Rroxscaffold_6G00414100

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013835
Physical Location & Seq
Forward (+)
36419559 .. 36421433
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414100.1

Sequence Viewer

Length: 1143 bp
ATGGTTTTTTCCTCCATTCCAGCTTATCTTGATCCAGCCAACTGGCAACAGCAACCAAGTCCTCATCATCATCATCATCACTTACTATCAGGAAGCAGCAACAACAACAACAGCAACAACATCAACAACTCTCAGCTCCATCCGCTTCCGCCTCCCCCACCACCACCGCCTTCAAATCCTGGCAGTGGTGGCAGCGGGCCTGGAGGTGCGGGCTCGATCAGGCCAGGTTCCATGGCTGATCGAGCCCGCATGGCTAACATCCCCATGCCTGAGCCAGCACTCAAATGCCCTCGCTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCACGCAGCCCCGCCACTTCTGCAAGACCTGCCGACGCTACTGGACACGTGGCGGCGCCCTGAGGAACGTTCCCGTGGGAGGCGGCTGCAGGAGAAACAAAAGGAGCAGCAAAGGAGGAAGTAGCCGGTCTAAATCTCCAGTCAGCAGCTCGGACCGTCCCACCGGTTCGGCTAGCTCATCCGGTCAAGCAATTCCCTCCAACAGTTCAACTGGAACAGTTGATATGATCGCAGCTGGGTTGAGCCCTCAAATCCCACCACTGCGTTTCATCAACCCTTTCAATGACCACCACTTCGCAGCCAGCGAGAATCTCGGCCTGACCTACGGCATGAACTACGGCGGCGGCGGAGTAGGAGACTTGGGTTTTCAGATAGGGAGCGGCTTAGGTGGAGGAATTACTAGTACTCCCACCGGGTCGCTTTTTGAGCAGCAATGGAGGTTTCAACAGCAACCGCCGTCGTTTCCTTTCTTGAGTGGAGGTTTGGATCCTTCTCCTGGTTTGTTTGAGGGTAGTGGAGTTGAGTTTCCAGGTTATAATCAGGTGCGGCCGAGGCTACTATCGTCCGGTAGCAGTGTTGGGGTTTCTTCGCAAATGGCTTCGGTGAAGACGGAAGATCCTCACCATCAGAATCATCAGCAACAAGAGATGAACTTGTCTAGGCAGCTGTTGGGGATCCAAGGAGGGAATGAAAGTCAGTACTGGATTAACTCCAGTGGGAATGGGAATGGTACTTCAACAACTGCGTGGACCGATCTTTCTGGGTTTAGCTCTACTTCCACTGCCACCAATCATCCACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

380

Amino Acids

40.21

Weight (kDa)

9.36

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 93 - 148 1.4e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02460
fragaria_vesca FvH4_6g14000
malus_domestica MD04G1126500.v1.1 MD12G1078400.v1.1
prunus_persica Prupe.6G253300_v2.0.a1
pyrus_communis pycom04g11350 pycom12g13510
rosa_chinensis RchiOBHm_Chr3g0466831
rosa_laevigata RLG00000024548
rosa_multiflora Rmu_sc0017982.1_g000002
rosa_roxburghii Rroxscaffold_6G00414100
rosa_rugosa Rorug03G0083900
rosa_samantha Rh3AG131600 Rh3BG152700 Rh3CG152900 Rh3DG153800
rosa_wichuraiana Rw3G012440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
Acc36I ACCTGC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 720
AclI AACGTT 1 cut(s) 408
AclWI GGATC 6 cut(s) 26, 821, 834, 950, 1009, 1022
AcoI YGGCCR 1 cut(s) 887
AcvI CACGTG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 3 cut(s) 745, 1040, 1072
AfiI CCNNNNNNNGG 3 cut(s) 185, 419, 836
AflIII ACRYGT 1 cut(s) 386
AgeI ACCGGT 1 cut(s) 503
AgsI TTSAA 6 cut(s) 174, 328, 549, 622, 785, 1077
AhlI ACTAGT 1 cut(s) 740
AjnI CCWGG 5 cut(s) 178, 199, 223, 835, 868
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 7 cut(s) 23, 136, 489, 516, 575, 1006, 1110
AluI AGCT 7 cut(s) 23, 136, 489, 516, 575, 1006, 1110
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 6 cut(s) 26, 821, 834, 950, 1009, 1022
AoxI GGCC 4 cut(s) 197, 221, 655, 887
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AsiGI ACCGGT 1 cut(s) 503
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 3 cut(s) 197, 493, 1089
AsuC2I CCSGG 1 cut(s) 754
AsuHPI GGTGA 2 cut(s) 953, 955
AsuNHI GCTAGC 1 cut(s) 512
AvaII GGWCC 2 cut(s) 493, 1089
AxyI CCTNAGG 1 cut(s) 401
BamHI GGATCC 2 cut(s) 826, 1014
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 3 cut(s) 215, 247, 587
BbrPI CACGTG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 953
BccI CCATC 2 cut(s) 147, 972
BceAI ACGGC 3 cut(s) 682, 694, 781
BciT130I CCWGG 5 cut(s) 180, 201, 225, 837, 870
BcnI CCSGG 1 cut(s) 754
BcoDI GTCTC 1 cut(s) 690
BcuI ACTAGT 1 cut(s) 740
BfaI CTAG 3 cut(s) 513, 741, 999
BfmI CTRYAG 2 cut(s) 334, 427
BfoI RGCGCY 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 377
BglI GCCNNNNNGGC 1 cut(s) 251
BmcAI AGTACT 2 cut(s) 745, 1040
Bme1390I CCNGG 6 cut(s) 180, 201, 225, 754, 837, 870
Bme18I GGWCC 2 cut(s) 493, 1089
BmgT120I GGNCC 3 cut(s) 197, 493, 1089
BmiI GGNNCC 4 cut(s) 229, 397, 828, 1016
BmrFI CCNGG 6 cut(s) 180, 201, 225, 754, 837, 870
BmtI GCTAGC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 953
BpmI CTGGAG 3 cut(s) 222, 462, 1036
Bpu10I CCTNAGC 2 cut(s) 270, 724
BpuEI CTTGAG 1 cut(s) 832
BpuMI CCSGG 1 cut(s) 754
BsaAI YACGTR 1 cut(s) 389
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 4 cut(s) 231, 414, 890, 1018
BsaWI WCCGGW 3 cut(s) 503, 521, 905
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 419, 836
Bse118I RCCGGY 2 cut(s) 465, 503
Bse1I ACTGG 6 cut(s) 47, 386, 479, 556, 1046, 1053
Bse21I CCTNAGG 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 779
BseBI CCWGG 5 cut(s) 180, 201, 225, 837, 870
BseDI CCNNGG 4 cut(s) 231, 414, 890, 1018
BseGI GGATG 4 cut(s) 139, 258, 518, 1132
BseLI CCNNNNNNNGG 3 cut(s) 185, 419, 836
BseMI GCAATG 1 cut(s) 779
BseMII CTCAG 3 cut(s) 146, 261, 392
BseNI ACTGG 6 cut(s) 47, 386, 479, 556, 1046, 1053
BseX3I CGGCCG 1 cut(s) 887
BseYI CCCAGC 1 cut(s) 575
Bsh1285I CGRYCG 1 cut(s) 890
BshFI GGCC 4 cut(s) 199, 223, 657, 889
BshNI GGYRCC 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 890
BsiSI CCGG 5 cut(s) 466, 504, 522, 753, 906
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 3 cut(s) 185, 419, 836
BsmAI GTCTC 1 cut(s) 690
BsmFI GGGAC 1 cut(s) 483
BsnI GGCC 4 cut(s) 199, 223, 657, 889
Bsp1286I GDGCHC 3 cut(s) 215, 247, 587
Bsp143I GATC 8 cut(s) 31, 216, 238, 567, 826, 955, 1014, 1093
Bsp19I CCATGG 1 cut(s) 231
BspANI GGCC 4 cut(s) 199, 223, 657, 889
BspCNI CTCAG 3 cut(s) 145, 262, 393
BspLI GGNNCC 4 cut(s) 229, 397, 828, 1016
BspMAI CTGCAG 1 cut(s) 431
BspMI ACCTGC 1 cut(s) 377
BspOI GCTAGC 1 cut(s) 516
BspPI GGATC 6 cut(s) 26, 821, 834, 950, 1009, 1022
BspT107I GGYRCC 1 cut(s) 395
BsrBI CCGCTC 1 cut(s) 720
BsrDI GCAATG 1 cut(s) 779
BsrFI RCCGGY 2 cut(s) 465, 503
BsrI ACTGG 6 cut(s) 47, 386, 479, 556, 1046, 1053
BssAI RCCGGY 2 cut(s) 465, 503
BssECI CCNNGG 4 cut(s) 231, 414, 890, 1018
BssMI GATC 8 cut(s) 31, 216, 238, 567, 826, 955, 1014, 1093
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 231, 1018
Bst2UI CCWGG 5 cut(s) 180, 201, 225, 837, 870
Bst4CI ACNGT 3 cut(s) 497, 545, 559
BstACI GRCGYC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 6 cut(s) 197, 211, 247, 276, 514, 643
BstDEI CTNAG 4 cut(s) 132, 270, 401, 724
BstDSI CCRYGG 2 cut(s) 231, 414
BstF5I GGATG 4 cut(s) 139, 258, 518, 1132
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 8 cut(s) 34, 219, 241, 570, 829, 958, 1017, 1096
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 8 cut(s) 31, 216, 238, 567, 826, 955, 1014, 1093
BstMCI CGRYCG 1 cut(s) 890
BstMWI GCNNNNNNNGC 9 cut(s) 142, 189, 242, 251, 294, 360, 369, 766, 892
BstNI CCWGG 5 cut(s) 180, 201, 225, 837, 870
BstSCI CCNGG 6 cut(s) 178, 199, 223, 752, 835, 868
BstSFI CTRYAG 2 cut(s) 334, 427
BstV2I GAAGAC 1 cut(s) 953
BstX2I RGATCY 3 cut(s) 826, 955, 1014
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 3 cut(s) 826, 955, 1014
BstZI CGGCCG 1 cut(s) 887
Bsu36I CCTNAGG 1 cut(s) 401
BsuRI GGCC 4 cut(s) 199, 223, 657, 889
BtgI CCRYGG 2 cut(s) 231, 414
BtsCI GGATG 4 cut(s) 139, 258, 518, 1132
BtsI GCAGTG 4 cut(s) 190, 599, 919, 1119
BtsIMutI CAGTG 5 cut(s) 190, 599, 919, 1060, 1119
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 6 cut(s) 197, 211, 247, 276, 514, 643
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 2 cut(s) 465, 503
Cfr13I GGNCC 3 cut(s) 197, 493, 1089
CpoI CGGWCCG 1 cut(s) 493
CseI GACGC 1 cut(s) 384
Csp6I GTAC 3 cut(s) 744, 1039, 1071
CspAI ACCGGT 1 cut(s) 503
CspI CGGWCCG 1 cut(s) 493
CviAII CATG 4 cut(s) 232, 250, 265, 670
CviQI GTAC 3 cut(s) 744, 1039, 1071
DdeI CTNAG 4 cut(s) 132, 270, 401, 724
DinI GGCGCC 1 cut(s) 397
DpnI GATC 8 cut(s) 33, 218, 240, 569, 828, 957, 1016, 1095
DpnII GATC 8 cut(s) 31, 216, 238, 567, 826, 955, 1014, 1093
EaeI YGGCCR 1 cut(s) 887
EagI CGGCCG 1 cut(s) 887
EciI GGCGGA 2 cut(s) 138, 702
EclXI CGGCCG 1 cut(s) 887
Eco130I CCWWGG 2 cut(s) 231, 1018
Eco24I GRGCYC 3 cut(s) 215, 247, 587
Eco47I GGWCC 2 cut(s) 493, 1089
Eco52I CGGCCG 1 cut(s) 887
Eco72I CACGTG 1 cut(s) 389
Eco81I CCTNAGG 1 cut(s) 401
EcoRII CCWGG 5 cut(s) 178, 199, 223, 835, 868
EcoT14I CCWWGG 2 cut(s) 231, 1018
EcoT38I GRGCYC 3 cut(s) 215, 247, 587
EgeI GGCGCC 1 cut(s) 397
EheI GGCGCC 1 cut(s) 397
ErhI CCWWGG 2 cut(s) 231, 1018
FaeI CATG 4 cut(s) 235, 253, 268, 673
FaiI YATR 7 cut(s) 233, 251, 266, 566, 671, 876, 1141
FaqI GGGAC 1 cut(s) 483
FatI CATG 4 cut(s) 231, 249, 264, 669
FauI CCCGC 4 cut(s) 188, 202, 254, 359
FokI GGATG 4 cut(s) 126, 245, 505, 1119
FriOI GRGCYC 3 cut(s) 215, 247, 587
FspBI CTAG 3 cut(s) 513, 741, 999
GlaI GCGC 1 cut(s) 397
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 3 cut(s) 222, 462, 1036
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 4 cut(s) 199, 223, 657, 889
HapII CCGG 5 cut(s) 466, 504, 522, 753, 906
HgaI GACGC 1 cut(s) 384
HhaI GCGC 1 cut(s) 398
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 4 cut(s) 235, 253, 268, 673
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HinfI GANTC 3 cut(s) 299, 649, 970
HpaII CCGG 5 cut(s) 466, 504, 522, 753, 906
HphI GGTGA 2 cut(s) 953, 955
Hpy166II GTNNAC 2 cut(s) 303, 1089
Hpy188I TCNGA 3 cut(s) 493, 711, 969
Hpy188III TCNNGA 3 cut(s) 29, 90, 811
Hpy8I GTNNAC 2 cut(s) 303, 1089
Hpy99I CGWCG 2 cut(s) 378, 802
HpyAV CCTTC 2 cut(s) 180, 840
HpyCH4III ACNGT 3 cut(s) 497, 545, 559
HpyCH4IV ACGT 2 cut(s) 388, 408
HpyCH4V TGCA 2 cut(s) 363, 429
HpyF10VI GCNNNNNNNGC 9 cut(s) 142, 189, 242, 251, 294, 360, 369, 766, 892
HpyF3I CTNAG 4 cut(s) 132, 270, 401, 724
HpySE526I ACGT 2 cut(s) 388, 408
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 4 cut(s) 235, 253, 268, 673
HspAI GCGC 1 cut(s) 396
KasI GGCGCC 1 cut(s) 395
Kzo9I GATC 8 cut(s) 31, 216, 238, 567, 826, 955, 1014, 1093
LmnI GCTCC 3 cut(s) 141, 444, 717
MaeI CTAG 3 cut(s) 513, 741, 999
MaeII ACGT 2 cut(s) 388, 408
MalI GATC 8 cut(s) 33, 218, 240, 569, 828, 957, 1016, 1095
MbiI CCGCTC 1 cut(s) 720
MboI GATC 8 cut(s) 31, 216, 238, 567, 826, 955, 1014, 1093
MboII GAAGA 3 cut(s) 918, 958, 965
MflI RGATCY 3 cut(s) 826, 955, 1014
MhlI GDGCHC 3 cut(s) 215, 247, 587
MluCI AATT 2 cut(s) 531, 735
Mly113I GGCGCC 1 cut(s) 396
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 564
MseI TTAA 1 cut(s) 1047
MslI CAYNNNNRTG 2 cut(s) 263, 283
MspA1I CMGCKG 3 cut(s) 195, 575, 1006
MspI CCGG 5 cut(s) 466, 504, 522, 753, 906
MspR9I CCNGG 6 cut(s) 180, 201, 225, 754, 837, 870
MvaI CCWGG 5 cut(s) 180, 201, 225, 837, 870
MwoI GCNNNNNNNGC 9 cut(s) 142, 189, 242, 251, 294, 360, 369, 766, 892
NarI GGCGCC 1 cut(s) 396
NciI CCSGG 1 cut(s) 754
NcoI CCATGG 1 cut(s) 231
NdeII GATC 8 cut(s) 31, 216, 238, 567, 826, 955, 1014, 1093
NheI GCTAGC 1 cut(s) 512
NlaIII CATG 4 cut(s) 235, 253, 268, 673
NlaIV GGNNCC 4 cut(s) 229, 397, 828, 1016
NmeAIII GCCGAG 2 cut(s) 633, 915
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PfeI GAWTC 2 cut(s) 649, 970
PinAI ACCGGT 1 cut(s) 503
PleI GAGTC 1 cut(s) 307
PluTI GGCGCC 1 cut(s) 399
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 389
PsiI TTATAA 1 cut(s) 876
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 5 cut(s) 178, 199, 223, 835, 868
PspCI CACGTG 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 5 cut(s) 178, 199, 223, 835, 868
PspN4I GGNNCC 4 cut(s) 229, 397, 828, 1016
PspPI GGNCC 3 cut(s) 197, 493, 1089
PstI CTGCAG 1 cut(s) 431
PsuI RGATCY 3 cut(s) 826, 955, 1014
PvuII CAGCTG 2 cut(s) 575, 1006
RsaI GTAC 3 cut(s) 745, 1040, 1072
RsaNI GTAC 3 cut(s) 744, 1039, 1071
RseI CAYNNNNRTG 2 cut(s) 263, 283
Rsr2I CGGWCCG 1 cut(s) 493
RsrII CGGWCCG 1 cut(s) 493
SaqAI TTAA 1 cut(s) 1047
Sau3AI GATC 8 cut(s) 31, 216, 238, 567, 826, 955, 1014, 1093
Sau96I GGNCC 3 cut(s) 197, 493, 1089
ScaI AGTACT 2 cut(s) 745, 1040
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 6 cut(s) 180, 201, 225, 754, 837, 870
SduI GDGCHC 3 cut(s) 215, 247, 587
SfcI CTRYAG 2 cut(s) 334, 427
SfoI GGCGCC 1 cut(s) 397
SinI GGWCC 2 cut(s) 493, 1089
SmiMI CAYNNNNRTG 2 cut(s) 263, 283
SmlI CTYRAG 1 cut(s) 811
SmoI CTYRAG 1 cut(s) 811
SpeI ACTAGT 1 cut(s) 740
Sse9I AATT 2 cut(s) 531, 735
SspDI GGCGCC 1 cut(s) 395
SspMI CTAG 3 cut(s) 513, 741, 999
StyD4I CCNGG 6 cut(s) 178, 199, 223, 752, 835, 868
StyI CCWWGG 2 cut(s) 231, 1018
TaaI ACNGT 3 cut(s) 497, 545, 559
TaiI ACGT 2 cut(s) 391, 411
TaqI TCGA 2 cut(s) 215, 241
TaqII GACCGA 1 cut(s) 1106
TasI AATT 2 cut(s) 531, 735
TatI WGTACW 2 cut(s) 743, 1038
TauI GCSGC 6 cut(s) 396, 426, 684, 687, 723, 889
TfiI GAWTC 2 cut(s) 649, 970
Tru1I TTAA 1 cut(s) 1047
Tru9I TTAA 1 cut(s) 1047
TscAI CASTG 5 cut(s) 190, 606, 919, 1060, 1126
TspDTI ATGAA 4 cut(s) 598, 686, 1004, 1044
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 5 cut(s) 190, 606, 919, 1060, 1126
VpaK11BI GGWCC 2 cut(s) 493, 1089
XspI CTAG 3 cut(s) 513, 741, 999
ZrmI AGTACT 2 cut(s) 745, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.