AT5G02460

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013835
Physical Location & Seq
Reverse (-)
539249 .. 541316
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02460.1

Sequence Viewer

Length: 1200 bp
ATGGTTTTTTCTTCATTTCCTACTTATCCTGATCATTCATCAAACTGGCAACAACAACATCAACCAATCACAACCACCGTTGGATTCACGGGAAATAACATCAACCAACAGTTTCTTCCTCACCATCCCCTCCCACCGCAACAGCAACAAACGCCTCCGCAGCTTCACCACAACAACGGTAACGGCGGAGTCGCTGTTCCCGGTGGACCTGGCGGGTTAATCCGACCAGGTTCGATGGCGGAAAGAGCAAGGCTAGCCAACATACCATTACCTGAAACAGCCTTGAAGTGTCCAAGATGTGACTCAACTAACACCAAATTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTCTGCAAAGCATGCCGTCGTTACTGGACACGTGGCGGTGCTCTAAGGAGCGTTCCCGTCGGTGGCGGTTGCCGTAGAAACAAAAGAACCAAAAACAGCAGCGGTGGAGGTGGCGGTAGCACCAGTAGCGGTAACAGCAAGTCACAAGACAGCGCCACGAGCAACGACCAATACCACCACCGAGCCATGGCTAACAATCAGATGGGACCACCTTCTTCGTCATCGTCTCTAAGCTCGTTGCTGTCTTCTTACAACGCAGGGTTAATCCCCGGACATGATCATAACAGCAATAACAACAACATACTTGGACTTGGATCATCTTTGCCTCCTCTTAAGCTTATGCCTCCTTTAGACTTCACAGACAACTTCACCTTACAATACGGTGCCGTTTCAGCTCCTTCTTATCATATAGGCGGTGGAAGCAGTGGAGGAGCGGCGGCTCTTTTAAACGGTTTTGACCAGTGGAGATTCCCGGCAACAAACCAACTTCCTTTAGGCGGTTTAGACCCGTTTGATCAACAACATCAAATGGAGCAGCAGAATCCAGGTTACGGATTGGTTACCGGGTCGGGTCAGTATCGACCTAAGAACATTTTCCATAACCTTATCTCCTCTTCTTCGTCTGCTTCATCAGCTATGGTTACAGCCACCGCGTCGCAATTAGCTTCAGTGAAAATGGAAGATAGTAACAATCAGCTCAACTTGTCTAGACAACTTTTTGGAGACGAACAACAGCTCTGGAATATTCATGGCGCTGCTGCAGCATCCACCGCAGCTGCAACAAGTTCGTGGAGTGAAGTCTCTAATAATTTCAGTTCTTCTTCTACTAGCAATATATAA

Protein Analysis

399

Amino Acids

42.53

Weight (kDa)

9.17

Isoelectric Point (pI)

60.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 94 - 149 2.6e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02460
fragaria_vesca FvH4_6g14000
malus_domestica MD04G1126500.v1.1 MD12G1078400.v1.1
prunus_persica Prupe.6G253300_v2.0.a1
pyrus_communis pycom04g11350 pycom12g13510
rosa_chinensis RchiOBHm_Chr3g0466831
rosa_laevigata RLG00000024548
rosa_multiflora Rmu_sc0017982.1_g000002
rosa_roxburghii Rroxscaffold_6G00414100
rosa_rugosa Rorug03G0083900
rosa_samantha Rh3AG131600 Rh3BG152700 Rh3CG152900 Rh3DG153800
rosa_wichuraiana Rw3G012440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 743
AccBSI CCGCTC 1 cut(s) 794
AccII CGCG 1 cut(s) 1013
AclWI GGATC 1 cut(s) 682
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 1011
AcvI CACGTG 1 cut(s) 392
AfiI CCNNNNNNNGG 4 cut(s) 422, 547, 857, 911
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 2 cut(s) 286, 331
AjnI CCWGG 3 cut(s) 208, 226, 904
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 9 cut(s) 163, 594, 697, 755, 995, 1025, 1057, 1096, 1136
AluI AGCT 9 cut(s) 163, 594, 697, 755, 995, 1025, 1057, 1096, 1136
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 4 cut(s) 347, 591, 1077, 1165
AlwI GGATC 1 cut(s) 682
ApeKI GCWGC 8 cut(s) 160, 459, 895, 1115, 1118, 1121, 1133, 1136
ApoI RAATTY 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 953
AspLEI GCGC 2 cut(s) 515, 1115
AspS9I GGNCC 2 cut(s) 206, 566
AsuC2I CCSGG 4 cut(s) 201, 630, 833, 925
AsuHPI GGTGA 3 cut(s) 113, 158, 721
AsuNHI GCTAGC 1 cut(s) 253
AvaII GGWCC 2 cut(s) 206, 566
BanI GGYRCC 1 cut(s) 743
BauI CACGAG 1 cut(s) 517
BbrPI CACGTG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 8 cut(s) 172, 471, 907, 1102, 1105, 1123, 1133, 1145
BccI CCATC 3 cut(s) 132, 229, 556
BceAI ACGGC 4 cut(s) 199, 360, 417, 731
BcgI CGANNNNNNTGC 2 cut(s) 1128, 1162
BciT130I CCWGG 3 cut(s) 210, 228, 906
BclI TGATCA 3 cut(s) 31, 637, 874
BcnI CCSGG 4 cut(s) 201, 630, 833, 925
BcoDI GTCTC 4 cut(s) 347, 591, 1077, 1165
BfaI CTAG 3 cut(s) 254, 1068, 1188
BfmI CTRYAG 2 cut(s) 337, 1119
BfoI RGCGCY 2 cut(s) 516, 1116
BfrI CTTAAG 1 cut(s) 692
Bme1390I CCNGG 7 cut(s) 201, 210, 228, 630, 833, 906, 925
Bme18I GGWCC 2 cut(s) 206, 566
BmgT120I GGNCC 2 cut(s) 206, 566
BmiI GGNNCC 2 cut(s) 567, 745
BmrFI CCNGG 7 cut(s) 201, 210, 228, 630, 833, 906, 925
BmsI GCATC 1 cut(s) 1133
BmtI GCTAGC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 597
BpuMI CCSGG 4 cut(s) 201, 630, 833, 925
BsaAI YACGTR 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 546, 628
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 953, 983
Bsc4I CCNNNNNNNGG 4 cut(s) 422, 547, 857, 911
Bse1I ACTGG 4 cut(s) 50, 389, 483, 820
BseBI CCWGG 3 cut(s) 210, 228, 906
BseDI CCNNGG 2 cut(s) 546, 628
BseGI GGATG 2 cut(s) 124, 1124
BseLI CCNNNNNNNGG 4 cut(s) 422, 547, 857, 911
BseNI ACTGG 4 cut(s) 50, 389, 483, 820
BseRI GAGGAG 3 cut(s) 678, 804, 961
BseXI GCAGC 8 cut(s) 172, 471, 907, 1102, 1105, 1123, 1133, 1145
Bsh1236I CGCG 1 cut(s) 1013
BshNI GGYRCC 1 cut(s) 743
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 4 cut(s) 201, 630, 833, 924
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 4 cut(s) 422, 547, 857, 911
BsmAI GTCTC 4 cut(s) 347, 591, 1077, 1165
BsmBI CGTCTC 2 cut(s) 591, 1077
BsmFI GGGAC 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 4 cut(s) 31, 637, 674, 874
Bsp19I CCATGG 1 cut(s) 546
BspFNI CGCG 1 cut(s) 1013
BspLI GGNNCC 2 cut(s) 567, 745
BspMAI CTGCAG 1 cut(s) 1123
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 682
BspT107I GGYRCC 1 cut(s) 743
BspTI CTTAAG 1 cut(s) 692
BsrBI CCGCTC 1 cut(s) 794
BsrI ACTGG 4 cut(s) 50, 389, 483, 820
BssECI CCNNGG 2 cut(s) 546, 628
BssMI GATC 4 cut(s) 31, 637, 674, 874
BssSI CACGAG 1 cut(s) 517
BssT1I CCWWGG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 517
Bst2UI CCWGG 3 cut(s) 210, 228, 906
Bst4CI ACNGT 6 cut(s) 79, 111, 179, 341, 743, 812
Bst6I CTCTTC 1 cut(s) 979
BstAFI CTTAAG 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 255, 373
BstDEI CTNAG 3 cut(s) 404, 590, 945
BstDSI CCRYGG 1 cut(s) 546
BstEII GGTNACC 1 cut(s) 919
BstF5I GGATG 2 cut(s) 124, 1124
BstFNI CGCG 1 cut(s) 1013
BstH2I RGCGCY 2 cut(s) 516, 1116
BstHHI GCGC 2 cut(s) 515, 1115
BstKTI GATC 4 cut(s) 34, 640, 677, 877
BstMAI GTCTC 4 cut(s) 347, 591, 1077, 1165
BstMBI GATC 4 cut(s) 31, 637, 674, 874
BstNI CCWGG 3 cut(s) 210, 228, 906
BstNSI RCATGY 1 cut(s) 375
BstPI GGTNACC 1 cut(s) 919
BstSCI CCNGG 7 cut(s) 199, 208, 226, 628, 831, 904, 923
BstSFI CTRYAG 2 cut(s) 337, 1119
BstUI CGCG 1 cut(s) 1013
BstV1I GCAGC 8 cut(s) 172, 471, 907, 1102, 1105, 1123, 1133, 1145
BstV2I GAAGAC 1 cut(s) 597
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 124, 1124
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 3 cut(s) 790, 827, 1035
Cac8I GCNNGC 2 cut(s) 255, 373
CfoI GCGC 2 cut(s) 515, 1115
Cfr13I GGNCC 2 cut(s) 206, 566
CseI GACGC 1 cut(s) 1002
CsiI ACCWGGT 1 cut(s) 226
CviAII CATG 4 cut(s) 372, 547, 635, 1109
DdeI CTNAG 3 cut(s) 404, 590, 945
DpnI GATC 4 cut(s) 33, 639, 676, 876
DpnII GATC 4 cut(s) 31, 637, 674, 874
DraI TTTAAA 1 cut(s) 807
Eam1104I CTCTTC 1 cut(s) 979
EarI CTCTTC 1 cut(s) 979
EciI GGCGGA 2 cut(s) 201, 254
Eco130I CCWWGG 1 cut(s) 546
Eco47I GGWCC 2 cut(s) 206, 566
Eco57I CTGAAG 1 cut(s) 1011
Eco72I CACGTG 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 919
EcoO65I GGTNACC 1 cut(s) 919
EcoRII CCWGG 3 cut(s) 208, 226, 904
EcoT14I CCWWGG 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 2 cut(s) 591, 1077
FaeI CATG 4 cut(s) 375, 550, 638, 1112
FaqI GGGAC 1 cut(s) 579
FatI CATG 4 cut(s) 371, 546, 634, 1108
FauI CCCGC 1 cut(s) 206
FbaI TGATCA 3 cut(s) 31, 637, 874
FokI GGATG 2 cut(s) 111, 1111
FspBI CTAG 3 cut(s) 254, 1068, 1188
GlaI GCGC 2 cut(s) 514, 1114
HaeII RGCGCY 2 cut(s) 516, 1116
HapII CCGG 4 cut(s) 201, 630, 833, 924
HgaI GACGC 1 cut(s) 1002
HhaI GCGC 2 cut(s) 515, 1115
Hin1II CATG 4 cut(s) 375, 550, 638, 1112
Hin6I GCGC 2 cut(s) 513, 1113
HinP1I GCGC 2 cut(s) 513, 1113
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 5 cut(s) 84, 189, 302, 828, 901
HpaII CCGG 4 cut(s) 201, 630, 833, 924
HphI GGTGA 3 cut(s) 113, 158, 721
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 224, 561
Hpy188III TCNNGA 3 cut(s) 29, 1068, 1099
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 3 cut(s) 381, 422, 1018
HpyAV CCTTC 2 cut(s) 582, 768
HpyCH4III ACNGT 6 cut(s) 79, 111, 179, 341, 743, 812
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 3 cut(s) 366, 1121, 1139
HpyF3I CTNAG 3 cut(s) 404, 590, 945
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 4 cut(s) 375, 550, 638, 1112
HspAI GCGC 2 cut(s) 513, 1113
Ksp22I TGATCA 3 cut(s) 31, 637, 874
Kzo9I GATC 4 cut(s) 31, 637, 674, 874
LmnI GCTCC 4 cut(s) 408, 760, 791, 892
Lsp1109I GCAGC 8 cut(s) 172, 471, 907, 1102, 1105, 1123, 1133, 1145
LweI GCATC 1 cut(s) 1133
MabI ACCWGGT 1 cut(s) 226
MaeI CTAG 3 cut(s) 254, 1068, 1188
MaeII ACGT 1 cut(s) 391
MalI GATC 4 cut(s) 33, 639, 676, 876
MbiI CCGCTC 1 cut(s) 794
MboI GATC 4 cut(s) 31, 637, 674, 874
MboII GAAGA 9 cut(s) 3, 107, 567, 597, 966, 969, 1052, 1170, 1173
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 3 cut(s) 317, 1019, 1168
MlyI GAGTC 2 cut(s) 198, 296
MmeI TCCRAC 2 cut(s) 61, 247
MroXI GAANNNNTTC 1 cut(s) 953
MseI TTAA 4 cut(s) 218, 623, 693, 806
MspA1I CMGCKG 2 cut(s) 462, 1136
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 4 cut(s) 201, 630, 833, 924
MspR9I CCNGG 7 cut(s) 201, 210, 228, 630, 833, 906, 925
MvaI CCWGG 3 cut(s) 210, 228, 906
MvnI CGCG 1 cut(s) 1013
NciI CCSGG 4 cut(s) 201, 630, 833, 925
NcoI CCATGG 1 cut(s) 546
NdeII GATC 4 cut(s) 31, 637, 674, 874
NheI GCTAGC 1 cut(s) 253
NlaIII CATG 4 cut(s) 375, 550, 638, 1112
NlaIV GGNNCC 2 cut(s) 567, 745
NmuCI GTSAC 2 cut(s) 299, 501
NspI RCATGY 1 cut(s) 375
PaeI GCATGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 3 cut(s) 84, 828, 901
PleI GAGTC 2 cut(s) 197, 296
PmaCI CACGTG 1 cut(s) 392
PmlI CACGTG 1 cut(s) 392
PpsI GAGTC 2 cut(s) 197, 296
Ppu21I YACGTR 1 cut(s) 392
Psp6I CCWGG 3 cut(s) 208, 226, 904
PspCI CACGTG 1 cut(s) 392
PspEI GGTNACC 1 cut(s) 919
PspGI CCWGG 3 cut(s) 208, 226, 904
PspN4I GGNNCC 2 cut(s) 567, 745
PspPI GGNCC 2 cut(s) 206, 566
PstI CTGCAG 1 cut(s) 1123
PvuII CAGCTG 1 cut(s) 1136
SaqAI TTAA 4 cut(s) 218, 623, 693, 806
Sau3AI GATC 4 cut(s) 31, 637, 674, 874
Sau96I GGNCC 2 cut(s) 206, 566
SchI GAGTC 2 cut(s) 198, 296
ScrFI CCNGG 7 cut(s) 201, 210, 228, 630, 833, 906, 925
SduI GDGCHC 1 cut(s) 403
SexAI ACCWGGT 1 cut(s) 226
SfaNI GCATC 1 cut(s) 1133
SfcI CTRYAG 2 cut(s) 337, 1119
SinI GGWCC 2 cut(s) 206, 566
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SphI GCATGC 1 cut(s) 375
Sse9I AATT 3 cut(s) 317, 1019, 1168
SspI AATATT 1 cut(s) 1105
SspMI CTAG 3 cut(s) 254, 1068, 1188
StyD4I CCNGG 7 cut(s) 199, 208, 226, 628, 831, 904, 923
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 6 cut(s) 79, 111, 179, 341, 743, 812
TaiI ACGT 1 cut(s) 394
TaqI TCGA 2 cut(s) 233, 940
TasI AATT 3 cut(s) 317, 1019, 1168
TauI GCSGC 2 cut(s) 797, 800
TfiI GAWTC 3 cut(s) 84, 828, 901
Tru1I TTAA 4 cut(s) 218, 623, 693, 806
Tru9I TTAA 4 cut(s) 218, 623, 693, 806
TscAI CASTG 3 cut(s) 790, 827, 1035
TseFI GTSAC 2 cut(s) 299, 501
TseI GCWGC 8 cut(s) 160, 459, 895, 1115, 1118, 1121, 1133, 1136
Tsp45I GTSAC 2 cut(s) 299, 501
TspDTI ATGAA 3 cut(s) 27, 978, 1097
TspGWI ACGGA 1 cut(s) 927
TspRI CASTG 3 cut(s) 790, 827, 1035
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 206, 566
XapI RAATTY 1 cut(s) 317
XbaI TCTAGA 1 cut(s) 1067
XceI RCATGY 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 953
XspI CTAG 3 cut(s) 254, 1068, 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.