504, 567
DpnII	GATC	6 cut(s)	3, 61, 246, 451, 502, 565
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	687
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	166
FaeI	CATG	1 cut(s)	398
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	1 cut(s)	394
FauNDI	CATATG	2 cut(s)	286, 649
FbaI	TGATCA	2 cut(s)	3, 61
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	2 cut(s)	293, 351
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	153, 392
Hin1II	CATG	1 cut(s)	398
HinfI	GANTC	3 cut(s)	27, 252, 731
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	8 cut(s)	116, 171, 251, 333, 346, 502, 570, 752
Hpy8I	GTNNAC	1 cut(s)	718
HpyAV	CCTTC	2 cut(s)	516, 590
HpyCH4III	ACNGT	4 cut(s)	124, 406, 460, 608
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	6 cut(s)	129, 284, 495, 523, 728, 738
HpyF3I	CTNAG	2 cut(s)	499, 613
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	398
Ksp22I	TGATCA	2 cut(s)	3, 61
Kzo9I	GATC	6 cut(s)	3, 61, 246, 451, 502, 565
LguI	GCTCTTC	1 cut(s)	171
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	3 cut(s)	113, 271, 482
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	6 cut(s)	5, 63, 248, 453, 504, 567
MboI	GATC	6 cut(s)	3, 61, 246, 451, 502, 565
MboII	GAAGA	3 cut(s)	158, 206, 349
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	1 cut(s)	334
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	2 cut(s)	246, 725
MmeI	TCCRAC	3 cut(s)	94, 392, 643
MnlI	CCTC	4 cut(s)	223, 498, 508, 622
Mox20I	TGGCCA	1 cut(s)	153
Mph1103I	ATGCAT	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	6 cut(s)	266, 309, 399, 411, 420, 555
MslI	CAYNNNNRTG	1 cut(s)	723
Msp20I	TGGCCA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	689
NdeI	CATATG	2 cut(s)	286, 649
NdeII	GATC	6 cut(s)	3, 61, 246, 451, 502, 565
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	3 cut(s)	610, 667, 683
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	624
PaqCI	CACCTGC	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	27
PflMI	CCANNNNNTGG	2 cut(s)	276, 694
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	2 cut(s)	246, 725
PpsI	GAGTC	2 cut(s)	246, 725
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	3 cut(s)	610, 667, 683
PspPI	GGNCC	2 cut(s)	391, 608
PspXI	VCTCGAGB	1 cut(s)	624
PstI	CTGCAG	1 cut(s)	525
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	502
PvuII	CAGCTG	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	723
SacI	GAGCTC	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	6 cut(s)	266, 309, 399, 411, 420, 555
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	6 cut(s)	3, 61, 246, 451, 502, 565
Sau96I	GGNCC	2 cut(s)	391, 608
SchI	GAGTC	2 cut(s)	246, 725
ScrFI	CCNGG	1 cut(s)	689
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	6 cut(s)	166, 309, 328, 383, 500, 622
SfaNI	GCATC	3 cut(s)	113, 271, 482
SfcI	CTRYAG	1 cut(s)	521
Sfr274I	CTCGAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	608
SlaI	CTCGAG	1 cut(s)	624
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
Sse9I	AATT	1 cut(s)	334
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	687
TaaI	ACNGT	4 cut(s)	124, 406, 460, 608
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	490, 625, 702
TasI	AATT	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	6 cut(s)	266, 309, 399, 411, 420, 555
Tru9I	TTAA	6 cut(s)	266, 309, 399, 411, 420, 555
TscAI	CASTG	2 cut(s)	91, 161
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	494, 664
TspRI	CASTG	2 cut(s)	91, 161
Van91I	CCANNNNNTGG	2 cut(s)	276, 694
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	624
XmnI	GAANNNNTTC	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.