FvH4_6g14000

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013835
Physical Location & Seq
Reverse (-)
8584387 .. 8586394
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14000.t1

Sequence Viewer

Length: 1143 bp
ATGGTTTTTTCCTCCATTCCGGCTTATCTTGATCCGGCCAACTGGCAGCAGCAACCAAGTCCTCATCATCATCATCACCATCACTTATTATCCGGAAGCAACAGCAATAACAACATCAACAACAACTCTCAGCTTCATCCTCTTCCACCTCCCCCGCCACCACCGCCTTCAAACCCTGGCGGTGGTGGCAGTGGGCCTGGAGGTGCGGGTTCGATCAGGCCAGGTTCCATGGCTGATCGAGCCCGCATGGCTAACATCCCCTTGCCTGAGCCGGCACTCAAATGCCCGCGCTGCGACTCCACCAACACTAAGTTCTGCTACTTCAACAACTACAGCCTCACGCAGCCTCGCCATTTCTGCAAAACTTGCCGACGCTACTGGACACGTGGTGGCGCGCTGAGAAACGTTCCAGTCGGAGGCGGCTGCAGGAGAAACAAAAGGAGCAGCAAAGGAGGAGGAAGTAGCAGGTCTAAATCTCCGGTTAGCAGCTCTGACCGCCCCACCGGTTCGGCAAGCTCATCTGGTCAAGCAATTCCATCCAATAGTTCAGCTGGAACTGTCGATATGATAGCAGCTGGGTTAAGCCCTCAAATCCCACCACTGCGTTTCATCAACCCTTTCGCTGACCACCACTTCGGCGCCAGCGAGAATCTCGGCATGAACTACGGCCTGAGCTACGGCGGTGGAGTAGGGGACTTGGGTTTTCAGATAGGGAGCGGTTTAGGTGGAGGAATTACTAGCACTCCTACCGGGTCGCTTTTCGAGCAGCAATGGAGGTTTCAACAGCAAACTCCCTCGTTTCCTTTCTTGAGTGGAGGTTTGGATTCTGCTCCTGGTTTATTTGAGGGTAGTGGAGTTGAGTTTTCAGGTTATAATCCGGTGCGGCCGAGGCTACTATCATCCGGTAGCAGTGTTGGGGTTTCTTCGCAAATAGCTTCGGTGAAGACGGAAGATCCTCACAATCAGAATCATCAGCAACAAGAGATGAACCTGTCGAGGCAGCTTTCGGGGATCCAAGGAGGGAATGACAGTCAGTACTGGATTAACGGCGCCGGTGGGAATGCGAATGGTACTTCAACAACTGCGTGGACTGATCTTTCTGGGTTCAGCTCTACTTCCACTGCCACCAATCATCCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

381

Amino Acids

39.86

Weight (kDa)

9.36

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 92 - 147 1.1e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02460
fragaria_vesca FvH4_6g14000
malus_domestica MD04G1126500.v1.1 MD12G1078400.v1.1
prunus_persica Prupe.6G253300_v2.0.a1
pyrus_communis pycom04g11350 pycom12g13510
rosa_chinensis RchiOBHm_Chr3g0466831
rosa_laevigata RLG00000024548
rosa_multiflora Rmu_sc0017982.1_g000002
rosa_roxburghii Rroxscaffold_6G00414100
rosa_rugosa Rorug03G0083900
rosa_samantha Rh3AG131600 Rh3BG152700 Rh3CG152900 Rh3DG153800
rosa_wichuraiana Rw3G012440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 873
Acc36I ACCTGC 1 cut(s) 456
AccB1I GGYRCC 2 cut(s) 638, 1049
AccBSI CCGCTC 1 cut(s) 717
AccII CGCG 2 cut(s) 289, 395
AccIII TCCGGA 1 cut(s) 92
AclI AACGTT 1 cut(s) 405
AclWI GGATC 4 cut(s) 26, 947, 1006, 1019
AcoI YGGCCR 2 cut(s) 36, 884
AcvI CACGTG 1 cut(s) 386
AcyI GRCGYC 2 cut(s) 639, 1050
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 2 cut(s) 1037, 1072
AfiI CCNNNNNNNGG 2 cut(s) 182, 416
AflIII ACRYGT 1 cut(s) 383
AgeI ACCGGT 1 cut(s) 503
AgsI TTSAA 4 cut(s) 171, 325, 782, 1077
AjnI CCWGG 4 cut(s) 175, 196, 220, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 9 cut(s) 133, 489, 516, 551, 575, 675, 935, 1003, 1110
AluI AGCT 9 cut(s) 133, 489, 516, 551, 575, 675, 935, 1003, 1110
AlwI GGATC 4 cut(s) 26, 947, 1006, 1019
Aor13HI TCCGGA 1 cut(s) 92
AoxI GGCC 5 cut(s) 36, 194, 218, 667, 884
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AsiGI ACCGGT 1 cut(s) 503
AspLEI GCGC 5 cut(s) 291, 395, 397, 641, 1052
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 751
AsuHPI GGTGA 2 cut(s) 68, 952
BamHI GGATCC 1 cut(s) 1011
BanI GGYRCC 2 cut(s) 638, 1049
BanII GRGCYC 1 cut(s) 244
BbrPI CACGTG 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 950
BccI CCATC 2 cut(s) 87, 544
BceAI ACGGC 3 cut(s) 682, 694, 1063
BciT130I CCWGG 4 cut(s) 177, 198, 222, 834
BcnI CCSGG 1 cut(s) 751
BfaI CTAG 1 cut(s) 738
BfmI CTRYAG 2 cut(s) 331, 424
BfoI RGCGCY 2 cut(s) 642, 1053
BfuAI ACCTGC 1 cut(s) 456
BglI GCCNNNNNGGC 1 cut(s) 248
BmcAI AGTACT 1 cut(s) 1037
Bme1390I CCNGG 5 cut(s) 177, 198, 222, 751, 834
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 4 cut(s) 226, 640, 1013, 1051
BmrFI CCNGG 5 cut(s) 177, 198, 222, 751, 834
BpiI GAAGAC 1 cut(s) 950
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 2 cut(s) 267, 671
BpuEI CTTGAG 1 cut(s) 829
BpuMI CCSGG 1 cut(s) 751
BsaAI YACGTR 1 cut(s) 386
BsaHI GRCGYC 2 cut(s) 639, 1050
BsaJI CCNNGG 4 cut(s) 175, 228, 887, 1015
BsaWI WCCGGW 5 cut(s) 92, 478, 503, 877, 902
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 416
Bse118I RCCGGY 3 cut(s) 271, 503, 1052
Bse1I ACTGG 4 cut(s) 47, 383, 410, 1043
Bse3DI GCAATG 1 cut(s) 776
BseAI TCCGGA 1 cut(s) 92
BseBI CCWGG 4 cut(s) 177, 198, 222, 834
BseDI CCNNGG 4 cut(s) 175, 228, 887, 1015
BseGI GGATG 5 cut(s) 136, 255, 536, 899, 1132
BseLI CCNNNNNNNGG 2 cut(s) 182, 416
BseMI GCAATG 1 cut(s) 776
BseMII CTCAG 4 cut(s) 143, 258, 389, 662
BseNI ACTGG 4 cut(s) 47, 383, 410, 1043
BsePI GCGCGC 1 cut(s) 393
BseRI GAGGAG 1 cut(s) 468
BseX3I CGGCCG 1 cut(s) 884
BseYI CCCAGC 1 cut(s) 575
Bsh1236I CGCG 2 cut(s) 289, 395
Bsh1285I CGRYCG 1 cut(s) 887
BshFI GGCC 5 cut(s) 38, 196, 220, 669, 886
BshNI GGYRCC 2 cut(s) 638, 1049
BshTI ACCGGT 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 887
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 2 cut(s) 182, 416
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 1066
BsnI GGCC 5 cut(s) 38, 196, 220, 669, 886
Bsp1286I GDGCHC 1 cut(s) 244
Bsp13I TCCGGA 1 cut(s) 92
Bsp143I GATC 6 cut(s) 31, 213, 235, 952, 1011, 1093
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 5 cut(s) 38, 196, 220, 669, 886
BspCNI CTCAG 4 cut(s) 142, 259, 390, 663
BspEI TCCGGA 1 cut(s) 92
BspFNI CGCG 2 cut(s) 289, 395
BspLI GGNNCC 4 cut(s) 226, 640, 1013, 1051
BspMAI CTGCAG 1 cut(s) 428
BspMI ACCTGC 1 cut(s) 456
BspPI GGATC 4 cut(s) 26, 947, 1006, 1019
BspT107I GGYRCC 2 cut(s) 638, 1049
BsrBI CCGCTC 1 cut(s) 717
BsrDI GCAATG 1 cut(s) 776
BsrFI RCCGGY 3 cut(s) 271, 503, 1052
BsrI ACTGG 4 cut(s) 47, 383, 410, 1043
BssAI RCCGGY 3 cut(s) 271, 503, 1052
BssECI CCNNGG 4 cut(s) 175, 228, 887, 1015
BssHII GCGCGC 1 cut(s) 393
BssMI GATC 6 cut(s) 31, 213, 235, 952, 1011, 1093
BssNI GRCGYC 2 cut(s) 639, 1050
BssT1I CCWWGG 2 cut(s) 228, 1015
Bst2UI CCWGG 4 cut(s) 177, 198, 222, 834
Bst4CI ACNGT 2 cut(s) 559, 1031
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 2 cut(s) 639, 1050
BstAPI GCANNNNNTGC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 386
BstC8I GCNNGC 6 cut(s) 244, 273, 287, 395, 514, 643
BstDEI CTNAG 5 cut(s) 129, 267, 309, 398, 671
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 5 cut(s) 136, 255, 536, 899, 1132
BstFNI CGCG 2 cut(s) 289, 395
BstH2I RGCGCY 2 cut(s) 642, 1053
BstHHI GCGC 5 cut(s) 291, 395, 397, 641, 1052
BstKTI GATC 6 cut(s) 34, 216, 238, 955, 1014, 1096
BstMBI GATC 6 cut(s) 31, 213, 235, 952, 1011, 1093
BstMCI CGRYCG 1 cut(s) 887
BstNI CCWGG 4 cut(s) 177, 198, 222, 834
BstSCI CCNGG 5 cut(s) 175, 196, 220, 749, 832
BstSFI CTRYAG 2 cut(s) 331, 424
BstUI CGCG 2 cut(s) 289, 395
BstV2I GAAGAC 1 cut(s) 950
BstX2I RGATCY 2 cut(s) 952, 1011
BstYI RGATCY 2 cut(s) 952, 1011
BstZI CGGCCG 1 cut(s) 884
BsuRI GGCC 5 cut(s) 38, 196, 220, 669, 886
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 5 cut(s) 136, 255, 536, 899, 1132
BtsI GCAGTG 4 cut(s) 196, 599, 916, 1119
BtsIMutI CAGTG 4 cut(s) 196, 599, 916, 1119
BveI ACCTGC 1 cut(s) 456
Cac8I GCNNGC 6 cut(s) 244, 273, 287, 395, 514, 643
CfoI GCGC 5 cut(s) 291, 395, 397, 641, 1052
Cfr10I RCCGGY 3 cut(s) 271, 503, 1052
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 381
Csp6I GTAC 2 cut(s) 1036, 1071
CspAI ACCGGT 1 cut(s) 503
CviAII CATG 3 cut(s) 229, 247, 658
CviQI GTAC 2 cut(s) 1036, 1071
DdeI CTNAG 5 cut(s) 129, 267, 309, 398, 671
DinI GGCGCC 2 cut(s) 640, 1051
DpnI GATC 6 cut(s) 33, 215, 237, 954, 1013, 1095
DpnII GATC 6 cut(s) 31, 213, 235, 952, 1011, 1093
DraIII CACNNNGTG 1 cut(s) 389
EaeI YGGCCR 2 cut(s) 36, 884
EagI CGGCCG 1 cut(s) 884
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 884
Eco130I CCWWGG 2 cut(s) 228, 1015
Eco24I GRGCYC 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 884
Eco72I CACGTG 1 cut(s) 386
EcoRII CCWGG 4 cut(s) 175, 196, 220, 832
EcoT14I CCWWGG 2 cut(s) 228, 1015
EcoT38I GRGCYC 1 cut(s) 244
EgeI GGCGCC 2 cut(s) 640, 1051
EheI GGCGCC 2 cut(s) 640, 1051
ErhI CCWWGG 2 cut(s) 228, 1015
FaeI CATG 3 cut(s) 232, 250, 661
FaiI YATR 6 cut(s) 230, 248, 566, 659, 873, 1141
FaqI GGGAC 1 cut(s) 707
FatI CATG 3 cut(s) 228, 246, 657
FauI CCCGC 4 cut(s) 162, 199, 251, 294
FokI GGATG 5 cut(s) 123, 242, 523, 886, 1119
FriOI GRGCYC 1 cut(s) 244
FspBI CTAG 1 cut(s) 738
GlaI GCGC 5 cut(s) 290, 394, 396, 640, 1051
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 219
HaeII RGCGCY 2 cut(s) 642, 1053
HaeIII GGCC 5 cut(s) 38, 196, 220, 669, 886
HgaI GACGC 1 cut(s) 381
HhaI GCGC 5 cut(s) 291, 395, 397, 641, 1052
Hin1I GRCGYC 2 cut(s) 639, 1050
Hin1II CATG 3 cut(s) 232, 250, 661
Hin6I GCGC 5 cut(s) 289, 393, 395, 639, 1050
HinP1I GCGC 5 cut(s) 289, 393, 395, 639, 1050
HinfI GANTC 4 cut(s) 296, 649, 824, 967
HphI GGTGA 2 cut(s) 68, 952
Hpy166II GTNNAC 1 cut(s) 1089
Hpy188I TCNGA 4 cut(s) 416, 493, 708, 966
Hpy188III TCNNGA 3 cut(s) 29, 93, 808
Hpy8I GTNNAC 1 cut(s) 1089
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 177
HpyCH4III ACNGT 2 cut(s) 559, 1031
HpyCH4IV ACGT 2 cut(s) 385, 405
HpyCH4V TGCA 2 cut(s) 360, 426
HpyF3I CTNAG 5 cut(s) 129, 267, 309, 398, 671
HpySE526I ACGT 2 cut(s) 385, 405
Hsp92I GRCGYC 2 cut(s) 639, 1050
Hsp92II CATG 3 cut(s) 232, 250, 661
HspAI GCGC 5 cut(s) 289, 393, 395, 639, 1050
KasI GGCGCC 2 cut(s) 638, 1049
Kpn2I TCCGGA 1 cut(s) 92
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Kzo9I GATC 6 cut(s) 31, 213, 235, 952, 1011, 1093
LmnI GCTCC 3 cut(s) 441, 714, 835
MaeI CTAG 1 cut(s) 738
MaeII ACGT 2 cut(s) 385, 405
MalI GATC 6 cut(s) 33, 215, 237, 954, 1013, 1095
MbiI CCGCTC 1 cut(s) 717
MboI GATC 6 cut(s) 31, 213, 235, 952, 1011, 1093
MboII GAAGA 4 cut(s) 134, 915, 955, 962
MflI RGATCY 2 cut(s) 952, 1011
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 2 cut(s) 531, 732
Mly113I GGCGCC 2 cut(s) 639, 1050
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 394
MroI TCCGGA 1 cut(s) 92
MroNI GCCGGC 1 cut(s) 271
MseI TTAA 2 cut(s) 581, 1044
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 2 cut(s) 551, 575
MspR9I CCNGG 5 cut(s) 177, 198, 222, 751, 834
Mva1269I GAATGC 1 cut(s) 1066
MvaI CCWGG 4 cut(s) 177, 198, 222, 834
MvnI CGCG 2 cut(s) 289, 395
NaeI GCCGGC 1 cut(s) 273
NarI GGCGCC 2 cut(s) 639, 1050
NciI CCSGG 1 cut(s) 751
NcoI CCATGG 1 cut(s) 228
NdeII GATC 6 cut(s) 31, 213, 235, 952, 1011, 1093
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 3 cut(s) 232, 250, 661
NlaIV GGNNCC 4 cut(s) 226, 640, 1013, 1051
NmeAIII GCCGAG 2 cut(s) 633, 912
PauI GCGCGC 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PctI GAATGC 1 cut(s) 1066
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 649, 824, 967
PinAI ACCGGT 1 cut(s) 503
PleI GAGTC 1 cut(s) 290
PluTI GGCGCC 2 cut(s) 642, 1053
PmaCI CACGTG 1 cut(s) 386
PmlI CACGTG 1 cut(s) 386
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 1 cut(s) 386
PsiI TTATAA 1 cut(s) 873
Psp1406I AACGTT 1 cut(s) 405
Psp6I CCWGG 4 cut(s) 175, 196, 220, 832
PspCI CACGTG 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 4 cut(s) 175, 196, 220, 832
PspN4I GGNNCC 4 cut(s) 226, 640, 1013, 1051
PspPI GGNCC 1 cut(s) 194
PstI CTGCAG 1 cut(s) 428
PsuI RGATCY 2 cut(s) 952, 1011
PteI GCGCGC 1 cut(s) 393
PvuII CAGCTG 2 cut(s) 551, 575
RsaI GTAC 2 cut(s) 1037, 1072
RsaNI GTAC 2 cut(s) 1036, 1071
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 2 cut(s) 581, 1044
Sau3AI GATC 6 cut(s) 31, 213, 235, 952, 1011, 1093
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 1037
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 5 cut(s) 177, 198, 222, 751, 834
SduI GDGCHC 1 cut(s) 244
SfcI CTRYAG 2 cut(s) 331, 424
SfoI GGCGCC 2 cut(s) 640, 1051
SgrAI CRCCGGYG 1 cut(s) 1052
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 808
SmoI CTYRAG 1 cut(s) 808
Sse9I AATT 2 cut(s) 531, 732
SspDI GGCGCC 2 cut(s) 638, 1049
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 5 cut(s) 175, 196, 220, 749, 832
StyI CCWWGG 2 cut(s) 228, 1015
TaaI ACNGT 2 cut(s) 559, 1031
TaiI ACGT 2 cut(s) 388, 408
TaqI TCGA 5 cut(s) 212, 238, 561, 762, 995
TasI AATT 2 cut(s) 531, 732
TatI WGTACW 1 cut(s) 1035
TauI GCSGC 2 cut(s) 423, 886
TfiI GAWTC 3 cut(s) 649, 824, 967
Tru1I TTAA 2 cut(s) 581, 1044
Tru9I TTAA 2 cut(s) 581, 1044
TscAI CASTG 4 cut(s) 196, 606, 916, 1126
TspDTI ATGAA 4 cut(s) 125, 598, 674, 1001
TspGWI ACGGA 1 cut(s) 962
TspRI CASTG 4 cut(s) 196, 606, 916, 1126
XspI CTAG 1 cut(s) 738
ZrmI AGTACT 1 cut(s) 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.