Prupe.6G253300_v2.0.a1

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013835
Physical Location & Seq
Forward (+)
24700247 .. 24702430
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G253300.1

Sequence Viewer

Length: 1137 bp
ATGGTTTTTTCCTCCATTCCAGCTTATCTTGATCCATCCAACTGGCAACAGCAACCAAATCATCATCACTTAACAGGAACCACCAGCAACAACAGCAACATAAACAACAACAACAATTCTCACCTCCTTCCACCTCCGCCACCGCCTTCAAACCCTCATGGCAGCGGCAGTGGCGCAGGTGGTGTGGGCTCGATTAGGCCAGGCTCCATGGCAGATCGAGCCCGCATGGCCAACATCCCGCTCCCAGAACCGGCACTAAAATGCCCCAGGTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGTCTCTCCCAGCCCCGCCATTTCTGCAAGACCTGCCGAAGGTACTGGACACGGGGCGGCGCGCTGAGAAACGTTCCCGTGGGAGGCGGCTGCAGGAGGAACAAAAGAAGCAAAGGAAGCAGCAGCAGCACCTCCAAGTCCCCGGTCAGCAGCTCGGACCGGCCAACCGGTTCGGCCGGTTCACCAGGTCCAGCAAATATTGGCTTAAACAACACCGCAAGCACAGCAGATAATAATATTATGATGAGCCCACAAATCCCACCGCTGCGTTTCATGTCGCCTTTTGCCACCGACATGGCCTTAAATTATGGCATGAACGTTAACAATTATGGCGGCGGCGGGGGAGTAGGAGACATGAACAGTTTTCATCAGATGGGGAGCGGCCTAGGGAGTATCGGCGGGTCGCTCTTTAATTTCCAGCAGCAAACGCCGTCGTTTCCCTTCTTGACAGCTGGCGGCGGGCTGGACCCTTCGCCGGCGGCTGCGGGGATGATGTTCGAGAGCAGTGGAGTTGAGGTGACGGGTTACAATCAGGTGCGGCCGAGAGCACCGTCTGGTCACGGTGTTGCGGGGATGAACTCTCAGATGGCTGCGGTCAAGATGGAGTTAGAAAGTCAACAACATCATCAAAATCAAAATCAAAGTCAAAACCAGGAGTTGAATTTGTCGAGGCAGTTGATGGGGATGAGCTCCGGAAATGATCAGTATTGGGGTAATGGCAGCGGCGCCGGAGGTGGCGGCACTAGTAATACTGCATGGACTGATCTTTCTGGGTTTAGCTCTACAACTTCCACACCTAGCAACAATATTAATAATCCCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

379

Amino Acids

39.72

Weight (kDa)

9.36

Isoelectric Point (pI)

57.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02460
fragaria_vesca FvH4_6g14000
malus_domestica MD04G1126500.v1.1 MD12G1078400.v1.1
prunus_persica Prupe.6G253300_v2.0.a1
pyrus_communis pycom04g11350 pycom12g13510
rosa_chinensis RchiOBHm_Chr3g0466831
rosa_laevigata RLG00000024548
rosa_multiflora Rmu_sc0017982.1_g000002
rosa_roxburghii Rroxscaffold_6G00414100
rosa_rugosa Rorug03G0083900
rosa_samantha Rh3AG131600 Rh3BG152700 Rh3CG152900 Rh3DG153800
rosa_wichuraiana Rw3G012440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 2 cut(s) 167, 353
AccB1I GGYRCC 1 cut(s) 1037
AccBSI CCGCTC 2 cut(s) 241, 693
AccII CGCG 1 cut(s) 374
AccIII TCCGGA 1 cut(s) 1004
AclI AACGTT 2 cut(s) 384, 630
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 4 cut(s) 228, 473, 486, 851
AcsI RAATTY 1 cut(s) 973
AcyI GRCGYC 1 cut(s) 1038
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 4 cut(s) 250, 351, 395, 787
AgeI ACCGGT 1 cut(s) 479
AgsI TTSAA 3 cut(s) 150, 304, 973
AhlI ACTAGT 1 cut(s) 1055
AjnI CCWGG 4 cut(s) 199, 266, 496, 963
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 5 cut(s) 23, 465, 764, 1002, 1092
AluI AGCT 5 cut(s) 23, 465, 764, 1002, 1092
Alw21I GWGCWC 2 cut(s) 862, 1004
Alw26I GTCTC 2 cut(s) 320, 657
AlwI GGATC 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 1004
AoxI GGCC 7 cut(s) 197, 228, 473, 486, 609, 694, 851
ApoI RAATTY 1 cut(s) 973
ArsI GACNNNNNNTTYG 2 cut(s) 940, 972
AseI ATTAAT 1 cut(s) 1122
AsiGI ACCGGT 1 cut(s) 479
AspA2I CCTAGG 1 cut(s) 697
AspLEI GCGC 4 cut(s) 176, 374, 376, 1040
AspS9I GGNCC 3 cut(s) 469, 500, 778
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 3 cut(s) 113, 486, 841
AvaII GGWCC 3 cut(s) 469, 500, 778
AvrII CCTAGG 1 cut(s) 697
BalI TGGCCA 1 cut(s) 230
BanI GGYRCC 1 cut(s) 1037
BanII GRGCYC 4 cut(s) 191, 223, 563, 1004
Bbv12I GWGCWC 2 cut(s) 862, 1004
BccI CCATC 5 cut(s) 43, 679, 892, 907, 985
BceAI ACGGC 1 cut(s) 727
BciT130I CCWGG 4 cut(s) 201, 268, 498, 965
BclI TGATCA 1 cut(s) 1012
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 320, 657
BcuI ACTAGT 1 cut(s) 1055
BfaI CTAG 3 cut(s) 698, 1056, 1110
BfmI CTRYAG 2 cut(s) 310, 403
BfoI RGCGCY 1 cut(s) 1041
BfuAI ACCTGC 2 cut(s) 167, 353
BglI GCCNNNNNGGC 1 cut(s) 227
BlnI CCTAGG 1 cut(s) 697
Bme1390I CCNGG 5 cut(s) 201, 268, 455, 498, 965
Bme18I GGWCC 3 cut(s) 469, 500, 778
BmgT120I GGNCC 3 cut(s) 469, 500, 778
BmiI GGNNCC 4 cut(s) 79, 205, 780, 1039
BmrFI CCNGG 5 cut(s) 201, 268, 455, 498, 965
BpuMI CCSGG 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 1038
BsaJI CCNNGG 5 cut(s) 207, 266, 390, 453, 697
BsaWI WCCGGW 2 cut(s) 479, 1004
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 813, 843
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 351, 395, 787
Bse118I RCCGGY 5 cut(s) 250, 471, 479, 488, 787
Bse1I ACTGG 2 cut(s) 47, 362
BseAI TCCGGA 1 cut(s) 1004
BseBI CCWGG 4 cut(s) 201, 268, 498, 965
BseDI CCNNGG 5 cut(s) 207, 266, 390, 453, 697
BseGI GGATG 5 cut(s) 35, 234, 807, 891, 1002
BseLI CCNNNNNNNGG 4 cut(s) 250, 351, 395, 787
BseMII CTCAG 2 cut(s) 368, 908
BseNI ACTGG 2 cut(s) 47, 362
BsePI GCGCGC 1 cut(s) 372
BseX3I CGGCCG 2 cut(s) 486, 851
BseYI CCCAGC 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 374
Bsh1285I CGRYCG 2 cut(s) 489, 854
BshFI GGCC 7 cut(s) 199, 230, 475, 488, 611, 696, 853
BshNI GGYRCC 1 cut(s) 1037
BshTI ACCGGT 1 cut(s) 479
BsiEI CGRYCG 2 cut(s) 489, 854
BsiHKAI GWGCWC 2 cut(s) 862, 1004
BsiSI CCGG 8 cut(s) 251, 455, 472, 480, 489, 788, 1005, 1041
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 4 cut(s) 250, 351, 395, 787
BsmAI GTCTC 2 cut(s) 320, 657
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 7 cut(s) 199, 230, 475, 488, 611, 696, 853
Bsp1286I GDGCHC 5 cut(s) 191, 223, 563, 862, 1004
Bsp13I TCCGGA 1 cut(s) 1004
Bsp143I GATC 4 cut(s) 31, 214, 1012, 1075
Bsp19I CCATGG 1 cut(s) 207
BspANI GGCC 7 cut(s) 199, 230, 475, 488, 611, 696, 853
BspCNI CTCAG 2 cut(s) 369, 907
BspEI TCCGGA 1 cut(s) 1004
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 4 cut(s) 79, 205, 780, 1039
BspMAI CTGCAG 1 cut(s) 407
BspMI ACCTGC 2 cut(s) 167, 353
BspPI GGATC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 1037
BsrBI CCGCTC 2 cut(s) 241, 693
BsrFI RCCGGY 5 cut(s) 250, 471, 479, 488, 787
BsrI ACTGG 2 cut(s) 47, 362
BssAI RCCGGY 5 cut(s) 250, 471, 479, 488, 787
BssECI CCNNGG 5 cut(s) 207, 266, 390, 453, 697
BssHII GCGCGC 1 cut(s) 372
BssMI GATC 4 cut(s) 31, 214, 1012, 1075
BssNI GRCGYC 1 cut(s) 1038
BssT1I CCWWGG 2 cut(s) 207, 697
Bst2UI CCWGG 4 cut(s) 201, 268, 498, 965
Bst4CI ACNGT 4 cut(s) 314, 674, 864, 875
BstACI GRCGYC 1 cut(s) 1038
BstAPI GCANNNNNTGC 1 cut(s) 345
BstC8I GCNNGC 6 cut(s) 223, 374, 532, 766, 773, 789
BstDEI CTNAG 2 cut(s) 377, 894
BstDSI CCRYGG 2 cut(s) 207, 390
BstENI CCTNNNNNAGG 1 cut(s) 349
BstF5I GGATG 5 cut(s) 35, 234, 807, 891, 1002
BstFNI CGCG 1 cut(s) 374
BstH2I RGCGCY 1 cut(s) 1041
BstHHI GCGC 4 cut(s) 176, 374, 376, 1040
BstKTI GATC 4 cut(s) 34, 217, 1015, 1078
BstMAI GTCTC 2 cut(s) 320, 657
BstMBI GATC 4 cut(s) 31, 214, 1012, 1075
BstMCI CGRYCG 2 cut(s) 489, 854
BstNI CCWGG 4 cut(s) 201, 268, 498, 965
BstSCI CCNGG 5 cut(s) 199, 266, 453, 496, 963
BstSFI CTRYAG 2 cut(s) 310, 403
BstUI CGCG 1 cut(s) 374
BstXI CCANNNNNNTGG 2 cut(s) 42, 607
BstZI CGGCCG 2 cut(s) 486, 851
BsuRI GGCC 7 cut(s) 199, 230, 475, 488, 611, 696, 853
BtgI CCRYGG 2 cut(s) 207, 390
BtsCI GGATG 5 cut(s) 35, 234, 807, 891, 1002
BtsI GCAGTG 2 cut(s) 175, 823
BtsIMutI CAGTG 2 cut(s) 175, 823
BveI ACCTGC 2 cut(s) 167, 353
Cac8I GCNNGC 6 cut(s) 223, 374, 532, 766, 773, 789
CfoI GCGC 4 cut(s) 176, 374, 376, 1040
Cfr10I RCCGGY 5 cut(s) 250, 471, 479, 488, 787
Cfr13I GGNCC 3 cut(s) 469, 500, 778
CpoI CGGWCCG 1 cut(s) 469
CsiI ACCWGGT 1 cut(s) 496
Csp6I GTAC 1 cut(s) 355
CspAI ACCGGT 1 cut(s) 479
CspI CGGWCCG 1 cut(s) 469
CviAII CATG 8 cut(s) 158, 208, 226, 586, 607, 625, 667, 1068
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 2 cut(s) 377, 894
DinI GGCGCC 1 cut(s) 1039
DpnI GATC 4 cut(s) 33, 216, 1014, 1077
DpnII GATC 4 cut(s) 31, 214, 1012, 1075
EaeI YGGCCR 4 cut(s) 228, 473, 486, 851
EagI CGGCCG 2 cut(s) 486, 851
EciI GGCGGA 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 1002
EclXI CGGCCG 2 cut(s) 486, 851
Eco130I CCWWGG 2 cut(s) 207, 697
Eco24I GRGCYC 4 cut(s) 191, 223, 563, 1004
Eco47I GGWCC 3 cut(s) 469, 500, 778
Eco52I CGGCCG 2 cut(s) 486, 851
Eco53kI GAGCTC 1 cut(s) 1002
EcoICRI GAGCTC 1 cut(s) 1002
EcoNI CCTNNNNNAGG 1 cut(s) 349
EcoRII CCWGG 4 cut(s) 199, 266, 496, 963
EcoT14I CCWWGG 2 cut(s) 207, 697
EcoT38I GRGCYC 4 cut(s) 191, 223, 563, 1004
EgeI GGCGCC 1 cut(s) 1039
EheI GGCGCC 1 cut(s) 1039
ErhI CCWWGG 2 cut(s) 207, 697
FaeI CATG 8 cut(s) 161, 211, 229, 589, 610, 628, 670, 1071
FaqI GGGAC 1 cut(s) 436
FatI CATG 8 cut(s) 157, 207, 225, 585, 606, 624, 666, 1067
FauI CCCGC 8 cut(s) 230, 246, 335, 644, 704, 764, 790, 874
FbaI TGATCA 1 cut(s) 1012
FokI GGATG 5 cut(s) 22, 221, 814, 898, 1009
FriOI GRGCYC 4 cut(s) 191, 223, 563, 1004
FspBI CTAG 3 cut(s) 698, 1056, 1110
GlaI GCGC 4 cut(s) 175, 373, 375, 1039
GsaI CCCAGC 1 cut(s) 325
HaeII RGCGCY 1 cut(s) 1041
HaeIII GGCC 7 cut(s) 199, 230, 475, 488, 611, 696, 853
HapII CCGG 8 cut(s) 251, 455, 472, 480, 489, 788, 1005, 1041
HhaI GCGC 4 cut(s) 176, 374, 376, 1040
Hin1I GRCGYC 1 cut(s) 1038
Hin1II CATG 8 cut(s) 161, 211, 229, 589, 610, 628, 670, 1071
Hin6I GCGC 4 cut(s) 174, 372, 374, 1038
HinP1I GCGC 4 cut(s) 174, 372, 374, 1038
HincII GTYRAC 2 cut(s) 634, 929
HindII GTYRAC 2 cut(s) 634, 929
HinfI GANTC 1 cut(s) 275
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 8 cut(s) 251, 455, 472, 480, 489, 788, 1005, 1041
HphI GGTGA 3 cut(s) 113, 486, 841
Hpy166II GTNNAC 4 cut(s) 279, 494, 634, 929
Hpy188I TCNGA 3 cut(s) 469, 684, 897
Hpy188III TCNNGA 5 cut(s) 29, 757, 811, 910, 1005
Hpy8I GTNNAC 4 cut(s) 279, 494, 634, 929
Hpy99I CGWCG 1 cut(s) 748
HpyAV CCTTC 5 cut(s) 137, 156, 345, 763, 792
HpyCH4III ACNGT 4 cut(s) 314, 674, 864, 875
HpyCH4IV ACGT 2 cut(s) 384, 630
HpyCH4V TGCA 3 cut(s) 339, 405, 1067
HpyF3I CTNAG 2 cut(s) 377, 894
HpySE526I ACGT 2 cut(s) 384, 630
Hsp92I GRCGYC 1 cut(s) 1038
Hsp92II CATG 8 cut(s) 161, 211, 229, 589, 610, 628, 670, 1071
HspAI GCGC 4 cut(s) 174, 372, 374, 1038
KasI GGCGCC 1 cut(s) 1037
Kpn2I TCCGGA 1 cut(s) 1004
KroI GCCGGC 1 cut(s) 787
KroNI GCCGGC 1 cut(s) 789
Ksp22I TGATCA 1 cut(s) 1012
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 4 cut(s) 31, 214, 1012, 1075
LmnI GCTCC 4 cut(s) 209, 246, 690, 1007
MabI ACCWGGT 1 cut(s) 496
MaeI CTAG 3 cut(s) 698, 1056, 1110
MaeII ACGT 2 cut(s) 384, 630
MaeIII GTNAC 3 cut(s) 829, 836, 869
MalI GATC 4 cut(s) 33, 216, 1014, 1077
MbiI CCGCTC 2 cut(s) 241, 693
MboI GATC 4 cut(s) 31, 214, 1012, 1075
MhlI GDGCHC 5 cut(s) 191, 223, 563, 862, 1004
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 5 cut(s) 115, 616, 637, 724, 973
MluNI TGGCCA 1 cut(s) 230
Mly113I GGCGCC 1 cut(s) 1038
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 63
Mox20I TGGCCA 1 cut(s) 230
MreI CGCCGGCG 1 cut(s) 787
MroI TCCGGA 1 cut(s) 1004
MroNI GCCGGC 1 cut(s) 787
MscI TGGCCA 1 cut(s) 230
MseI TTAA 6 cut(s) 71, 518, 614, 633, 723, 1122
MslI CAYNNNNRTG 2 cut(s) 259, 605
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 4 cut(s) 165, 577, 764, 1035
MspI CCGG 8 cut(s) 251, 455, 472, 480, 489, 788, 1005, 1041
MspR9I CCNGG 5 cut(s) 201, 268, 455, 498, 965
MvaI CCWGG 4 cut(s) 201, 268, 498, 965
MvnI CGCG 1 cut(s) 374
NaeI GCCGGC 1 cut(s) 789
NarI GGCGCC 1 cut(s) 1038
NciI CCSGG 1 cut(s) 455
NcoI CCATGG 1 cut(s) 207
NdeII GATC 4 cut(s) 31, 214, 1012, 1075
NgoMIV GCCGGC 1 cut(s) 787
NlaIII CATG 8 cut(s) 161, 211, 229, 589, 610, 628, 670, 1071
NlaIV GGNNCC 4 cut(s) 79, 205, 780, 1039
NmeAIII GCCGAG 1 cut(s) 879
NmuCI GTSAC 2 cut(s) 829, 869
PaqCI CACCTGC 1 cut(s) 167
PauI GCGCGC 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 789
PinAI ACCGGT 1 cut(s) 479
PleI GAGTC 1 cut(s) 283
PluTI GGCGCC 1 cut(s) 1041
PpsI GAGTC 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 1122
Psp124BI GAGCTC 1 cut(s) 1004
Psp1406I AACGTT 2 cut(s) 384, 630
Psp6I CCWGG 4 cut(s) 199, 266, 496, 963
PspFI CCCAGC 1 cut(s) 321
PspGI CCWGG 4 cut(s) 199, 266, 496, 963
PspN4I GGNNCC 4 cut(s) 79, 205, 780, 1039
PspPI GGNCC 3 cut(s) 469, 500, 778
PstI CTGCAG 1 cut(s) 407
PteI GCGCGC 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 2 cut(s) 259, 605
Rsr2I CGGWCCG 1 cut(s) 469
RsrII CGGWCCG 1 cut(s) 469
SacI GAGCTC 1 cut(s) 1004
SaqAI TTAA 6 cut(s) 71, 518, 614, 633, 723, 1122
Sau3AI GATC 4 cut(s) 31, 214, 1012, 1075
Sau96I GGNCC 3 cut(s) 469, 500, 778
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 5 cut(s) 201, 268, 455, 498, 965
SduI GDGCHC 5 cut(s) 191, 223, 563, 862, 1004
SexAI ACCWGGT 1 cut(s) 496
SfcI CTRYAG 2 cut(s) 310, 403
SfoI GGCGCC 1 cut(s) 1039
SgrAI CRCCGGYG 1 cut(s) 787
SinI GGWCC 3 cut(s) 469, 500, 778
SmiMI CAYNNNNRTG 2 cut(s) 259, 605
SpeI ACTAGT 1 cut(s) 1055
Sse9I AATT 5 cut(s) 115, 616, 637, 724, 973
SspDI GGCGCC 1 cut(s) 1037
SspI AATATT 3 cut(s) 511, 550, 1120
SspMI CTAG 3 cut(s) 698, 1056, 1110
SstI GAGCTC 1 cut(s) 1004
StyD4I CCNGG 5 cut(s) 199, 266, 453, 496, 963
StyI CCWWGG 2 cut(s) 207, 697
TaaI ACNGT 4 cut(s) 314, 674, 864, 875
TaiI ACGT 2 cut(s) 387, 633
TaqI TCGA 4 cut(s) 191, 217, 810, 980
TasI AATT 5 cut(s) 115, 616, 637, 724, 973
Tru1I TTAA 6 cut(s) 71, 518, 614, 633, 723, 1122
Tru9I TTAA 6 cut(s) 71, 518, 614, 633, 723, 1122
TscAI CASTG 2 cut(s) 175, 823
TseFI GTSAC 2 cut(s) 829, 869
Tsp45I GTSAC 2 cut(s) 829, 869
TspDTI ATGAA 5 cut(s) 574, 641, 668, 683, 902
TspRI CASTG 2 cut(s) 175, 823
VpaK11BI GGWCC 3 cut(s) 469, 500, 778
VspI ATTAAT 1 cut(s) 1122
XagI CCTNNNNNAGG 1 cut(s) 349
XapI RAATTY 1 cut(s) 973
XmaJI CCTAGG 1 cut(s) 697
XspI CTAG 3 cut(s) 698, 1056, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.