pycom12g13510

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013835
Physical Location & Seq
Forward (+)
15991066 .. 15992287
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13510.2

Sequence Viewer

Length: 1035 bp
ATGGTTTTCTCTTCCATTCCAGCTTATCTTGATCCGGCCAATTGGCAGCAGCAACCAAATCATCACCACCACTTAACAGGAAGCAACACCAATAACATTAGCAACAACAACATCAACAACAACAACTCTCACTTCCTTCCGCCTCCTCCTCCGCCGCTGCCTTCAAACCCTCATGACGGCTGTGGGGTAGGTGGTGCGGGCTCGATCAGGCCAGGCTCTATGGCAGATCGAGCTCGCATGGCCAACATCCCCCTCCCAGAGCAAGCACTAAAATGTCCGCGGTGCGAATCCACAAACACTAAGTTCTGCTACTTCAACAACTACAGCCTCACACAGCCCCGCCACTTCTGCAAGACTTGTAGAAGGTACTGGACGCGAGGCGGGGCCCTGCGTAATGTTCCAGTTGGCGGCGGCTGCAGGAGAAACAAAAGGAGCAAAGGAACCAGTAGCAGCGCCTCCAAGTCCCCAGCCAGCAGCTCGGACCGGCCAACCTGTTCGGCCGGTTCGTCGGGCCACTCAAATTTAGGGTTAAACAACAGTAGCACGGCCGGCTCGGCGGATAATAATAACATGAGGATGAGCCCGCAAATCCCACCTCTGCGTTTCATGTCGCCTTTCGCCACCGACATGGCCTTAAATTTCGGCATGATGAACAATAATAATAGCAGTAATTATGGAGTTGGAGACTTGAATGGTTTTCATCAGATGGGGAGTGGTCTAGGAGCTAGCGGTGGATCGCTCTTTAATTTCCAGCAGCAGACGCCGTCATTTCCGTTCATGGCCGGGTTGGATCCTACGCCGGCGGGGCTTATGTTCGAGACCAGCGGAGTTGAGGTACCGGGGTATAATCAGGTGCGGCCGAGAGCACCGTCTGCTGGGATGAGTATATCTCAAATGGCTTCGGTGAAGATGGAATTAGAAAGTCAGCAACAACAACAACAACAGCAACAGAATCAGGAGTTGAACTTGTCGAGGCAGTTGTTGGGGATGAATAATAATTCAGGAAATGATCCATCGCTTTTAGTTCTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

345

Amino Acids

37.03

Weight (kDa)

9.24

Isoelectric Point (pI)

57.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02460
fragaria_vesca FvH4_6g14000
malus_domestica MD04G1126500.v1.1 MD12G1078400.v1.1
prunus_persica Prupe.6G253300_v2.0.a1
pyrus_communis pycom04g11350 pycom12g13510
rosa_chinensis RchiOBHm_Chr3g0466831
rosa_laevigata RLG00000024548
rosa_multiflora Rmu_sc0017982.1_g000002
rosa_roxburghii Rroxscaffold_6G00414100
rosa_rugosa Rorug03G0083900
rosa_samantha Rh3AG131600 Rh3BG152700 Rh3CG152900 Rh3DG153800
rosa_wichuraiana Rw3G012440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 835
AccB1I GGYRCC 1 cut(s) 835
AccII CGCG 2 cut(s) 280, 376
AclWI GGATC 5 cut(s) 26, 742, 785, 798, 1004
AcoI YGGCCR 7 cut(s) 36, 240, 485, 498, 546, 780, 857
AcsI RAATTY 2 cut(s) 520, 637
AcyI GRCGYC 1 cut(s) 761
AfaI GTAC 2 cut(s) 368, 837
AfiI CCNNNNNNNGG 3 cut(s) 176, 407, 875
AgsI TTSAA 4 cut(s) 165, 316, 691, 964
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 4 cut(s) 23, 233, 477, 725
AluI AGCT 4 cut(s) 23, 233, 477, 725
Alw21I GWGCWC 2 cut(s) 235, 868
Alw26I GTCTC 2 cut(s) 678, 812
AlwI GGATC 5 cut(s) 26, 742, 785, 798, 1004
ApaI GGGCCC 1 cut(s) 388
ApeKI GCWGC 7 cut(s) 46, 49, 157, 414, 450, 474, 754
ApoI RAATTY 2 cut(s) 520, 637
Asp718I GGTACC 1 cut(s) 835
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 4 cut(s) 384, 385, 481, 511
AsuC2I CCSGG 2 cut(s) 784, 840
AsuHPI GGTGA 2 cut(s) 56, 916
AsuNHI GCTAGC 1 cut(s) 725
AvaII GGWCC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 388
BaeI ACNNNNGTAYC 2 cut(s) 827, 860
BalI TGGCCA 1 cut(s) 242
BamHI GGATCC 1 cut(s) 790
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 4 cut(s) 203, 235, 388, 584
Bbv12I GWGCWC 2 cut(s) 235, 868
BbvI GCAGC 7 cut(s) 58, 61, 144, 401, 462, 486, 766
BccI CCATC 3 cut(s) 700, 904, 1021
BceAI ACGGC 3 cut(s) 193, 561, 748
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 2 cut(s) 784, 840
BcoDI GTCTC 2 cut(s) 678, 812
BfaI CTAG 2 cut(s) 719, 726
BfmI CTRYAG 2 cut(s) 322, 415
BfoI RGCGCY 1 cut(s) 456
BglI GCCNNNNNGGC 2 cut(s) 554, 805
Bme1390I CCNGG 3 cut(s) 213, 784, 840
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 4 cut(s) 384, 385, 481, 511
BmiI GGNNCC 5 cut(s) 385, 386, 442, 792, 837
BmrFI CCNGG 3 cut(s) 213, 784, 840
BmtI GCTAGC 1 cut(s) 729
BplI GAGNNNNNCTC 2 cut(s) 874, 906
BpuMI CCSGG 2 cut(s) 784, 840
BsaHI GRCGYC 1 cut(s) 761
BsaI GGTCTC 1 cut(s) 812
BsaJI CCNNGG 2 cut(s) 278, 839
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 407, 875
Bse118I RCCGGY 4 cut(s) 483, 500, 548, 799
Bse1I ACTGG 3 cut(s) 374, 401, 444
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 278, 839
BseGI GGATG 4 cut(s) 246, 582, 885, 993
BseLI CCNNNNNNNGG 3 cut(s) 176, 407, 875
BseNI ACTGG 3 cut(s) 374, 401, 444
BseRI GAGGAG 2 cut(s) 135, 138
BseSI GKGCMC 1 cut(s) 388
BseX3I CGGCCG 3 cut(s) 498, 546, 857
BseXI GCAGC 7 cut(s) 58, 61, 144, 401, 462, 486, 766
BseYI CCCAGC 2 cut(s) 466, 875
Bsh1236I CGCG 2 cut(s) 280, 376
Bsh1285I CGRYCG 3 cut(s) 501, 549, 860
BshNI GGYRCC 1 cut(s) 835
BsiEI CGRYCG 3 cut(s) 501, 549, 860
BsiHKAI GWGCWC 2 cut(s) 235, 868
BsiSI CCGG 7 cut(s) 35, 484, 501, 549, 783, 800, 839
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 176, 407, 875
BsmAI GTCTC 2 cut(s) 678, 812
BsmFI GGGAC 1 cut(s) 448
Bso31I GGTCTC 1 cut(s) 812
Bsp120I GGGCCC 1 cut(s) 384
Bsp1286I GDGCHC 5 cut(s) 203, 235, 388, 584, 868
Bsp143I GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
BspFNI CGCG 2 cut(s) 280, 376
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 5 cut(s) 385, 386, 442, 792, 837
BspMAI CTGCAG 1 cut(s) 419
BspOI GCTAGC 1 cut(s) 729
BspPI GGATC 5 cut(s) 26, 742, 785, 798, 1004
BspT107I GGYRCC 1 cut(s) 835
BspTNI GGTCTC 1 cut(s) 812
BsrFI RCCGGY 4 cut(s) 483, 500, 548, 799
BsrI ACTGG 3 cut(s) 374, 401, 444
BssAI RCCGGY 4 cut(s) 483, 500, 548, 799
BssECI CCNNGG 2 cut(s) 278, 839
BssMI GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
BssNI GRCGYC 1 cut(s) 761
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 539, 870
Bst6I CTCTTC 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 761
BstAPI GCANNNNNTGC 1 cut(s) 872
BstC8I GCNNGC 8 cut(s) 199, 235, 264, 472, 550, 584, 727, 801
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 4 cut(s) 246, 582, 885, 993
BstFNI CGCG 2 cut(s) 280, 376
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 6 cut(s) 34, 207, 229, 737, 793, 1012
BstMAI GTCTC 2 cut(s) 678, 812
BstMBI GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
BstMCI CGRYCG 3 cut(s) 501, 549, 860
BstMWI GCNNNNNNNGC 9 cut(s) 230, 239, 348, 414, 549, 554, 760, 805, 872
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 3 cut(s) 211, 782, 838
BstSFI CTRYAG 2 cut(s) 322, 415
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 2 cut(s) 280, 376
BstV1I GCAGC 7 cut(s) 58, 61, 144, 401, 462, 486, 766
BstX2I RGATCY 1 cut(s) 790
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 1 cut(s) 790
BstZI CGGCCG 3 cut(s) 498, 546, 857
BtgI CCRYGG 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 999
BtsCI GGATG 4 cut(s) 246, 582, 885, 993
Cac8I GCNNGC 8 cut(s) 199, 235, 264, 472, 550, 584, 727, 801
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 455
Cfr10I RCCGGY 4 cut(s) 483, 500, 548, 799
Cfr13I GGNCC 4 cut(s) 384, 385, 481, 511
Cfr42I CCGCGG 1 cut(s) 281
CpoI CGGWCCG 1 cut(s) 481
CseI GACGC 2 cut(s) 382, 769
Csp6I GTAC 2 cut(s) 367, 836
CspI CGGWCCG 1 cut(s) 481
CviAII CATG 7 cut(s) 173, 238, 571, 607, 628, 646, 778
CviQI GTAC 2 cut(s) 367, 836
DdeI CTNAG 1 cut(s) 300
DpnI GATC 6 cut(s) 33, 206, 228, 736, 792, 1011
DpnII GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
EaeI YGGCCR 7 cut(s) 36, 240, 485, 498, 546, 780, 857
EagI CGGCCG 3 cut(s) 498, 546, 857
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
EciI GGCGGA 3 cut(s) 129, 141, 572
Ecl136II GAGCTC 1 cut(s) 233
EclXI CGGCCG 3 cut(s) 498, 546, 857
Eco24I GRGCYC 4 cut(s) 203, 235, 388, 584
Eco31I GGTCTC 1 cut(s) 812
Eco47I GGWCC 1 cut(s) 481
Eco52I CGGCCG 3 cut(s) 498, 546, 857
Eco53kI GAGCTC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 233
EcoO109I RGGNCCY 2 cut(s) 384, 385
EcoRII CCWGG 1 cut(s) 211
EcoT38I GRGCYC 4 cut(s) 203, 235, 388, 584
FaeI CATG 7 cut(s) 176, 241, 574, 610, 631, 649, 781
FaqI GGGAC 1 cut(s) 448
FatI CATG 7 cut(s) 172, 237, 570, 606, 627, 645, 777
FauI CCCGC 5 cut(s) 190, 347, 374, 591, 796
FokI GGATG 4 cut(s) 233, 589, 892, 1000
FriOI GRGCYC 4 cut(s) 203, 235, 388, 584
FspBI CTAG 2 cut(s) 719, 726
GlaI GCGC 1 cut(s) 454
GsaI CCCAGC 2 cut(s) 470, 879
HaeII RGCGCY 1 cut(s) 456
HapII CCGG 7 cut(s) 35, 484, 501, 549, 783, 800, 839
HgaI GACGC 2 cut(s) 382, 769
HhaI GCGC 1 cut(s) 455
Hin1I GRCGYC 1 cut(s) 761
Hin1II CATG 7 cut(s) 176, 241, 574, 610, 631, 649, 781
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HinfI GANTC 2 cut(s) 287, 952
HpaII CCGG 7 cut(s) 35, 484, 501, 549, 783, 800, 839
HphI GGTGA 2 cut(s) 56, 916
Hpy188I TCNGA 2 cut(s) 481, 705
Hpy188III TCNNGA 6 cut(s) 29, 173, 817, 956, 1002, 1028
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 3 cut(s) 146, 171, 357
HpyCH4III ACNGT 2 cut(s) 539, 870
HpyCH4V TGCA 2 cut(s) 351, 417
HpyF10VI GCNNNNNNNGC 9 cut(s) 230, 239, 348, 414, 549, 554, 760, 805, 872
HpyF3I CTNAG 1 cut(s) 300
Hsp92I GRCGYC 1 cut(s) 761
Hsp92II CATG 7 cut(s) 176, 241, 574, 610, 631, 649, 781
HspAI GCGC 1 cut(s) 453
KpnI GGTACC 1 cut(s) 839
KroI GCCGGC 2 cut(s) 548, 799
KroNI GCCGGC 2 cut(s) 550, 801
KspI CCGCGG 1 cut(s) 281
Kzo9I GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
LmnI GCTCC 2 cut(s) 432, 722
Lsp1109I GCAGC 7 cut(s) 58, 61, 144, 401, 462, 486, 766
MaeI CTAG 2 cut(s) 719, 726
MalI GATC 6 cut(s) 33, 206, 228, 736, 792, 1011
MboI GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
MboII GAAGA 2 cut(s) 3, 919
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 5 cut(s) 203, 235, 388, 584, 868
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 7 cut(s) 40, 520, 637, 670, 745, 914, 997
MluNI TGGCCA 1 cut(s) 242
MmeI TCCRAC 2 cut(s) 661, 768
Mox20I TGGCCA 1 cut(s) 242
MreI CGCCGGCG 1 cut(s) 799
MroNI GCCGGC 2 cut(s) 548, 799
MscI TGGCCA 1 cut(s) 242
MseI TTAA 4 cut(s) 74, 530, 635, 744
MslI CAYNNNNRTG 3 cut(s) 271, 575, 626
Msp20I TGGCCA 1 cut(s) 242
MspA1I CMGCKG 3 cut(s) 157, 280, 825
MspI CCGG 7 cut(s) 35, 484, 501, 549, 783, 800, 839
MspR9I CCNGG 3 cut(s) 213, 784, 840
MunI CAATTG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 2 cut(s) 280, 376
MwoI GCNNNNNNNGC 9 cut(s) 230, 239, 348, 414, 549, 554, 760, 805, 872
NaeI GCCGGC 2 cut(s) 550, 801
NciI CCSGG 2 cut(s) 784, 840
NdeII GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
NgoMIV GCCGGC 2 cut(s) 548, 799
NheI GCTAGC 1 cut(s) 725
NlaIII CATG 7 cut(s) 176, 241, 574, 610, 631, 649, 781
NlaIV GGNNCC 5 cut(s) 385, 386, 442, 792, 837
NmeAIII GCCGAG 2 cut(s) 533, 885
PagI TCATGA 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 503
PdiI GCCGGC 2 cut(s) 550, 801
PfeI GAWTC 2 cut(s) 287, 952
PflFI GACNNNGTC 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 2 cut(s) 466, 875
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 5 cut(s) 385, 386, 442, 792, 837
PspOMI GGGCCC 1 cut(s) 384
PspPI GGNCC 4 cut(s) 384, 385, 481, 511
PstI CTGCAG 1 cut(s) 419
PsuI RGATCY 1 cut(s) 790
PsyI GACNNNGTC 1 cut(s) 763
RsaI GTAC 2 cut(s) 368, 837
RsaNI GTAC 2 cut(s) 367, 836
RseI CAYNNNNRTG 3 cut(s) 271, 575, 626
Rsr2I CGGWCCG 1 cut(s) 481
RsrII CGGWCCG 1 cut(s) 481
SacI GAGCTC 1 cut(s) 235
SacII CCGCGG 1 cut(s) 281
SaqAI TTAA 4 cut(s) 74, 530, 635, 744
Sau3AI GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
Sau96I GGNCC 4 cut(s) 384, 385, 481, 511
ScrFI CCNGG 3 cut(s) 213, 784, 840
SduI GDGCHC 5 cut(s) 203, 235, 388, 584, 868
SfcI CTRYAG 2 cut(s) 322, 415
Sfr303I CCGCGG 1 cut(s) 281
SgrAI CRCCGGYG 1 cut(s) 799
SgrBI CCGCGG 1 cut(s) 281
SinI GGWCC 1 cut(s) 481
SmiMI CAYNNNNRTG 3 cut(s) 271, 575, 626
Sse9I AATT 7 cut(s) 40, 520, 637, 670, 745, 914, 997
SspMI CTAG 2 cut(s) 719, 726
SstI GAGCTC 1 cut(s) 235
StyD4I CCNGG 3 cut(s) 211, 782, 838
TaaI ACNGT 2 cut(s) 539, 870
TaqI TCGA 4 cut(s) 203, 229, 816, 971
TasI AATT 7 cut(s) 40, 520, 637, 670, 745, 914, 997
TauI GCSGC 4 cut(s) 157, 411, 414, 859
TfiI GAWTC 2 cut(s) 287, 952
Tru1I TTAA 4 cut(s) 74, 530, 635, 744
Tru9I TTAA 4 cut(s) 74, 530, 635, 744
TseI GCWGC 7 cut(s) 46, 49, 157, 414, 450, 474, 754
TspDTI ATGAA 5 cut(s) 595, 665, 689, 766, 1004
TspGWI ACGGA 1 cut(s) 762
Tth111I GACNNNGTC 1 cut(s) 763
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 2 cut(s) 520, 637
XspI CTAG 2 cut(s) 719, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.